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(-) Description

Title :  CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 E175Q/T1776R/Q177G MUTANT (REDUCED FORM)
 
Authors :  A. Nishizawa, A. Harada, M. Senda, Y. Tachihara, D. Muramatsu, S. Kishi S. Mori, K. Sugiyama, T. Senda, S. Kimura
Date :  18 Sep 12  (Deposition) - 09 Oct 13  (Release) - 09 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Flavoprotein, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Nishizawa, A. Harada, M. Senda, Y. Tachihara, D. Muramatsu, S. Kishigami, S. Mori, K. Sugiyama, T. Senda, S. Kimura
Random Mutagenesis With The Project Assessment For Complete Conversion Of Co-Factor Specificity Of A Ferredoxin Reductase Bpha4
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BIPHENYL DIOXYGENASE FERREDOXIN REDUCTASE SUBUNIT
    Chains: A
    EC Number: 1.18.1.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: BPHA4
    Mutation: YES
    Organism Scientific: ACIDOVORAX
    Organism Taxid: 358220
    Strain: KKS102

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric Unit (4, 8)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FMT5Ligand/IonFORMIC ACID
3GOL1Ligand/IonGLYCEROL
4NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Biological Unit 1 (4, 16)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FMT10Ligand/IonFORMIC ACID
3GOL2Ligand/IonGLYCEROL
4NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:14 , GLY A:16 , LEU A:17 , ALA A:18 , VAL A:38 , ASP A:40 , GLU A:41 , ARG A:48 , PRO A:49 , VAL A:80 , ALA A:82 , ALA A:108 , THR A:109 , GLY A:110 , LEU A:129 , ARG A:130 , ILE A:156 , GLU A:159 , GLY A:272 , ASP A:273 , GLU A:289 , THR A:290 , TRP A:291 , ALA A:294 , TYR A:319 , TRP A:320 , HOH A:609 , HOH A:614 , HOH A:617 , HOH A:628 , HOH A:634BINDING SITE FOR RESIDUE FAD A 501
2AC2SOFTWAREGLY A:152 , GLY A:154 , VAL A:155 , ILE A:156 , GLN A:175 , ARG A:176 , SER A:182 , GLY A:234 , ILE A:235 , GLY A:236 , GOL A:508BINDING SITE FOR RESIDUE NAP A 502
3AC3SOFTWAREASP A:54 , PHE A:55 , HIS A:58 , GLY A:59 , ASP A:60 , ASP A:215BINDING SITE FOR RESIDUE FMT A 503
4AC4SOFTWAREALA A:115 , LEU A:116 , VAL A:126BINDING SITE FOR RESIDUE FMT A 504
5AC5SOFTWAREGLY A:59 , ALA A:61 , GLU A:62 , ARG A:136BINDING SITE FOR RESIDUE FMT A 505
6AC6SOFTWAREGLU A:43 , GLU A:62 , HOH A:606 , HOH A:618BINDING SITE FOR RESIDUE FMT A 506
7AC7SOFTWAREPRO A:9 , VAL A:10 , VAL A:11 , ILE A:35 , THR A:36 , PRO A:101BINDING SITE FOR RESIDUE FMT A 507
8AC8SOFTWAREPRO A:113 , LEU A:129 , ARG A:130 , VAL A:233 , GLY A:236 , NAP A:502BINDING SITE FOR RESIDUE GOL A 508

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4H50)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:8 -Pro A:9

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4H50)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4H50)

(-) Exons   (0, 0)

(no "Exon" information available for 4H50)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:399
                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..hhhhhhhhhhhhhhh....eeeee........hhhhhhhhhhhhhhhhh.........eeeee...eeeee....eeee....eee..eeee...eee..hhhhh.....ee...hhhhhhhhhh......eeeee..hhhhhhhhhhhhhhh.eeeee...........hhhhhhhhhhhhhhh.eeee....eeee...eeee....eee..eeee...eee.hhhhhhhh......ee...........eee....eeee......ee...hhhhhhhhhhhhhhhhhh..........eeeeee..eeeeeee.....eeeeeee......eeeeeeee..eeeeeeee.hhhhhhhhhhhhhh....hhhhhhh...hhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h50 A   6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVQRGPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTAPGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATCVNNARDFAPLRRLLAVGAKPDRAALADPATDLRKLAA 404
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4H50)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4H50)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4H50)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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  4h50
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  1.18.1.3
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        E7FJB9_9BURK | E7FJB9: 4h4p 4h4q 4h4r 4h4s 4h4t 4h4u 4h4v 4h4w 4h4x 4h4y 4h4z

(-) Related Entries Specified in the PDB File

4h4p 4h4q 4h4r 4h4s 4h4t 4h4u 4h4v 4h4w 4h4x 4h4y 4h4z