4H41 - JenaLib

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Title :   CRYSTAL STRUCTURE OF A PUTATIVE ALPHA-L-FUCOSIDASE (BT_0435) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.80 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   14 Sep 12 (Deposition) - 10 Oct 12 (Release) - 17 Oct 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A,B,C

Keywords :   Hydrolase, Carbohydrate Metabolism, Host Glycans, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Alpha-L-Fucosidase (Bt_0435 From Bacteroides Thetaiotaomicron Vpi-5482 At 1. 80 A Resolution
To Be Published
PubMed: search

Molecule 1 - PUTATIVE ALPHA-L-FUCOSIDASE
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	SPEEDET
	Expression System Strain	:	HK100
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	BT_0435, NP_809348.1
	Organism Scientific	:	BACTEROIDES THETAIOTAOMICRON
	Organism Taxid	:	226186
	Strain	:	VPI-5482

		1	2	3
Asymmetric/Biological Unit	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (7, 58)

No.	Name	Count	Type	Full Name
1	1PE	7	Ligand/Ion	PENTAETHYLENE GLYCOL
2	MSE	38	Mod. Amino Acid	SELENOMETHIONINE
3	NA	1	Ligand/Ion	SODIUM ION
4	PE4	2	Ligand/Ion	2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
5	PG4	5	Ligand/Ion	TETRAETHYLENE GLYCOL
6	PG6	2	Ligand/Ion	1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE
7	UNL	3	Ligand/Ion	UNKNOWN LIGAND

Asymmetric Unit (17, 17)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TYR A:152 , TRP A:153 , GLY A:156	BINDING SITE FOR RESIDUE 1PE A 402
02	AC2	SOFTWARE	HIS A:260 , LYS A:291	BINDING SITE FOR RESIDUE 1PE A 403
03	AC3	SOFTWARE	ILE A:162 , GLU A:163 , LYS A:166 , TYR A:167 , ASP A:170 , ALA A:205 , PE4 A:405 , HOH A:655 , HOH A:774	BINDING SITE FOR RESIDUE PE4 A 404
04	AC4	SOFTWARE	ASP A:157 , SER A:159 , TRP A:160 , PE4 A:404	BINDING SITE FOR RESIDUE PE4 A 405
05	AC5	SOFTWARE	TYR A:104 , HOH A:656	BINDING SITE FOR RESIDUE 1PE A 406
06	AC6	SOFTWARE	TYR A:114 , LYS A:117 , LYS A:118 , TYR A:167	BINDING SITE FOR RESIDUE PG4 A 407
07	AC7	SOFTWARE	ARG A:204 , GLU A:261 , PG4 A:409 , HOH A:675 , HOH A:714	BINDING SITE FOR RESIDUE PG4 A 408
08	AC8	SOFTWARE	LYS A:208 , PG4 A:408 , HOH A:676	BINDING SITE FOR RESIDUE PG4 A 409
09	AC9	SOFTWARE	HIS B:70 , TYR B:104 , TRP B:153 , GLU B:191 , HOH B:757	BINDING SITE FOR RESIDUE 1PE B 402
10	BC1	SOFTWARE	ASN B:139 , LYS B:141 , LYS B:181 , GLY B:184 , HOH B:672	BINDING SITE FOR RESIDUE PG6 B 403
11	BC2	SOFTWARE	ASP B:157 , SER B:159 , LYS B:197 , ASP B:201 , NA B:405	BINDING SITE FOR RESIDUE PG6 B 404
12	BC3	SOFTWARE	SER B:159 , PG6 B:404	BINDING SITE FOR RESIDUE NA B 405
13	BC4	SOFTWARE	TYR B:152 , TRP B:153 , GLY B:156 , TRP B:224	BINDING SITE FOR RESIDUE 1PE B 406
14	BC5	SOFTWARE	GLN B:295 , ASP B:332	BINDING SITE FOR RESIDUE PG4 B 407
15	BC6	SOFTWARE	HIS C:70 , TYR C:104 , 1PE C:403 , HOH C:617 , HOH C:629	BINDING SITE FOR RESIDUE 1PE C 402
16	BC7	SOFTWARE	TYR C:152 , TRP C:153 , THR C:155 , GLY C:156 , TRP C:224 , MSE C:232 , 1PE C:402	BINDING SITE FOR RESIDUE 1PE C 403
17	BC8	SOFTWARE	ASP C:95 , LYS C:181 , GLY C:184 , HOH C:665 , HOH C:667	BINDING SITE FOR RESIDUE PG4 C 404

(no "SS Bond" information available for 4H41)

Asymmetric/Biological Unit

No.	Residues
1	Glu A:67	-	Ile A:68
2	Arg A:310	-	Phe A:311
3	Phe A:337	-	Glu A:338
4	Glu B:67	-	Ile B:68
5	Arg B:310	-	Phe B:311
6	Phe B:337	-	Glu B:338
7	Glu C:67	-	Ile C:68
8	Arg C:310	-	Phe C:311
9	Phe C:337	-	Glu C:338

(no "SAP(SNP)/Variant" information available for 4H41)

(no "PROSITE Motif" information available for 4H41)

(no "Exon" information available for 4H41)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:318
                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............eeeeee............hhhhhhhhhhhhhhh...eeee...ee..ee...hhhhhhh.......hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeee.........hhhhhhhhhhhhhhhhh....eee...................hhhhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhhhh..eeeee...............hhhhhhhhhhhhhhh...eeee.hhhhhh......hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4h41 A  46 LESKLIVPKNNGLKITGTFLDEISHDIPHQNWGEKEWDLDFQHmKRIGIDTVImIRSGYRKFmTYPSPYLLKKGCYmPSVDLVDmYLRLAEKYNmKFYFGLYDSGRYWDTGDLSWEIEDNKYVIDEVWKmYGEKYKSFGGWYISGEISRATKGAIDAFRAmGKQCKDISNGLPTFISPWIDGKKAIGKLTREDAVSVQQHEKEWNEIFDGIHEVVDACAFQDGHIDYDELDAFFTVNKKLADKYGmQCWTNAESFDRDmPIRFLPIKFDKLRmKLEAAKRAGYDKAITFEFSHFmSPQSAYLQAGHLYDRYREYFEIK 366
                                    55        65        75        85   |    95   |   105  |    115      |125    |  135    |  145       155       165       175       185       195       205|      215       225     ||238       248       258       268       278       288     | 298       308       318  |    328       338    |  348       358        
                                                                      89-MSE    99-MSE  108-MSE       122-MSE 130-MSE   140-MSE                            175-MSE                        206-MSE                  231|                                                        294-MSE      307-MSE       321-MSE               343-MSE                   
                                                                                                                                                                                                                    235

Chain B from PDB  Type:PROTEIN  Length:322
                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeee............hhhhhhhhhhhhhhh...eeee...ee..ee...hhhhhhh.......hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeee.........hhhhhhhhhhhhhhhhh....eee................hhhhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhhhhh.eeeee...............hhhhhhhhhhhhhhh...eeee.hhhhhh.....hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h41 B  39 PKIKAGDLESKLIVPKNNGLKITGTFLDEISHDIPHQNWGEKEWDLDFQHmKRIGIDTVImIRSGYRKFmTYPSPYLLKKGCYmPSVDLVDmYLRLAEKYNmKFYFGLYDSGRYWDTGDLSWEIEDNKYVIDEVWKmYGEKYKSFGGWYISGEISRATKGAIDAFRAmGKQCKDISNGLPTFISPWIDGKKAImREDAVSVQQHEKEWNEIFDGIHEVVDACAFQDGHIDYDELDAFFTVNKKLADKYGmQCWTNAESFDRDmPIRFLPIKFDKLRmKLEAAKRAGYDKAITFEFSHFmSPQSAYLQAGHLYDRYREYFEIK 366
                                    48        58        68        78        88|       98|      108       118   |   128 |     138 |     148       158       168      |178       188       198       208       218       228   ||  244       254       264       274       284       294       304  |    314      |324       334       344       354       364  
                                                                             89-MSE    99-MSE  108-MSE       122-MSE 130-MSE   140-MSE                            175-MSE                        206-MSE                   232-MSE                                                 294-MSE      307-MSE       321-MSE               343-MSE                   
                                                                                                                                                                                                                            239

Chain C from PDB  Type:PROTEIN  Length:321
                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeee............hhhhhhhhhhhhhhh...eeee...ee..ee...hhhhhhh.......hhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeee.........hhhhhhhhhhhhhhhhh....eee......................hhhhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhhhhh.eeeee...............hhhhhhhhhhhhhhh...eeee.hhhhhh......hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h41 C  46 LESKLIVPKNNGLKITGTFLDEISHDIPHQNWGEKEWDLDFQHmKRIGIDTVImIRSGYRKFmTYPSPYLLKKGCYmPSVDLVDmYLRLAEKYNmKFYFGLYDSGRYWDTGDLSWEIEDNKYVIDEVWKmYGEKYKSFGGWYISGEISRATKGAIDAFRAmGKQCKDISNGLPTFISPWIDGKKAImGTGKLTREDAVSVQQHEKEWNEIFDGIHEVVDACAFQDGHIDYDELDAFFTVNKKLADKYGmQCWTNAESFDRDmPIRFLPIKFDKLRmKLEAAKRAGYDKAITFEFSHFmSPQSAYLQAGHLYDRYREYFEIK 366
                                    55        65        75        85   |    95   |   105  |    115      |125    |  135    |  145       155       165       175       185       195       205|      215       225      |235       245       255       265       275       285       295       305 |     315     | 325       335       345       355       365 
                                                                      89-MSE    99-MSE  108-MSE       122-MSE 130-MSE   140-MSE                            175-MSE                        206-MSE                   232-MSE                                                       294-MSE      307-MSE       321-MSE               343-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4H41)

(no "CATH Domain" information available for 4H41)

(no "Pfam Domain" information available for 4H41)

Asymmetric/Biological Unit(hide GO term definitions)

(no "Gene Ontology" information available for 4H41)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Arg A:310 - Phe A:311	[ RasMol ]
		Arg B:310 - Phe B:311	[ RasMol ]
		Arg C:310 - Phe C:311	[ RasMol ]
		Glu A:67 - Ile A:68	[ RasMol ]
		Glu B:67 - Ile B:68	[ RasMol ]
		Glu C:67 - Ile C:68	[ RasMol ]
		Phe A:337 - Glu A:338	[ RasMol ]
		Phe B:337 - Glu B:338	[ RasMol ]
		Phe C:337 - Glu C:338	[ RasMol ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (7, 58)

Sites (17, 17)

SS Bonds (0, 0)

Cis Peptide Bonds (9, 9)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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