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(-) Description

Title :  OYE1 W116A COMPLEXED WITH (Z)-METHYL-3-CYANO-3-PHENYLACRYLATE IN A NON PRODUCTIVE BINDING MODE
 
Authors :  S. Santangelo, E. Brenna, J. D. Stewart, R. W. Powell Iii
Date :  09 Mar 15  (Deposition) - 20 Jan 16  (Release) - 20 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Oxidoreductase, Catalytic Activity, Fmn Binding, Old Yellow Enzyme (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Brenna, M. Crotti, F. G. Gatti, D. Monti, F. Parmeggiani, R. W. Powell Iii, S. Santangelo, J. D. Stewart
Opposite Enantioselectivity In The Bioreduction Of (Z)-Beta-Aryl-Beta-Cyanoacrylates Mediated By The Tryptopha 116 Mutants Of Old Yellow Enzyme 1: Synthetic Approach To (R)- And (S)-Beta-Aryl-Gamma-Lactams
Adv. Synth. Catal. V. 357 1849 2015
PubMed: search  |  Reference-DOI: 10.1002/ADSC.201500206

(-) Compounds

Molecule 1 - NADPH DEHYDROGENASE 1
    Chains: A
    EC Number: 1.6.99.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET3B
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: OYE1
    Mutation: YES
    Organism Common: LAGER YEAST
    Organism Scientific: SACCHAROMYCES PASTORIANUS
    Organism Taxid: 27292
    Synonym: OLD YELLOW ENZYME 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
14EG1Ligand/IonMETHYL (2Z)-3-CYANO-3-PHENYLPROP-2-ENOATE
2CL1Ligand/IonCHLORIDE ION
3FMN1Ligand/IonFLAVIN MONONUCLEOTIDE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:34 , PRO A:35 , LEU A:36 , THR A:37 , GLY A:72 , GLN A:114 , HIS A:191 , ASN A:194 , ARG A:243 , GLY A:324 , ASN A:325 , GLY A:347 , ARG A:348 , 4EG A:402 , HOH A:597 , HOH A:599 , HOH A:697 , HOH A:831binding site for residue FMN A 401
2AC2SOFTWARETHR A:37 , GLY A:72 , PHE A:74 , TYR A:82 , ALA A:116 , ASN A:194 , TYR A:196 , TYR A:375 , FMN A:401 , HOH A:562binding site for residue 4EG A 402
3AC3SOFTWAREHOH A:993binding site for residue CL A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YNC)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1His A:43 -Pro A:44

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YNC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YNC)

(-) Exons   (0, 0)

(no "Exon" information available for 4YNC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:397
                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhh.eee..eee...ee...................hhhhhhhhhh.....eee...ee.hhhhh.........hhhhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhh...eee.......hhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhh............hhhhhhhhhhhhhhhhhhhhh...eeeee.........hhhhh.hhhhhhhhhhhhhhhhhhh.....eeeee.....................hhhhhhh...eeee.....hhhhhhhhh....eeee.hhhhhhh.hhhhhhhhh......hhhhh............hhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ync A   1 SFVKDFKPQALGDTNLFKPIKIGNNELLHRAVIPPLTRMRALHPGNIPNRDWAVEYYTQRAQRPGTMIITEGAFISPQAGGYDNAPGVWSEEQMVEWTKIFNAIHEKKSFVWVQLAVLGWAAFPDNLARDGLRYDSASDNVFMDAEQEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEGGSNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKGLPLNKYDRDTFYQMSAHGYIDYPTYEEALKLGWD 397
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YNC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YNC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YNC)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    His A:43 - Pro A:44   [ RasMol ]  
 

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  OYE1_SACPS | Q02899
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OYE1_SACPS | Q02899: 1bwk 1bwl 1k02 1k03 1oya 1oyb 1oyc 3rnd 3tx9 3txz 4gbu 4ge8 4gwe 4gxm 4h4i 4h6k 4k7v 4k7y 4k8e 4k8h 4rnu 4rnv 4rnw 4rnx 4yil

(-) Related Entries Specified in the PDB File

4gbu 4GBU CONTAINS THE SAME PROTEIN COMPLEXED WITH (R) CARVONE