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4H41
Asym. Unit
Info
Asym.Unit (670 KB)
Biol.Unit 1 (655 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE ALPHA-L-FUCOSIDASE (BT_0435) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.80 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
14 Sep 12 (Deposition) - 10 Oct 12 (Release) - 17 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Hydrolase, Carbohydrate Metabolism, Host Glycans, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Alpha-L-Fucosidase (Bt_0435 From Bacteroides Thetaiotaomicron Vpi-5482 At 1. 80 A Resolution
To Be Published
[
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Hetero Components
(7, 58)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
1e: PENTAETHYLENE GLYCOL (1PEe)
1f: PENTAETHYLENE GLYCOL (1PEf)
1g: PENTAETHYLENE GLYCOL (1PEg)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2ak: SELENOMETHIONINE (MSEak)
2al: SELENOMETHIONINE (MSEal)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
3a: SODIUM ION (NAa)
4a: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4a)
4b: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)... (PE4b)
5a: TETRAETHYLENE GLYCOL (PG4a)
5b: TETRAETHYLENE GLYCOL (PG4b)
5c: TETRAETHYLENE GLYCOL (PG4c)
5d: TETRAETHYLENE GLYCOL (PG4d)
5e: TETRAETHYLENE GLYCOL (PG4e)
6a: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-ME... (PG6a)
6b: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-ME... (PG6b)
7a: UNKNOWN LIGAND (UNLa)
7b: UNKNOWN LIGAND (UNLb)
7c: UNKNOWN LIGAND (UNLc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
7
Ligand/Ion
PENTAETHYLENE GLYCOL
2
MSE
38
Mod. Amino Acid
SELENOMETHIONINE
3
NA
1
Ligand/Ion
SODIUM ION
4
PE4
2
Ligand/Ion
2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
5
PG4
5
Ligand/Ion
TETRAETHYLENE GLYCOL
6
PG6
2
Ligand/Ion
1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE
7
UNL
3
Ligand/Ion
UNKNOWN LIGAND
[
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:152 , TRP A:153 , GLY A:156
BINDING SITE FOR RESIDUE 1PE A 402
02
AC2
SOFTWARE
HIS A:260 , LYS A:291
BINDING SITE FOR RESIDUE 1PE A 403
03
AC3
SOFTWARE
ILE A:162 , GLU A:163 , LYS A:166 , TYR A:167 , ASP A:170 , ALA A:205 , PE4 A:405 , HOH A:655 , HOH A:774
BINDING SITE FOR RESIDUE PE4 A 404
04
AC4
SOFTWARE
ASP A:157 , SER A:159 , TRP A:160 , PE4 A:404
BINDING SITE FOR RESIDUE PE4 A 405
05
AC5
SOFTWARE
TYR A:104 , HOH A:656
BINDING SITE FOR RESIDUE 1PE A 406
06
AC6
SOFTWARE
TYR A:114 , LYS A:117 , LYS A:118 , TYR A:167
BINDING SITE FOR RESIDUE PG4 A 407
07
AC7
SOFTWARE
ARG A:204 , GLU A:261 , PG4 A:409 , HOH A:675 , HOH A:714
BINDING SITE FOR RESIDUE PG4 A 408
08
AC8
SOFTWARE
LYS A:208 , PG4 A:408 , HOH A:676
BINDING SITE FOR RESIDUE PG4 A 409
09
AC9
SOFTWARE
HIS B:70 , TYR B:104 , TRP B:153 , GLU B:191 , HOH B:757
BINDING SITE FOR RESIDUE 1PE B 402
10
BC1
SOFTWARE
ASN B:139 , LYS B:141 , LYS B:181 , GLY B:184 , HOH B:672
BINDING SITE FOR RESIDUE PG6 B 403
11
BC2
SOFTWARE
ASP B:157 , SER B:159 , LYS B:197 , ASP B:201 , NA B:405
BINDING SITE FOR RESIDUE PG6 B 404
12
BC3
SOFTWARE
SER B:159 , PG6 B:404
BINDING SITE FOR RESIDUE NA B 405
13
BC4
SOFTWARE
TYR B:152 , TRP B:153 , GLY B:156 , TRP B:224
BINDING SITE FOR RESIDUE 1PE B 406
14
BC5
SOFTWARE
GLN B:295 , ASP B:332
BINDING SITE FOR RESIDUE PG4 B 407
15
BC6
SOFTWARE
HIS C:70 , TYR C:104 , 1PE C:403 , HOH C:617 , HOH C:629
BINDING SITE FOR RESIDUE 1PE C 402
16
BC7
SOFTWARE
TYR C:152 , TRP C:153 , THR C:155 , GLY C:156 , TRP C:224 , MSE C:232 , 1PE C:402
BINDING SITE FOR RESIDUE 1PE C 403
17
BC8
SOFTWARE
ASP C:95 , LYS C:181 , GLY C:184 , HOH C:665 , HOH C:667
BINDING SITE FOR RESIDUE PG4 C 404
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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