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(-) Description

Title :  OYE1-W116L IN COMPLEX WITH AROMATIC PRODUCT OF R-CARVONE DISMUTATION
 
Authors :  Y. A. Pompeu, J. D. Stewart
Date :  04 Sep 12  (Deposition) - 03 Oct 12  (Release) - 09 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.36
Chains :  Asym./Biol. Unit :  A
Keywords :  Enoate Reductase, Oye, Carvone, Enanatiocomplementarity, Tim Barrel, Fmn Binding Domain, Nad(P)H Oxidoreductase, Fmn Nad(P)H, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. A. Pompeu, B. Sullivan, J. D. Stewart
X‑ Ray Crystallography Reveals How Subtle Changes Control The Orientation Of Substrate Binding In An Alkene Reductase
Acs Catalysis V. 3 2376 2013
PubMed: search  |  Reference-DOI: 10.1021/CS400622E

(-) Compounds

Molecule 1 - NADPH DEHYDROGENASE 1
    Chains: A
    EC Number: 1.6.99.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3) GOLD
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: OYE1
    Mutation: YES
    Organism Common: LAGER YEAST
    Organism Scientific: SACCHAROMYCES PASTORIANUS
    Organism Taxid: 27292
    Synonym: OLD YELLOW ENZYME 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 15)

Asymmetric/Biological Unit (6, 15)
No.NameCountTypeFull Name
10WV1Ligand/Ion2-METHYL-5-(PROP-1-EN-2-YL)PHENOL
21PE5Ligand/IonPENTAETHYLENE GLYCOL
3CL2Ligand/IonCHLORIDE ION
4FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
5MG2Ligand/IonMAGNESIUM ION
6NA4Ligand/IonSODIUM ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHOH A:837 , HOH A:840 , HOH A:841 , HOH A:852 , HOH A:1006 , HOH A:1033BINDING SITE FOR RESIDUE MG A 401
02AC2SOFTWAREASP A:83 , ASN A:126BINDING SITE FOR RESIDUE CL A 402
03AC3SOFTWAREASP A:51 , TRP A:52 , ASP A:358 , GLU A:389 , NA A:405 , HOH A:1018BINDING SITE FOR RESIDUE 1PE A 403
04AC4SOFTWAREGLN A:9 , ALA A:10 , 1PE A:406BINDING SITE FOR RESIDUE NA A 404
05AC5SOFTWARETRP A:52 , 1PE A:403BINDING SITE FOR RESIDUE NA A 405
06AC6SOFTWAREGLN A:9 , ALA A:10 , HIS A:43 , ASP A:83 , ASN A:84 , ARG A:334 , LYS A:362 , GLY A:363 , NA A:404 , HOH A:993BINDING SITE FOR RESIDUE 1PE A 406
07AC7SOFTWAREPRO A:34 , PRO A:35 , LEU A:36 , THR A:37 , GLY A:72 , GLN A:114 , HIS A:191 , ASN A:194 , ARG A:243 , PRO A:295 , GLY A:324 , ASN A:325 , GLY A:347 , ARG A:348 , PHE A:374 , TYR A:375 , 0WV A:414 , HOH A:503 , HOH A:504 , HOH A:506 , HOH A:515BINDING SITE FOR RESIDUE FMN A 407
08AC8SOFTWARELYS A:4BINDING SITE FOR RESIDUE CL A 408
09AC9SOFTWAREASP A:370 , HIS A:380 , ASP A:384 , NA A:412 , HOH A:779BINDING SITE FOR RESIDUE 1PE A 409
10BC1SOFTWAREGLU A:305 , GLY A:307 , SER A:308 , ASP A:310 , TYR A:313 , ARG A:322 , ASP A:339 , NA A:411BINDING SITE FOR RESIDUE 1PE A 410
11BC2SOFTWARE1PE A:410 , HOH A:990BINDING SITE FOR RESIDUE NA A 411
12BC3SOFTWARE1PE A:409BINDING SITE FOR RESIDUE NA A 412
13BC4SOFTWARETYR A:82 , TYR A:196 , PHE A:296 , TYR A:375 , HOH A:1120 , HOH A:1121 , HOH A:1122 , HOH A:1123BINDING SITE FOR RESIDUE 1PE A 413
14BC5SOFTWARETHR A:37 , HIS A:191 , ASN A:194 , TYR A:196 , PRO A:295 , PHE A:296 , TYR A:375 , FMN A:407BINDING SITE FOR RESIDUE 0WV A 414
15BC6SOFTWAREHOH A:853 , HOH A:862 , HOH A:867 , HOH A:869BINDING SITE FOR RESIDUE MG A 415

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GXM)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1His A:43 -Pro A:44

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GXM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GXM)

(-) Exons   (0, 0)

(no "Exon" information available for 4GXM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:399
                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains d4gxma_ A: Old yellow enzyme (OYE)                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhh.eee..eee...ee...................hhhhhhhhhh.....eee...ee.hhhhh.........hhhhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhh....ee.......hhhhhhhhhhh....ee.hhhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhh............hhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.....eeeee.....................hhhhhhh...eeee.....hhhhhhhhh....eeee.hhhhhhh.hhhhhhhhh......hhhhh............hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gxm A   1 SFVKDFKPQALGDTNLFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLLVLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMSAHGYIDYPTYEEALKLGWDKK 399
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GXM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GXM)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    His A:43 - Pro A:44   [ RasMol ]  
 

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  OYE1_SACPS | Q02899
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  1.6.99.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OYE1_SACPS | Q02899: 1bwk 1bwl 1k02 1k03 1oya 1oyb 1oyc 3rnd 3tx9 3txz 4gbu 4ge8 4gwe 4h4i 4h6k 4k7v 4k7y 4k8e 4k8h 4rnu 4rnv 4rnw 4rnx 4yil 4ync

(-) Related Entries Specified in the PDB File

3rnd 3tx9 4gbu 4ge8 4gwe 4h4i 4h6k 4k7v 4k7y 4k8e 4k8h