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(-) Description

Title :  CRYSTAL STRUCTURE OF ARSAB IN COMPLEX WITH PHLOROGLUCINOL
 
Authors :  S. A. Newmister, C. H. Chan, J. C. Escalante-Semerena, I. Rayment
Date :  02 Oct 12  (Deposition) - 24 Oct 12  (Release) - 30 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transferase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. A. Newmister, C. H. Chan, J. C. Escalante-Semerena, I. Rayment
Structural Insights Into The Function Of The Nicotinate Mononucleotide:Phenol/P-Cresol Phosphoribosyltransferase (Arsab) Enzyme From Sporomusa Ovata.
Biochemistry V. 51 8571 2012
PubMed-ID: 23039029  |  Reference-DOI: 10.1021/BI301142H

(-) Compounds

Molecule 1 - ARSA
    Chains: A
    EC Number: 2.4.2.21
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PARSAB22
    Expression System Strain: JE13607
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ARSA
    Organism Scientific: SPOROMUSA OVATA
    Organism Taxid: 2378
 
Molecule 2 - ARSB
    Chains: B
    EC Number: 2.4.2.21
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PARSAB22
    Expression System Strain: JE13607
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ARSB
    Organism Scientific: SPOROMUSA OVATA
    Organism Taxid: 2378

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
113X2Ligand/IonBENZENE-1,3,5-TRIOL
2CL1Ligand/IonCHLORIDE ION
3EDO3Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:129 , ARG A:130 , ARG B:132BINDING SITE FOR RESIDUE CL A 701
2AC2SOFTWAREMET A:87 , MET A:177 , GLU A:319 , HOH A:871 , HOH A:878 , THR B:28 , LYS B:29 , PRO B:30 , PHE B:327 , HOH B:507BINDING SITE FOR RESIDUE 13X A 702
3AC3SOFTWAREGLY A:178 , GLY A:180 , ASN A:181 , THR A:182 , HOH A:847 , HOH A:916BINDING SITE FOR RESIDUE EDO A 703
4AC4SOFTWAREASN A:104 , PHE A:105 , HIS B:319 , HOH B:501BINDING SITE FOR RESIDUE EDO B 401
5AC5SOFTWAREVAL A:29 , ALA A:33 , ARG B:83 , GLY B:86 , ALA B:92 , PRO B:93 , GLU B:303BINDING SITE FOR RESIDUE 13X B 402
6AC6SOFTWAREPHE A:105 , ASP A:328 , HIS B:100 , SER B:312 , ASN B:315 , HOH B:550BINDING SITE FOR RESIDUE EDO B 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HDK)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Pro B:193 -Gly B:194

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HDK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HDK)

(-) Exons   (0, 0)

(no "Exon" information available for 4HDK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:332
                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4hdka_ A: automated matches                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh...hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.......eeeeeeeee.hhhhhhh...hhhhhhhhhhhh...hhhhhhhhhh..eeeeeeee...........ee................hhhhhhhhhhhhhhhhhhhhh..eeeeeeeee..hhhhhhhhhhhhhhh.hhhhhhh........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh..eee..hhhhhhhhhhhhhhh.hhhh.ee......hhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hdk A   2 SLLQATVAKIMRPDTVIKDQVKTKLAGVLQSAGSLGRLEDMVEQYAGITGELNPALPKPCMVVASADHGVARRVVPIETTIHMTANYLISQGASANAFANFCGADMVVVDMGVAGDLSYVPGLWHRKIAYGTQDFTEGPAMTREQAIQAVETGIDIVNDRVKHGNRCFCLGEMGIGNTTSSATIVGAFTGLAPEKVTGRGTGISLKTKMEIVGRALAVNKPNPQDGLDVLAKVGGFELGALAGVILGSAANRCAVVIDGLNTTAAALIANVIHPLSKEYMFASHLSGEPAHSIALRQLQLEACLELGVRLGEGIGASMVVDMLYVAIKLLNN 343
                                    11        21        31        41        51        61        71    ||  84        94       104       114       124       134       144       154       164       174       184       194       204   ||  217       227       237       247       257       267       277       287       297       307       317       327  ||   341  
                                                                                                     76|                                                                                                                             208|                                                                                                                   330|        
                                                                                                      80                                                                                                                              212                                                                                                                    335        


Chain B from PDB  Type:PROTEIN  Length:327
                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4hdkb_ B: automated matches                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh....hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh........eeeeeeee.......hhhhhhhhhhh..hhhhhhhhhhheeeeeeeee..........eee................hhhhhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh..eee..hhhhhhhhhhhhhhhhhhhh.ee........hhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh.hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hdk B   2 LEELIAAIKPLDSIAMEQCQRRVDNLTKPLNSLHSFEHIACKLAGISGNPRPRALEKSIIIMAADNGVAQMTTAARLTGFCQGQAPIQVFAAHVQARLIMVDIGVAADLPHSPAVCRKKLAYGSRNSTEGPAMTRQQAIQAIEVGVRIAQAEIARGCQVIGLGEMGLGGLAAAMAIVACCHGQPLPGLAGREAELVNTAIAVNRPNAADPLDILTKVGGLAIAGLVGVILGAAAGRAAVVLDGLATSTAALIAINLVPDVKPYLIGSHFAAEPAHETALALLDVPAYLQLKMNLGEGTGAALGMSVINATLHMLNDMKTFGEAEVAV 334
                                    11        21        31        41        51        61        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       
                                                                                               70|                                                                                                                                                                                                                                                                 
                                                                                                77
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HDK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HDK)

(-) Gene Ontology  (5, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Pro B:193 - Gly B:194   [ RasMol ]  
 

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        F6MZ55_9FIRM | F6MZ55: 4hdm 4hdn 4hdr 4hds
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(-) Related Entries Specified in the PDB File

4hdm 4hdn 4hdr 4hds