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(-) Description

Title :  CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE, BPHA4 T176R MUTANT (REDUCED FORM)
 
Authors :  A. Nishizawa, A. Harada, M. Senda, Y. Tachihara, D. Muramatsu, S. Kishi S. Mori, K. Sugiyama, T. Senda, S. Kimura
Date :  18 Sep 12  (Deposition) - 09 Oct 13  (Release) - 09 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Flavoprotein, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Nishizawa, A. Harada, M. Senda, Y. Tachihara, D. Muramatsu, S. Kishigami, S. Mori, K. Sugiyama, T. Senda, S. Kimura
Random Mutagenesis With The Project Assessment For Complete Conversion Of Co-Factor Specificity Of A Ferredoxin Reductase Bpha4
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BIPHENYL DIOXYGENASE FERREDOXIN REDUCTASE SUBUNIT
    Chains: A
    EC Number: 1.18.1.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: BPHA4
    Mutation: YES
    Organism Scientific: ACIDOVORAX
    Organism Taxid: 358220
    Strain: KKS102

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FMT7Ligand/IonFORMIC ACID
3NDP1Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
Biological Unit 1 (3, 18)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FMT14Ligand/IonFORMIC ACID
3NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:154 , VAL A:155 , ILE A:156 , GLU A:175 , ARG A:176 , GLN A:177 , SER A:182 , ALA A:184 , GLY A:234 , ILE A:235 , GLY A:236 , GLU A:286 , ILE A:288 , GLU A:289 , TYR A:319 , FAD A:502 , HOH A:612 , HOH A:619 , HOH A:656 , HOH A:691 , HOH A:696 , HOH A:724BINDING SITE FOR RESIDUE NDP A 501
2AC2SOFTWAREGLY A:14 , GLY A:16 , LEU A:17 , ALA A:18 , VAL A:38 , ASP A:40 , GLU A:41 , ARG A:48 , PRO A:49 , VAL A:80 , ALA A:82 , ALA A:108 , THR A:109 , GLY A:110 , LEU A:129 , ARG A:130 , GLU A:159 , GLY A:272 , ASP A:273 , GLU A:289 , THR A:290 , TRP A:291 , ALA A:294 , TYR A:319 , TRP A:320 , SER A:321 , NDP A:501 , FMT A:504 , HOH A:602 , HOH A:603 , HOH A:606 , HOH A:616 , HOH A:618 , HOH A:623 , HOH A:637 , HOH A:646 , HOH A:677 , HOH A:705BINDING SITE FOR RESIDUE FAD A 502
3AC3SOFTWAREPHE A:55 , GLY A:59 , ALA A:61 , ARG A:136 , HOH A:719BINDING SITE FOR RESIDUE FMT A 503
4AC4SOFTWAREASP A:40 , FAD A:502BINDING SITE FOR RESIDUE FMT A 504
5AC5SOFTWAREARG A:262 , ASP A:267 , TYR A:269 , HOH A:650BINDING SITE FOR RESIDUE FMT A 505
6AC6SOFTWAREPRO A:49 , PRO A:50 , ARG A:225 , HOH A:725 , HOH A:739BINDING SITE FOR RESIDUE FMT A 506
7AC7SOFTWAREALA A:162 , TYR A:196 , HIS A:197 , GLN A:200 , VAL A:202 , HOH A:767BINDING SITE FOR RESIDUE FMT A 507
8AC8SOFTWAREALA A:8 , GLY A:33 , LEU A:34BINDING SITE FOR RESIDUE FMT A 508
9AC9SOFTWARETHR A:109 , ASN A:240 , ASP A:241 , ALA A:242 , LEU A:243 , ALA A:244 , HOH A:637BINDING SITE FOR RESIDUE FMT A 509

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4H4U)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:8 -Pro A:9

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4H4U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4H4U)

(-) Exons   (0, 0)

(no "Exon" information available for 4H4U)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:401
                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee..hhhhhhhhhhhhhhh....eeeee........hhhhhhhhhhhhhhhhh..........eeee...eeeee....eeee....eee..eeee...eee..hhhhh.....eee..hhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhh..eee....eeeee..eeee....eee..eeee...eee.hhhhhhhh......ee...........eee....eeeee....eee...hhhhhhhhhhhhhhhhhh..........eeeeee..eeeeeee.....eeeee.........eeeeeee..eeeeeeee.hhhhhhhhhhhhhh....hhhhhhh...hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h4u A   5 ALKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVERQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTAPGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATCVNNARDFAPLRRLLAVGAKPDRAALADPATDLRKLAAA 405
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4H4U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4H4U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4H4U)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        E7FJB9_9BURK | E7FJB9: 4h4p 4h4q 4h4r 4h4s 4h4t 4h4v 4h4w 4h4x 4h4y 4h4z 4h50

(-) Related Entries Specified in the PDB File

4h4p 4h4q 4h4r 4h4s 4h4t 4h4v 4h4w 4h4x 4h4y 4h4z 4h50