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(-) Description

Title :  CRYSTAL STRUCTURE OF ARSAB IN COMPLEX WITH PHENOL.
 
Authors :  S. A. Newmister, C. H. Chan, J. C. Escalante-Semerena, I. Rayment
Date :  02 Oct 12  (Deposition) - 24 Oct 12  (Release) - 30 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transferase, Transferase-Substrate Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. A. Newmister, C. H. Chan, J. C. Escalante-Semerena, I. Rayment
Structural Insights Into The Function Of The Nicotinate Mononucleotide:Phenol/P-Cresol Phosphoribosyltransferase (Arsab) Enzyme From Sporomusa Ovata.
Biochemistry V. 51 8571 2012
PubMed-ID: 23039029  |  Reference-DOI: 10.1021/BI301142H

(-) Compounds

Molecule 1 - ARSA
    Chains: A
    EC Number: 2.4.2.21
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PARSAB22
    Expression System Strain: JE13607
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ARSA
    Organism Scientific: SPOROMUSA OVATA
    Organism Taxid: 2378
 
Molecule 2 - ARSB
    Chains: B
    EC Number: 2.4.2.21
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PARSAB22
    Expression System Strain: JE13607
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ARSB
    Organism Scientific: SPOROMUSA OVATA
    Organism Taxid: 2378

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2IPH1Ligand/IonPHENOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:87 , MET A:177 , LEU A:317 , GLU A:319 , HOH A:901 , PRO B:30BINDING SITE FOR RESIDUE IPH A 801
2AC2SOFTWAREGLN B:190 , PRO B:191 , LEU B:192 , LEU B:195 , ASN B:204BINDING SITE FOR RESIDUE EDO B 901
3AC3SOFTWAREPHE A:105 , ASP A:328 , HIS B:100 , GLN B:102 , SER B:312 , ASN B:315BINDING SITE FOR RESIDUE EDO B 902

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HDS)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Pro B:193 -Gly B:194

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HDS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HDS)

(-) Exons   (0, 0)

(no "Exon" information available for 4HDS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:333
                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4hdsa_ A: automated matches                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh...hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh........eeeeeeee.hhhhhhh......hhhhhhhhhhhh...hhhhhhhhhh..eeeeeeee...........ee................hhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhhhhh.hhhhhhh......hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh..eee..hhhhhhhhhhhhhhhhhhhh.ee......hhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hds A   2 SLLQATVAKIMRPDTVIKDQVKTKLAGVLQSAGSLGRLEDMVEQYAGITGELNPALPKPCMVVASADHGVARRVVSAYPIETTIHMTANYLISQGASANAFANFCGADMVVVDMGVAGDLSYVPGLWHRKIAYGTQDFTEGPAMTREQAIQAVETGIDIVNDRVKHGNRCFCLGEMGIGNTTSSATIVGAFTGLAPEKVTGRGSRLKTKMEIVGRALAVNKPNPQDGLDVLAKVGGFELGALAGVILGSAANRCAVVIDGLNTTAAALIANVIHPLSKEYMFASHLSGEPAHSIALRQLQLEACLELGVRLGEGIGASMVVDMLYVAIKLLNN 339
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201  ||   216       226       236       246       256       266       276       286       296       306       316       326       336   
                                                                                                                                                                                                                                    204|                                                                                                                                 
                                                                                                                                                                                                                                     210                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:326
                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4hdsb_ B: automated matches                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh....hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh........eeeeeeee.......hhhhhhhhhhh..hhhhhhhhhh..eeeeeeee..........eee........hhhhh...hhhhhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh..eee..hhhhhhhhhhhhhhhhhhhh.ee........hhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh.hhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hds B   2 LEELIAAIKPLDSIAMEQCQRRVDNLTKPLNSLHSFEHIACKLAGISGNPRPRALEKSIIIMAADNGVAQMTTAARLTGFCQGQAPIQVFAAHVQARLIMVDIGVAADLPHSPAVCRKKLAYGSRNSTEGPAMTRQQAIQAIEVGVRIAQAEIARGCQVIGLGEMGLGGLAAAMAIVACCHGQPLPGLAGREAELVNTAIAVNRPNAADPLDILTKVGGLAIAGLVGVILGAAAGRAAVVLDGLATSTAALIAINLVPDVKPYLIGSHFAAEPAHETALALLDVPAYLQLKMNLGEGTGAALGMSVINATLHMLNDMKTFGEAEVA 333
                                    11        21        31        41        51        61        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327      
                                                                                               70|                                                                                                                                                                                                                                                                
                                                                                                77
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HDS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HDS)

(-) Gene Ontology  (5, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        F6MZ55_9FIRM | F6MZ55: 4hdk 4hdm 4hdn 4hdr
        F6MZ56_9FIRM | F6MZ56: 4hdk 4hdm 4hdn 4hdr

(-) Related Entries Specified in the PDB File

4hdk SAME PROTEIN IN COMPLEX WITH PHLOROGLUCINOL.
4hdm SAME PROTEIN IN COMPLEX WITH P-CRESOL.
4hdn SAME PROTEIN IN THE SUBSTRATE-FREE STATE.
4hdr SAME PROTEIN IN COMPLEX WITH 5,6-DIMETHYLBENZIMIDAZOLE.