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(-) Description

Title :  CRYSTAL STRUCTURE OF NDOR1
 
Authors :  L. Banci, I. Bertini, V. Calderone, S. Ciofi-Baffoni, M. Mikolajczyk, D. Jaiswal, J Winkelmann
Date :  12 Sep 12  (Deposition) - 17 Apr 13  (Release) - 15 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. Banci, I. Bertini, V. Calderone, S. Ciofi-Baffoni, A. Giachetti, D. Jaiswal, M. Mikolajczyk, M. Piccioli, J. Winkelmann
Molecular View Of An Electron Transfer Process Essential Fo Iron-Sulfur Protein Biogenesis.
Proc. Natl. Acad. Sci. Usa V. 110 7136 2013
PubMed-ID: 23596212  |  Reference-DOI: 10.1073/PNAS.1302378110
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NADPH-DEPENDENT DIFLAVIN OXIDOREDUCTASE 1
    ChainsA, B
    EC Number1.6.-.-
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidGATEWAY PENTR-TEV-D-TOPO PTH-34
    Expression System StrainBL21(DE3) PLYSS
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentFMN-BINDING DOMAIN (UNP RESIDUES 1-161)
    GeneNDOR1, NR1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymNDOR1, NADPH-DEPENDENT FMN AND FAD-CONTAINING OXIDOREDUCTASE, NOVEL REDUCTASE 1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1FMN1Ligand/IonFLAVIN MONONUCLEOTIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:12 , GLN A:13 , THR A:14 , GLY A:15 , THR A:16 , ALA A:17 , ALA A:59 , THR A:60 , THR A:61 , GLY A:62 , GLY A:64 , LEU A:97 , GLY A:98 , ASP A:99 , TYR A:102 , LYS A:104 , PHE A:105 , ASN A:106 , ASP A:132 , HOH A:305 , HOH A:332 , HOH A:339BINDING SITE FOR RESIDUE FMN A 200
2AC2SOFTWARESER B:12 , GLN B:13 , THR B:14 , GLY B:15 , THR B:16 , ALA B:17 , ALA B:59 , THR B:60 , THR B:61 , GLY B:62 , GLY B:64 , LEU B:97 , GLY B:98 , ASP B:99 , TYR B:102 , LYS B:104 , PHE B:105 , ASN B:106 , ASP B:132 , HOH B:307 , HOH B:335BINDING SITE FOR RESIDUE FMN B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4H2D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4H2D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4H2D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4H2D)

(-) Exons   (0, 0)

(no "Exon" information available for 4H2D)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains d4h2da_ A: automated matches                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...hhhhhhhhhhhhhhhhh..eeeeee....hhhhhhhh.eeeeeee.hhhhh.hhhhhhhhhhhh............eeeeeeee.......hhhhhhhhhhhhhh..ee....eeee......hhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h2d A   4 PQLLVLFGSQTGTAQDVSERLGREARRRRLGCRVQALDSYPVVNLINEPLVIFVCATTGQGDPPDNMKNFWRFIFRKNLPSTALCQMDFAVLGLGDSSYAKFNFVAKKLHRRLLQLGGSALLPVCLGDDQHELGPDAAVDPWLRDLWDRVLGLYPPPP 161
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153        

Chain B from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains d4h2db_ B: automated matches                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...hhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhh.eeeeeee.......hhhhhhhhhhhh............eeeeeeee.......hhhhhhhhhhhhhh..ee....eeee......hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4h2d B   4 PQLLVLFGSQTGTAQDVSERLGREARRRRLGCRVQALDSYPVVNLINEPLVIFVCATTGQGDPPDNMKNFWRFIFRKNLPSTALCQMDFAVLGLGDSSYAKFNFVAKKLHRRLLQLGGSALLPVCLGDDQHELGPDAAVDPWLRDLWDRVLGL 156
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153   

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4H2D)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (16, 16)

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(-) Related Entries Specified in the PDB File

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