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Title :   CRYSTAL STRUCTURE OF AN ENOLASE FAMILY MEMBER FROM VIBRIO HARVEYI (EFI-TARGET 501692) WITH HOMOLOGY TO MANNONATE DEHYDRATASE, WITH MG, GLYCEROL AND DICARBOXYLATES BOUND (MIXED LOOPS, SPACE GROUP I4122)

Authors :   M. W. Vetting, R. Toro, R. Bhosle, N. F. Al Obaidi, L. L. Morisco, S. R. Wa S. Sojitra, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. B. Hillerich, J. Love, R. D. Seidel, H. J. Imker, J. A. Gerlt, S. C. Almo, Function Initiative (Efi)

Date :   08 Aug 12 (Deposition) - 29 Aug 12 (Release) - 29 Apr 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (4x)

Keywords :   Enolase, Putative Mannonate Dehydratase, Enzyme Function Initiative, Efi, Structural Genomics, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. W. Vetting, R. Toro, R. Bhosle, N. F. Al Obaidi, L. L. Morisco, S. R. Wasserman, S. Sojitra, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, B. Hillerich, J. Love, R. D. Seidel, H. J. Imker, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (Efi)
Crystal Structure Of An Enolase Family Member From Vibrio Harveyi (Efi-Target 501692) With Homology To Mannonate Dehydratase, With Mg, Glycerol And Dicarboxylates Bound (Mixed Loops, Space Group I4122)
To Be Published
PubMed: search

Molecule 1 - ENOLASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Gene	:	VME_00770
	Organism Scientific	:	VIBRIO HARVEYI
	Organism Taxid	:	673519
	Strain	:	1DA3

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (4x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 11)

No.	Name	Count	Type	Full Name
1	CL	4	Ligand/Ion	CHLORIDE ION
2	GOL	3	Ligand/Ion	GLYCEROL
3	MAE	1	Ligand/Ion	MALEIC ACID
4	MG	2	Ligand/Ion	MAGNESIUM ION
5	MLA	1	Ligand/Ion	MALONIC ACID

Biological Unit 1 (3, 20)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	12	Ligand/Ion	GLYCEROL
3	MAE	4	Ligand/Ion	MALEIC ACID
4	MG	-1	Ligand/Ion	MAGNESIUM ION
5	MLA	4	Ligand/Ion	MALONIC ACID

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:382 , PRO A:383 , HIS A:384 , GLU A:385 , HOH A:608 , HOH A:700	BINDING SITE FOR RESIDUE CL A 401
02	AC2	SOFTWARE	ARG A:193 , LYS A:198 , PHE A:200 , HIS A:201 , HOH A:883	BINDING SITE FOR RESIDUE GOL A 402
03	AC3	SOFTWARE	ARG A:18 , HIS A:19 , GLN A:41 , ARG A:382 , HIS A:384 , TRP A:386	BINDING SITE FOR RESIDUE MLA A 403
04	AC4	SOFTWARE	GLN A:41 , GLN A:42 , HIS A:207 , GLU A:257 , HIS A:307 , PRO A:309 , ASP A:311 , HOH A:876 , TYR B:79 , TRP B:80	BINDING SITE FOR RESIDUE GOL A 404
05	AC5	SOFTWARE	ASP A:205 , GLU A:231 , GLU A:257 , HOH A:501 , HOH A:502 , HOH A:894	BINDING SITE FOR RESIDUE MG A 405
06	AC6	SOFTWARE	THR A:166	BINDING SITE FOR RESIDUE CL A 406
07	AC7	SOFTWARE	ASN A:82 , GLY A:83 , PRO A:84 , VAL A:85 , ILE A:86 , ASN B:82 , GLY B:83 , PRO B:84 , VAL B:85 , ILE B:86	BINDING SITE FOR RESIDUE CL A 407
08	AC8	SOFTWARE	ARG B:382 , PRO B:383 , HIS B:384 , GLU B:385 , MAE B:404 , HOH B:603	BINDING SITE FOR RESIDUE CL B 401
09	AC9	SOFTWARE	TYR A:79 , TRP A:80 , GLN B:41 , GLN B:42 , HIS B:207 , GLU B:257 , HIS B:307 , PRO B:309 , ASP B:311 , HOH B:831	BINDING SITE FOR RESIDUE GOL B 402
10	BC1	SOFTWARE	ASP B:205 , GLU B:231 , GLU B:257 , HOH B:501 , HOH B:608 , HOH B:890	BINDING SITE FOR RESIDUE MG B 403
11	BC2	SOFTWARE	ARG B:18 , HIS B:19 , GLN B:41 , ARG B:382 , HIS B:384 , TRP B:386 , CL B:401 , HOH B:513	BINDING SITE FOR RESIDUE MAE B 404

(no "SS Bond" information available for 4GIS)

(no "Cis Peptide Bond" information available for 4GIS)

(no "SAP(SNP)/Variant" information available for 4GIS)

(no "PROSITE Motif" information available for 4GIS)

(no "Exon" information available for 4GIS)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:405
                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh...eeeeeeeee......eeeeeeee....eeeee.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh......eeeeeeeee.hhhhhhhhhhhhhhh...eeeeee...................ee.hhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhh.....eee.....hhhhhhhhhhh....ee..hhhhhhhhhhhhhhhhhhhhh..ee........hhhhhhhhhhhhhhh.....ee....hhhhhhhh.........ee............hhhhhhh.......hhhh.ee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gis A  -5 LYFQSMMNKNTISNIECVITKPDRHNLITVIVETESGVTGYGCATFQQRPLAVKTMVDEYLKPLLIGKDANNIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKIANMPLHQLFGGKSRDAIQVYTHATSDTMEGLYEQVDKYLEQGYQHIRCQLGFYGGVPENIQTAQNPTQGSYYDQDQYIENTVEMFKNLREKYGKQFHILHDVHERLFPNQAIQFAKQIEQYNPFFIEDILPPSQTEWLDNIRNQSSVSLALGELFNNPEEWKALIINRRVDFIRCHVSQIGGITPALKLGHFCESFGVRIAWHCPPDMTPIGAAVNTHLNVHLHNAAIQEHVEYKANTQRVFPNAAEPINGYLYASEIAGIGVEMDREAAQDFPVEYRPHEWTQSRLPDGSIHTP 399
                                     4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394

Chain B from PDB  Type:PROTEIN  Length:400
                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh..eeeeeeeee......eeeeeeee....eeeee.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh......eeeeeeeee.hhhhhhhhhhhhhhhh..eeeeee..............ee.hhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhhhh...eee.....hhhhhhhhhhh....ee..hhhhhhhhhhhhhhhhhhhhhh.ee........hhhhhhhhhhhhhhh.....ee....hhhhhhhh.........ee............hhhhhhh.......hhhh.ee......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gis B  -5 LYFQSMMNKNTISNIECVITKPDRHNLITVIVETESGVTGYGCATFQQRPLAVKTMVDEYLKPLLIGKDANNIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDIKAKIANMPLHQLFGGKSRDAIQVYTHATSDTMEGLYEQVDKYLEQGYQHIRCQLGFYNIQTAQNPTQGSYYDQDQYIENTVEMFKNLREKYGKQFHILHDVHERLFPNQAIQFAKQIEQYNPFFIEDILPPSQTEWLDNIRNQSSVSLALGELFNNPEEWKALIINRRVDFIRCHVSQIGGITPALKLGHFCESFGVRIAWHCPPDMTPIGAAVNTHLNVHLHNAAIQEHVEYKANTQRVFPNAAEPINGYLYASEIAGIGVEMDREAAQDFPVEYRPHEWTQSRLPDGSIHTP 399
                                     4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154  ||   169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399
                                                                                                                                                                                            157|                                                                                                                                                                                                                                            
                                                                                                                                                                                             163

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