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(-) Description

Title :  STRUCTURE OF MHPCO-5HN COMPLEX
 
Authors :  J. Kobayashi, H. Yoshida, B. Mikami, H. Hayashi, S. Kamitori, T. Yagi
Date :  13 Sep 12  (Deposition) - 18 Sep 13  (Release) - 02 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Fad-Binding Motif, Oxygenase, Fad, 3-Hydroxypyridine-5-Carboxylic Acid, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Kobayashi, H. Yoshida, B. Mikami, H. Hayashi, S. Kamitori, T. Yagi
Crystal Structure Of 2-Methyl-3-Hydroxypyridiine-5-Carboxylic Acid Oxygenase
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 2-METHYL-3-HYDROXYPYRIDINE-5-CARBOXYLIC ACID OXYGENASE
    Chains: A
    EC Number: 1.14.12.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PET21A
    Gene: MLR6788
    Organism Common: MESORHIZOBIUM LOTI
    Organism Scientific: RHIZOBIUM LOTI
    Organism Taxid: 266835
    Strain: MAFF303099

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 7)

Asymmetric Unit (5, 7)
No.NameCountTypeFull Name
15HN1Ligand/Ion5-HYDROXYPYRIDINE-3-CARBOXYLIC ACID
2BME1Ligand/IonBETA-MERCAPTOETHANOL
3FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
4GOL3Ligand/IonGLYCEROL
5PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (5, 28)
No.NameCountTypeFull Name
15HN4Ligand/Ion5-HYDROXYPYRIDINE-3-CARBOXYLIC ACID
2BME4Ligand/IonBETA-MERCAPTOETHANOL
3FAD4Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
4GOL12Ligand/IonGLYCEROL
5PEG4Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:18 , GLY A:20 , PHE A:21 , ALA A:22 , HIS A:40 , GLU A:41 , LYS A:42 , SER A:43 , ILE A:53 , TYR A:54 , ARG A:106 , SER A:128 , GLU A:129 , ALA A:130 , ALA A:155 , ASP A:156 , LEU A:179 , ARG A:181 , GLY A:287 , ASP A:288 , PRO A:295 , ALA A:298 , GLY A:300 , ALA A:301 , GLY A:302 , 5HN A:403 , HOH A:504 , HOH A:505 , HOH A:516 , HOH A:525 , HOH A:535 , HOH A:561 , HOH A:663 , HOH A:710 , HOH A:746 , HOH A:778 , HOH A:865 , HOH A:910 , HOH A:926BINDING SITE FOR RESIDUE FAD A 401
2AC2SOFTWARETYR A:270 , CYS A:294 , HOH A:571 , HOH A:642 , HOH A:721BINDING SITE FOR RESIDUE BME A 402
3AC3SOFTWARETYR A:82 , ARG A:211 , LEU A:213 , PRO A:295 , ALA A:296 , LEU A:352 , FAD A:401 , HOH A:501 , HOH A:502 , HOH A:601 , HOH A:865BINDING SITE FOR RESIDUE 5HN A 403
4AC4SOFTWARELEU A:73 , GLN A:74 , GLY A:75 , SER A:76 , ASN A:97 , GLU A:219 , PRO A:378 , HOH A:813BINDING SITE FOR RESIDUE GOL A 404
5AC5SOFTWAREARG A:367 , TYR A:375BINDING SITE FOR RESIDUE GOL A 405
6AC6SOFTWARELYS A:169 , GLN A:170 , ASP A:171 , LYS A:274 , ASP A:276 , HOH A:587BINDING SITE FOR RESIDUE GOL A 406
7AC7SOFTWAREASN A:88 , VAL A:91 , GLU A:247 , HOH A:543 , HOH A:694 , HOH A:775BINDING SITE FOR RESIDUE PEG A 407

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4H2Q)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Trp A:206 -Pro A:207
2Val A:238 -Pro A:239

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4H2Q)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4H2Q)

(-) Exons   (0, 0)

(no "Exon" information available for 4H2Q)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:370
                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..hhhhhhhhhhhhhh..eeeee...........eeeeehhhhhhhhhh.hhhhhhh.......eeeee..eeeeeehhhhh.eeeeehhhhhhhhhhhhhhhh.eee....eeeee...eeee....eee..eeee.....hhhhhhhh..eeeeeeeeeeeeeeee..hhhhh......eeeee.......eeeeee....eeeeeeee............hhhhhhhhh..hhhhhhhhh......eeeeeeeee...ee..eee.hhhhhh.hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhee....ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h2q A  10 KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVGRLTLQTGEVLEADLIVGADGVGSKVRDSIGFKQDRWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELYLGLMAPAADPRGSSVPIDLEVWVEMFPFLEPCLIEAAKLKTARYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDLEEGSSVEDALVAWETRIRPITDRCQALSGDYAANRSLSKGNMFTPAALEAARYDPLRRVYSWPQ 379
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4H2Q)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4H2Q)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4H2Q)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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  1.14.12.4
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q988D3_RHILO | Q988D3: 3alj 3all 3alm 3gmb 3gmc 4gf7 4h2n 4h2p 4h2r 4jy2 4jy3 5hxi

(-) Related Entries Specified in the PDB File

3alh MHPCO, UNLIGANDED FORM
3ali MHPCO, 5PA COMPLEX
3alk MHPCO, Y270F MUTANT
4h28
4h2n
4h2p
4h2r