4HAB - JenaLib

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Title :   CRYSTAL STRUCTURE OF PLK1 POLO-BOX DOMAIN IN COMPLEX WITH PL-49

Authors :   W. C. Lee, J. H. Song, H. Y. Kim

Date :   26 Sep 12 (Deposition) - 03 Apr 13 (Release) - 22 May 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.65

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,D  (1x)
Biol. Unit 2: B,E  (1x)
Biol. Unit 3: C,F  (1x)

Keywords :   Polo-Box Domain, Phosphoprotein-Binding Domain, Transferase- Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. N. Murugan, J. E. Park, D. Lim, M. Ahn, C. Cheong, T. Kwon, K. Y. Nam, S. H. Choi, B. Y. Kim, D. Y. Yoon, M. B. Yaffe, D. Y. Yu, K. S. Lee, J. K. Bang
Development Of Cyclic Peptomer Inhibitors Targeting The Polo-Box Domain Of Polo-Like Kinase 1.
Bioorg. Med. Chem. V. 21 2623 2013
PubMed-ID: 23498919 | Reference-DOI: 10.1016/J.BMC.2013.02.020

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE PLK1
	Chains	:	A, B, C
	EC Number	:	2.7.11.21
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	PLK, PLK1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	POLO-LIKE KINASE 1, PLK-1, SERINE/THREONINE-PROTEIN KINASE 13, STPK13

Molecule 2 - PL-49
	Chains	:	D, E, F
	Engineered	:	YES
	Other Details	:	SYNTHETIC PEPTIDE PL-49
	Synthetic	:	YES

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A			D
Biological Unit 2 (1x)	:		B			E
Biological Unit 3 (1x)	:			C			F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 15)

No.	Name	Count	Type	Full Name
1	11Q	3	Mod. Amino Acid	1-(CYCLOHEXYLMETHYL)-L-PROLINE
2	CXS	5	Ligand/Ion	3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
3	NH2	3	Mod. Amino Acid	AMINO GROUP
4	PO4	1	Ligand/Ion	PHOSPHATE ION
5	TPO	3	Mod. Amino Acid	PHOSPHOTHREONINE

Biological Unit 1 (5, 6)

No.	Name	Count	Type	Full Name
1	11Q	1	Mod. Amino Acid	1-(CYCLOHEXYLMETHYL)-L-PROLINE
2	CXS	2	Ligand/Ion	3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
3	NH2	1	Mod. Amino Acid	AMINO GROUP
4	PO4	1	Ligand/Ion	PHOSPHATE ION
5	TPO	1	Mod. Amino Acid	PHOSPHOTHREONINE

Biological Unit 2 (4, 4)

No.	Name	Count	Type	Full Name
1	11Q	1	Mod. Amino Acid	1-(CYCLOHEXYLMETHYL)-L-PROLINE
2	CXS	1	Ligand/Ion	3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
3	NH2	1	Mod. Amino Acid	AMINO GROUP
4	PO4	-1	Ligand/Ion	PHOSPHATE ION
5	TPO	1	Mod. Amino Acid	PHOSPHOTHREONINE

Biological Unit 3 (4, 5)

No.	Name	Count	Type	Full Name
1	11Q	1	Mod. Amino Acid	1-(CYCLOHEXYLMETHYL)-L-PROLINE
2	CXS	2	Ligand/Ion	3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
3	NH2	1	Mod. Amino Acid	AMINO GROUP
4	PO4	-1	Ligand/Ion	PHOSPHATE ION
5	TPO	1	Mod. Amino Acid	PHOSPHOTHREONINE

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:436 , ASN A:437 , TRP A:514 , PHE A:515 , ARG A:516 , CXS A:602	BINDING SITE FOR RESIDUE CXS A 601
2	AC2	SOFTWARE	PHE A:515 , ARG A:516 , CXS A:601 , GLU B:504 , LEU B:505 , ALA B:506	BINDING SITE FOR RESIDUE CXS A 602
3	AC3	SOFTWARE	ASN A:385 , ARG A:584 , HOH A:704 , HOH A:725 , HOH A:726 , HIS C:538	BINDING SITE FOR RESIDUE PO4 A 603
4	AC4	SOFTWARE	ASN B:437 , THR B:513 , TRP B:514 , PHE B:515 , ARG B:516	BINDING SITE FOR RESIDUE CXS B 601
5	AC5	SOFTWARE	LEU B:394 , VAL B:395 , PHE C:534 , SER C:578 , ARG C:581	BINDING SITE FOR RESIDUE CXS C 601
6	AC6	SOFTWARE	THR C:513 , TRP C:514 , ARG C:516	BINDING SITE FOR RESIDUE CXS C 602

(no "SS Bond" information available for 4HAB)

(no "Cis Peptide Bond" information available for 4HAB)

(no "SAP(SNP)/Variant" information available for 4HAB)

(no "PROSITE Motif" information available for 4HAB)

(no "Exon" information available for 4HAB)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh....eeeeee.....eeeeee....eeeee....eeee.....eeeee.....eeeee.......hhhhhhhhhhhhhhhhhhh....................eeeeee...eeeeee....eeeee.....eeeee....eeeee.....eeeeehhhhhhhh.hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hab A 371 DCHLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERDGTESYLTVSSHPNSLMKKITLLKYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAIILHLSNGSVQINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSS 593
                                   380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590

Chain B from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.........hhhhhhhhhhh....eeeeee.....eeeeee....eeeee....eeee.....eeeee.....eeeee....hhhhhhhhhhhhhhhhhhh....................eeeeee...eeeeee....eeeee.....eeeee....eeeee.....eeeeehhhhhhhh.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hab B 373 HLSDMLQQLHSVNASKPSERGLVRQEEAEDPACIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERDGTESYLTVSNSLMKKITLLKYFRNYMSEHLLKAGANITPREGDELARLPYLRTWFRTRSAIILHLSNGSVQINFFQDHTKLILCPLMAAVTYIDEKRDFRTYRLSLLEEYGCCKELASRLRYARTMVDKLLSS 593
                                   382       392       402       412       422       432       442       452       462   ||  475       485       495       505       515       525       535       545       555       565       575       585        
                                                                                                                       466|                                                                                                                           
                                                                                                                        470

Chain C from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.......eeeeee.....eeeeee....eeeee....eeee........ee............hhhhhhhhhhhhhhhhhhh..............eeeeee...eeeeee....eeeee.....eeee....eee...............hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hab C 373 HLSDMLQQLHSVNASKEDIPIFWVSKWVDYSDKYGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERDGTESYLTNSLMKKITLLKYFRNYMSEHLLKAGANITPRELPYLRTWFRTRSAIILHLSNGSVQINFFQDHTKLILCPLVTYIDEKRDFRTYRLSLLCKELASRLRYARTMVDKLLSS 593
                                   382     ||407       417       427       437       447       457      |472       482       492       508       518       528       538       551       561     ||576       586       
                                         388|||                                                       464|                            501|                                   546|              567|                    
                                          401||                                                        470                             508                                    550               573                    
                                           402|                                                                                                                                                                        
                                            406

Chain D from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 4hab D   1 pLHStMx   7
                            |   | |
                            1-11Q |
                                5-TPO
                                  7-NH2

Chain E from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 4hab E   1 pLHStMx   7
                            |   | |
                            |   | |
                            1-11Q |
                                5-TPO
                                  7-NH2

Chain F from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 4hab F   1 pLHStMx   7
                            |   | |
                            |   | |
                            1-11Q |
                                5-TPO
                                  7-NH2

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4HAB)

(no "CATH Domain" information available for 4HAB)

(no "Pfam Domain" information available for 4HAB)

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	Cis Peptide Bonds
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 15)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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Gene Ontology (73, 73)

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