4HGG - JenaLib

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Title :   CRYSTAL STRUCTURE OF P450 BM3 5F5R HEME DOMAIN VARIANT COMPLEXED WITH STYRENE

Authors :   A. Shehzad, S. Panneerselvam, M. Bocola, J. Mueller-Dieckmann, M. Wil U. Schwaneberg

Date :   08 Oct 12 (Deposition) - 01 May 13 (Release) - 08 May 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Oxidoreductase, P450 Bm3, Hemoprotein, Styrene Epoxidation, Inverted Enantioselectivity, Heme Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Shehzad, S. Panneerselvam, M. Linow, M. Bocola, D. Roccatano, J. Mueller-Dieckmann, M. Wilmanns, U. Schwaneberg
P450 Bm3 Crystal Structures Reveal The Role Of The Charged Surface Residue Lys/Arg184 In Inversion Of Enantioselective Styrene Epoxidation.
Chem. Commun. (Camb. ) V. 49 4694 2013
PubMed-ID: 23589805 | Reference-DOI: 10.1039/C3CC39076D
(for further references see the PDB file header)

Molecule 1 - BIFUNCTIONAL P-450/NADPH-P450 REDUCTASE
	Chains	:	A, B
	EC Number	:	1.14.14.1, 1.6.2.4
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PETM11
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	HEME-BINDING DOMAIN
	Gene	:	CYP102, CYP102A1
	Mutation	:	YES
	Organism Scientific	:	BACILLUS MEGATERIUM
	Organism Taxid	:	1404
	Synonym	:	CYTOCHROME P450(BM-3), CYTOCHROME P450BM-3, CYTOCHROME P450 102, NADPH--CYTOCHROME P450 REDUCTASE

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 11)

No.	Name	Count	Type	Full Name
1	GOL	6	Ligand/Ion	GLYCEROL
2	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	MES	1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4	SYN	2	Ligand/Ion	ETHENYLBENZENE

Biological Unit 1 (4, 7)

No.	Name	Count	Type	Full Name
1	GOL	4	Ligand/Ion	GLYCEROL
2	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	MES	1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4	SYN	1	Ligand/Ion	ETHENYLBENZENE

Biological Unit 2 (3, 4)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	MES	-1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4	SYN	1	Ligand/Ion	ETHENYLBENZENE

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:69 , LEU A:75 , LEU A:86 , ALA A:87 , TRP A:96 , PHE A:261 , ALA A:264 , GLY A:265 , THR A:268 , THR A:269 , PHE A:331 , PRO A:392 , PHE A:393 , GLY A:394 , ARG A:398 , ALA A:399 , CYS A:400 , ILE A:401 , GLY A:402 , ALA A:406 , SYN A:502 , HOH A:602 , HOH A:603 , HOH A:622 , HOH A:626 , HOH A:688 , HOH A:905	BINDING SITE FOR RESIDUE HEM A 501
02	AC2	SOFTWARE	ALA A:264 , THR A:268 , HEM A:501 , HOH A:790 , HOH A:900	BINDING SITE FOR RESIDUE SYN A 502
03	AC3	SOFTWARE	ILE A:366 , TRP A:367 , ARG A:375 , ARG A:378 , ALA A:384 , ILE A:385 , HOH A:663	BINDING SITE FOR RESIDUE MES A 503
04	AC4	SOFTWARE	ASP A:68 , THR A:91 , HIS A:92 , TYR A:334 , LYS A:336 , HOH A:630	BINDING SITE FOR RESIDUE GOL A 504
05	AC5	SOFTWARE	GLN A:128 , GLU A:131 , ARG A:132 , HOH A:946	BINDING SITE FOR RESIDUE GOL A 505
06	AC6	SOFTWARE	HIS A:100 , GLY A:396 , GLN A:397 , ALA A:399 , ILE A:401 , HOH A:622 , ASN B:381	BINDING SITE FOR RESIDUE GOL A 506
07	AC7	SOFTWARE	ASP A:121 , ARG A:161	BINDING SITE FOR RESIDUE GOL A 507
08	AC8	SOFTWARE	LYS B:69 , LEU B:86 , ALA B:87 , TRP B:96 , PHE B:107 , PHE B:261 , ALA B:264 , GLY B:265 , THR B:268 , THR B:269 , THR B:327 , PHE B:331 , PRO B:392 , PHE B:393 , GLY B:394 , ARG B:398 , ALA B:399 , CYS B:400 , ILE B:401 , GLY B:402 , ALA B:406 , SYN B:502 , HOH B:605 , HOH B:607 , HOH B:609 , HOH B:617 , HOH B:626 , HOH B:799	BINDING SITE FOR RESIDUE HEM B 501
09	AC9	SOFTWARE	ALA B:264 , THR B:268 , HEM B:501 , HOH B:833	BINDING SITE FOR RESIDUE SYN B 502
10	BC1	SOFTWARE	ASP B:68 , THR B:91 , HIS B:92 , TYR B:334 , LYS B:336 , HOH B:866 , HOH B:883	BINDING SITE FOR RESIDUE GOL B 503
11	BC2	SOFTWARE	HIS B:100 , GLN B:397 , ALA B:399 , HOH B:607	BINDING SITE FOR RESIDUE GOL B 504

(no "SS Bond" information available for 4HGG)

(no "Cis Peptide Bond" information available for 4HGG)

(no "SAP(SNP)/Variant" information available for 4HGG)

(no "PROSITE Motif" information available for 4HGG)

(no "Exon" information available for 4HGG)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:435
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4hgga_ A: Cytochrome P450 bm-3                                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhh..hhhhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhh....eeee.hhhhhhhhhhhh.hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhh...hhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh....eeeeee...eee...eee....eeeeehhhhh.hhhhhh......hhhhhhhhhhh.........hhhhh..hhhhhhhhhhhhhhhhhhheeee........eee...eee...eeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hgg A   3 KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVRDFAGDGLATSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDERMQFQEDIKVMNDLVDKIIADRKASGEQSDDLLAHMLNGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPEGFVVKAKSKKIPL 455
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182  ||   210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450     
                                                                                                                                                                                                                185|                                                                                                                                                                                                                                                           
                                                                                                                                                                                                                 204

Chain B from PDB  Type:PROTEIN  Length:441
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d4hggb_ B: Cytochrome P450 bm-3                                                                                                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhh..hhhhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhh....eeee.hhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhh...hhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh....eeeeee...eee...eee....eeeeehhhhh.hhhhhh......hhhhhhhhhhh.........hhhhh..hhhhhhhhhhhhhhhhhhheeee........eee...eee...eeeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hgg B   3 KEMPQPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESRFDKNLSQALKFVRDFAGDGLATSWTHEKNWKKAHNILLPSFSQQAMKGYHAMMVDIAVQLVQKWERLNADEHIEVPEDMTRLTLDTIGLCGFNYRFNSFYRDQPHPFITSMVRALDERMNKENKRQFQEDIKVMNDLVDKIIADRKASGEQSDDLLAHMLNGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPSAIPQHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLTLKPEGFVVKAKSKKIPL 455
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182    || 204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454 
                                                                                                                                                                                                                  187|                                                                                                                                                                                                                                                               
                                                                                                                                                                                                                   200

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Class: All alpha proteins (14657)

Fold: Cytochrome P450 (480)

Superfamily: Cytochrome P450 (480)

Family: Cytochrome P450 (323)

Protein domain: Cytochrome P450 bm-3 (60)

Bacillus megaterium [TaxId: 1404] (60)

1a	d4hgga_	A:
1b	d4hggb_	B:

(no "CATH Domain" information available for 4HGG)

(no "Pfam Domain" information available for 4HGG)

Asymmetric Unit(hide GO term definitions)

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1bu7	CRYOGENIC STRUCTURE OF CYTOCHROME P450BM-3 HEME DOMAIN
1jpz	CRYSTAL STRUCTURE OF A COMPLEX OF THE HEME DOMAIN OF P450BM -3 WITH N-PALMITOYLGLYCINE

Description

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Ligands, Modified Residues, Ions (4, 11)

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