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(-) Description

Title :  A SUBTYPE N10 NEURAMINIDASE-LIKE PROTEIN OF A/LITTLE YELLOW-SHOULDERED BAT/GUATEMALA/164/2009
 
Authors :  X. Zhu, I. A. Wilson
Date :  31 Jul 12  (Deposition) - 26 Sep 12  (Release) - 17 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E  (4x)
Biol. Unit 3:  F  (4x)
Keywords :  Influenza Virus, Neuraminidase-Like, N10, Beta-Propeller, Ectodomain, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Zhu, H. Yang, Z. Guo, W. Yu, P. J. Carney, Y. Li, L. M. Chen, J. C. Paulson, R. O. Donis, S. Tong, J. Stevens, I. A. Wilson
Crystal Structures Of Two Subtype N10 Neuraminidase-Like Proteins From Bat Influenza A Viruses Reveal A Diverged Putative Active Site.
Proc. Natl. Acad. Sci. Usa V. 109 18903 2012
PubMed-ID: 23012478  |  Reference-DOI: 10.1073/PNAS.1212579109

(-) Compounds

Molecule 1 - NEURAMINIDASE
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Plasmid: PFASTBACHT-A
    Expression System Strain: HI5
    Expression System Taxid: 7111
    Expression System Vector Type: PLASMID
    Gene: NA
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 1129346
    Strain: A/LITTLE YELLOW-SHOULDERED BAT/GUATEMALA/164/2009(H17N10))

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABCD  
Biological Unit 2 (4x):     E 
Biological Unit 3 (4x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 83)

Asymmetric Unit (8, 83)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2CA11Ligand/IonCALCIUM ION
3FUC7Ligand/IonALPHA-L-FUCOSE
4FUL6Ligand/IonBETA-L-FUCOSE
5GOL14Ligand/IonGLYCEROL
6MAN1Ligand/IonALPHA-D-MANNOSE
7NAG28Ligand/IonN-ACETYL-D-GLUCOSAMINE
8NO314Ligand/IonNITRATE ION
Biological Unit 1 (7, 45)
No.NameCountTypeFull Name
1BMA2Ligand/IonBETA-D-MANNOSE
2CA-1Ligand/IonCALCIUM ION
3FUC4Ligand/IonALPHA-L-FUCOSE
4FUL3Ligand/IonBETA-L-FUCOSE
5GOL7Ligand/IonGLYCEROL
6MAN1Ligand/IonALPHA-D-MANNOSE
7NAG17Ligand/IonN-ACETYL-D-GLUCOSAMINE
8NO311Ligand/IonNITRATE ION
Biological Unit 2 (4, 44)
No.NameCountTypeFull Name
1BMA-1Ligand/IonBETA-D-MANNOSE
2CA-1Ligand/IonCALCIUM ION
3FUC8Ligand/IonALPHA-L-FUCOSE
4FUL4Ligand/IonBETA-L-FUCOSE
5GOL12Ligand/IonGLYCEROL
6MAN-1Ligand/IonALPHA-D-MANNOSE
7NAG20Ligand/IonN-ACETYL-D-GLUCOSAMINE
8NO3-1Ligand/IonNITRATE ION
Biological Unit 3 (5, 64)
No.NameCountTypeFull Name
1BMA-1Ligand/IonBETA-D-MANNOSE
2CA-1Ligand/IonCALCIUM ION
3FUC4Ligand/IonALPHA-L-FUCOSE
4FUL8Ligand/IonBETA-L-FUCOSE
5GOL16Ligand/IonGLYCEROL
6MAN-1Ligand/IonALPHA-D-MANNOSE
7NAG24Ligand/IonN-ACETYL-D-GLUCOSAMINE
8NO312Ligand/IonNITRATE ION

(-) Sites  (83, 83)

Asymmetric Unit (83, 83)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:269 , NAG A:502 , FUC A:504 , FUL A:505 , HOH A:770BINDING SITE FOR RESIDUE NAG A 501
02AC2SOFTWARENAG A:501 , BMA A:503 , FUL A:505BINDING SITE FOR RESIDUE NAG A 502
03AC3SOFTWARENAG A:502BINDING SITE FOR RESIDUE BMA A 503
04AC4SOFTWAREASN A:269 , ILE A:314 , NAG A:501 , GOL A:512 , HOH A:716BINDING SITE FOR RESIDUE FUC A 504
05AC5SOFTWARENAG A:501 , NAG A:502 , HOH A:770BINDING SITE FOR RESIDUE FUL A 505
06AC6SOFTWAREGLN A:258 , ASN A:259 , ILE D:415ABINDING SITE FOR RESIDUE NAG A 506
07AC7SOFTWAREASN A:246 , ASN A:248BINDING SITE FOR RESIDUE NAG A 507
08AC8SOFTWAREASN A:146 , HOH A:844 , HOH A:845 , HOH A:846 , PRO D:108BINDING SITE FOR RESIDUE NAG A 508
09AC9SOFTWAREASN A:293 , ASP A:297 , ASP A:324 , GLY A:345 , GLY A:347 , HOH A:834BINDING SITE FOR RESIDUE CA A 509
10BC1SOFTWARECYS A:124 , ASP A:125 , THR A:127 , SER A:128 , PRO A:412 , LYS A:413 , GLY A:413A , ASP A:414 , ARG A:419 , GOL A:511 , GLU B:209BINDING SITE FOR RESIDUE GOL A 510
11BC2SOFTWARETHR A:100 , CYS A:129 , ILE A:163 , THR A:445 , CYS A:447 , GOL A:510 , NO3 A:513 , HOH A:653 , HOH A:841BINDING SITE FOR RESIDUE GOL A 511
12BC3SOFTWAREILE A:273 , PRO A:301 , GLU A:316 , MET A:340 , FUC A:504 , HOH A:660 , HOH A:697BINDING SITE FOR RESIDUE GOL A 512
13BC4SOFTWARETHR A:100 , ARG A:419 , CYS A:447 , GOL A:511 , LYS B:206 , GLU B:209 , GLU B:210 , VAL B:211BINDING SITE FOR RESIDUE NO3 A 513
14BC5SOFTWARETYR A:277 , GLN A:350 , ARG A:406 , HOH A:721BINDING SITE FOR RESIDUE NO3 A 514
15BC6SOFTWAREASN B:269 , THR B:271 , NAG B:502 , FUC B:505 , FUL B:506 , GLN C:454 , SER D:216BINDING SITE FOR RESIDUE NAG B 501
16BC7SOFTWARENAG B:501 , BMA B:503 , FUL B:506BINDING SITE FOR RESIDUE NAG B 502
17BC8SOFTWARENAG B:502 , MAN B:504BINDING SITE FOR RESIDUE BMA B 503
18BC9SOFTWAREBMA B:503 , VAL C:391BINDING SITE FOR RESIDUE MAN B 504
19CC1SOFTWAREASN B:269 , ILE B:314 , NAG B:501 , HOH B:670 , HOH B:778 , HOH B:807BINDING SITE FOR RESIDUE FUC B 505
20CC2SOFTWARENAG B:501 , NAG B:502 , GLN C:454BINDING SITE FOR RESIDUE FUL B 506
21CC3SOFTWAREGLN B:258 , ASN B:259 , HOH B:747BINDING SITE FOR RESIDUE NAG B 507
22CC4SOFTWAREASN B:248BINDING SITE FOR RESIDUE NAG B 508
23CC5SOFTWAREASN B:293 , ASP B:297 , ASP B:324 , GLY B:345 , GLY B:347 , HOH B:730BINDING SITE FOR RESIDUE CA B 509
24CC6SOFTWAREASP B:213 , HOH B:707 , HOH B:835 , HOH B:836 , HOH B:837 , HOH B:838BINDING SITE FOR RESIDUE CA B 510
25CC7SOFTWAREMET B:91 , CYS B:92 , GLU B:93 , VAL B:94 , PRO B:359 , TRP B:361 , GLN B:378BINDING SITE FOR RESIDUE GOL B 511
26CC8SOFTWAREPHE B:104 , PRO B:105 , TRP B:106 , ILE B:426 , ASP B:428 , GLU B:442 , NO3 B:514 , HOH B:727 , HOH B:783 , GLU C:152BINDING SITE FOR RESIDUE GOL B 512
27CC9SOFTWARETYR B:277 , ILE B:349 , GLN B:350 , ARG B:406 , HOH B:819BINDING SITE FOR RESIDUE NO3 B 513
28DC1SOFTWAREARG B:102 , PHE B:398 , LYS B:402 , ILE B:426 , SER B:444 , TRP B:458 , GOL B:512 , GLU C:152BINDING SITE FOR RESIDUE NO3 B 514
29DC2SOFTWARESER B:117 , ALA B:120 , LYS B:131 , GLU B:425 , GLN B:441 , GLU B:442 , LEU B:443 , HOH B:609BINDING SITE FOR RESIDUE NO3 B 515
30DC3SOFTWAREPHE B:215 , VAL B:262 , TRP B:265 , NO3 B:517 , HOH B:623 , HOH B:836 , ARG D:264BINDING SITE FOR RESIDUE NO3 B 516
31DC4SOFTWARETRP B:265 , NO3 B:516 , HOH B:833 , ARG D:264 , LYS D:266 , HOH D:748BINDING SITE FOR RESIDUE NO3 B 517
32DC5SOFTWAREASN C:269 , THR C:271 , NAG C:502 , FUC C:503 , FUL C:504BINDING SITE FOR RESIDUE NAG C 501
33DC6SOFTWARENAG C:501 , FUL C:504 , HOH C:726BINDING SITE FOR RESIDUE NAG C 502
34DC7SOFTWAREILE C:314 , NAG C:501 , HOH C:705BINDING SITE FOR RESIDUE FUC C 503
35DC8SOFTWARENAG C:501 , NAG C:502 , HOH C:734BINDING SITE FOR RESIDUE FUL C 504
36DC9SOFTWARETYR C:84 , GLN C:258 , ASN C:259BINDING SITE FOR RESIDUE NAG C 505
37EC1SOFTWAREPRO B:108 , ASN C:146BINDING SITE FOR RESIDUE NAG C 506
38EC2SOFTWAREASN C:293 , ASP C:297 , ASP C:324 , GLY C:345 , GLY C:347BINDING SITE FOR RESIDUE CA C 507
39EC3SOFTWAREHOH B:791 , ASP C:213 , HOH C:668 , HOH C:755 , HOH C:756 , HOH C:758BINDING SITE FOR RESIDUE CA C 508
40EC4SOFTWARECYS C:124 , ASP C:125 , PRO C:412 , LYS C:413 , GLY C:413A , ASP C:414 , ARG C:419 , GLU D:209BINDING SITE FOR RESIDUE GOL C 509
41EC5SOFTWARETYR C:277 , ILE C:349 , GLN C:350 , ARG C:406 , HOH C:701BINDING SITE FOR RESIDUE NO3 C 510
42EC6SOFTWAREPHE C:215 , VAL C:262 , TRP C:265 , HOH C:687 , HOH C:722 , HOH C:758 , ARG E:264BINDING SITE FOR RESIDUE NO3 C 511
43EC7SOFTWAREARG B:199 , ASN D:269 , THR D:271 , NAG D:502 , FUC D:503 , HOH D:811BINDING SITE FOR RESIDUE NAG D 501
44EC8SOFTWARENAG D:501BINDING SITE FOR RESIDUE NAG D 502
45EC9SOFTWAREASN D:269 , ILE D:314 , NAG D:501 , HOH D:666BINDING SITE FOR RESIDUE FUC D 503
46FC1SOFTWARELEU C:415 , TYR D:84 , GLY D:235 , GLN D:258 , ASN D:259 , HOH D:766BINDING SITE FOR RESIDUE NAG D 504
47FC2SOFTWAREPRO C:108 , ASN D:146BINDING SITE FOR RESIDUE NAG D 505
48FC3SOFTWAREASN D:293 , ASP D:297 , ASP D:324 , GLY D:345 , GLY D:347 , HOH D:782BINDING SITE FOR RESIDUE CA D 506
49FC4SOFTWAREHOH B:779 , GLN D:258 , HOH D:663 , HOH D:780 , HOH D:781 , HOH D:812BINDING SITE FOR RESIDUE CA D 507
50FC5SOFTWARESER A:148 , GLU A:152 , GLY D:103 , PHE D:104 , LYS D:402 , ILE D:426 , ASP D:428 , NO3 D:510 , HOH D:747BINDING SITE FOR RESIDUE GOL D 508
51FC6SOFTWARETYR D:277 , ILE D:349 , GLN D:350 , ARG D:406 , HOH D:649BINDING SITE FOR RESIDUE NO3 D 509
52FC7SOFTWAREGLU A:152 , ARG D:102 , PHE D:398 , LYS D:402 , ILE D:426 , SER D:444 , TRP D:458 , GOL D:508BINDING SITE FOR RESIDUE NO3 D 510
53FC8SOFTWAREASN E:269 , THR E:271 , NAG E:502 , FUC E:503 , FUL E:504BINDING SITE FOR RESIDUE NAG E 501
54FC9SOFTWARENAG E:501 , FUL E:504BINDING SITE FOR RESIDUE NAG E 502
55GC1SOFTWAREASN E:269 , ILE E:314 , NAG E:501 , HOH E:726 , HOH E:738 , HOH E:802BINDING SITE FOR RESIDUE FUC E 503
56GC2SOFTWARENAG E:501 , NAG E:502BINDING SITE FOR RESIDUE FUL E 504
57GC3SOFTWARETYR E:84 , GLY E:235 , GLN E:258 , ASN E:259 , GOL E:511BINDING SITE FOR RESIDUE NAG E 505
58GC4SOFTWARELYS D:339 , ASN E:246 , ASN E:248 , FUC E:507BINDING SITE FOR RESIDUE NAG E 506
59GC5SOFTWAREGLU E:346 , NAG E:506BINDING SITE FOR RESIDUE FUC E 507
60GC6SOFTWAREPRO E:108 , ASN E:146BINDING SITE FOR RESIDUE NAG E 508
61GC7SOFTWAREASN E:293 , ASP E:297 , ASP E:324 , GLY E:345 , GLY E:347 , HOH E:761BINDING SITE FOR RESIDUE CA E 509
62GC8SOFTWAREHOH C:776 , GLN E:258 , HOH E:601 , HOH E:619 , HOH E:629 , HOH E:785BINDING SITE FOR RESIDUE CA E 510
63GC9SOFTWAREASN E:259 , THR E:261 , GLN E:263 , NAG E:505BINDING SITE FOR RESIDUE GOL E 511
64HC1SOFTWARECYS E:124 , ASP E:125 , THR E:127 , CYS E:129 , GLU E:209 , PRO E:412 , LYS E:413 , GLY E:413A , ASP E:414BINDING SITE FOR RESIDUE GOL E 512
65HC2SOFTWARETYR C:312 , GLN C:313 , GLU E:93BINDING SITE FOR RESIDUE GOL E 513
66HC3SOFTWAREASN F:269 , THR F:271 , NAG F:502 , FUC F:503 , FUL F:504 , HOH F:796 , HOH F:821BINDING SITE FOR RESIDUE NAG F 501
67HC4SOFTWARENAG F:501 , FUL F:504BINDING SITE FOR RESIDUE NAG F 502
68HC5SOFTWAREASN F:269 , ILE F:314 , NAG F:501 , HOH F:732 , HOH F:742 , HOH F:865BINDING SITE FOR RESIDUE FUC F 503
69HC6SOFTWARENAG F:501 , NAG F:502 , HOH F:796BINDING SITE FOR RESIDUE FUL F 504
70HC7SOFTWARETYR F:84 , GLN F:258 , ASN F:259 , HOH F:792 , HOH F:860 , HOH F:905 , HOH F:907BINDING SITE FOR RESIDUE NAG F 505
71HC8SOFTWAREASN F:248 , HOH F:807BINDING SITE FOR RESIDUE NAG F 506
72HC9SOFTWAREPRO F:108 , ASN F:146 , NAG F:508 , FUL F:509 , HOH F:719BINDING SITE FOR RESIDUE NAG F 507
73IC1SOFTWARENAG F:507 , FUL F:509BINDING SITE FOR RESIDUE NAG F 508
74IC2SOFTWARENAG F:507 , NAG F:508BINDING SITE FOR RESIDUE FUL F 509
75IC3SOFTWAREASN F:293 , ASP F:297 , ASP F:324 , GLY F:345 , GLY F:347 , HOH F:768BINDING SITE FOR RESIDUE CA F 510
76IC4SOFTWAREHOH A:671 , ASP F:213 , THR F:214 , HOH F:729 , HOH F:908 , HOH F:909 , HOH F:915BINDING SITE FOR RESIDUE CA F 511
77IC5SOFTWAREVAL F:211 , ASP F:213 , THR F:214 , ILE F:449 , ASN F:450 , SER F:451 , HOH F:669BINDING SITE FOR RESIDUE GOL F 512
78IC6SOFTWARECYS F:124 , ASP F:125 , GLU F:209 , PRO F:412 , LYS F:413 , GLY F:413A , ASP F:414 , ARG F:419BINDING SITE FOR RESIDUE GOL F 513
79IC7SOFTWAREMET F:91 , CYS F:92 , GLU F:93 , VAL F:94 , PRO F:359 , TRP F:361 , HOH F:751 , HOH F:857BINDING SITE FOR RESIDUE GOL F 514
80IC8SOFTWAREARG A:304 , THR A:306 , TYR A:312 , GLN A:313 , GLU F:93 , LYS F:95 , HOH F:801BINDING SITE FOR RESIDUE GOL F 515
81IC9SOFTWARETYR F:312 , GLN F:313BINDING SITE FOR RESIDUE NO3 F 516
82JC1SOFTWAREGLU A:256 , ARG A:264 , GLU A:309 , HOH A:666 , HOH A:713 , HOH A:753 , VAL F:262 , GLN F:263BINDING SITE FOR RESIDUE NO3 F 517
83JC2SOFTWAREARG A:264 , PHE F:215 , TRP F:265 , HOH F:684 , HOH F:908 , HOH F:914BINDING SITE FOR RESIDUE NO3 F 518

(-) SS Bonds  (42, 42)

Asymmetric Unit
No.Residues
1A:92 -A:417
2A:124 -A:129
3A:183 -A:230
4A:232 -A:237
5A:280 -A:289
6A:318 -A:337
7A:421 -A:447
8B:92 -B:417
9B:124 -B:129
10B:183 -B:230
11B:232 -B:237
12B:280 -B:289
13B:318 -B:337
14B:421 -B:447
15C:92 -C:417
16C:124 -C:129
17C:183 -C:230
18C:232 -C:237
19C:280 -C:289
20C:318 -C:337
21C:421 -C:447
22D:92 -D:417
23D:124 -D:129
24D:183 -D:230
25D:232 -D:237
26D:280 -D:289
27D:318 -D:337
28D:421 -D:447
29E:92 -E:417
30E:124 -E:129
31E:183 -E:230
32E:232 -E:237
33E:280 -E:289
34E:318 -E:337
35E:421 -E:447
36F:92 -F:417
37F:124 -F:129
38F:183 -F:230
39F:232 -F:237
40F:280 -F:289
41F:318 -F:337
42F:421 -F:447

(-) Cis Peptide Bonds  (24, 24)

Asymmetric Unit
No.Residues
1Gly A:107 -Pro A:108
2Gly A:221 -Pro A:222
3Phe A:325 -Pro A:326
4Lys A:357 -Pro A:359
5Gly B:107 -Pro B:108
6Gly B:221 -Pro B:222
7Phe B:325 -Pro B:326
8Lys B:357 -Pro B:359
9Gly C:107 -Pro C:108
10Gly C:221 -Pro C:222
11Phe C:325 -Pro C:326
12Lys C:357 -Pro C:359
13Gly D:107 -Pro D:108
14Gly D:221 -Pro D:222
15Phe D:325 -Pro D:326
16Lys D:357 -Pro D:359
17Gly E:107 -Pro E:108
18Gly E:221 -Pro E:222
19Phe E:325 -Pro E:326
20Lys E:357 -Pro E:359
21Gly F:107 -Pro F:108
22Gly F:221 -Pro F:222
23Phe F:325 -Pro F:326
24Lys F:357 -Pro F:359

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GDI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GDI)

(-) Exons   (0, 0)

(no "Exon" information available for 4GDI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4gdia_ A: automated matches                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeee.............eeeeeeeeee....eeeeeeeeeeee..ee.........eeeeee..........eeeee..eeeeee....eeeeeee.hhhh.eeeeee..eeeeeee..............eee..eeeeeeee..hhhhheeeeeeee..eeeeeee........eeeeeeee..eeeeeee.........eeeee....eeee........................................eeeee.......eeeeeeee............eeeeeeeeeeeeeeee.............eeeeeeeee.....eeeeeeeeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4gdi A   83 FYWRAKSQMCEVKGWVPTHRGFPWGPELPGDLILSRRAYVSCDLTSCFKFFIAYGLSANQHLLNTSMEWEESLYKTPIGSASTLSTSEMILPGRSSSACFDGLKWTVLVANGRDRNSFIMIKYGEEVTDTFSASRGGPLRLPNSECICIEGSCFVIVSDGPNVNQSVHRIYELQNGTVQRWKQLNTTGINFEYSTCYTINNLIKCTGTNLWNDAKRPLLRFTKELNYQIVEPCNGAPTDFPRGGLTTPSCKMAQEKGEGGIQGFILDEKPAWTSKTKAESSQNGFVLEQIPNGIESEGTVSLSYELFSNKRTGRSGFFQPKGDLISGCQRICFWLEIEDQTVGLGMIQELSTFCGINSPVQNINWDS  460
                                    92       102       112       122       132       142       152|      165     | 174       184       194       204       214       224       234       244       254       264       274       284       294       304  ||   315       325    || 337|      348       359       369       379     ||391       402       412 |  || 419       429   ||  443       453       
                                                                                               152|           170A                                                                                                                                      307|                  330| 337|               357|                       385|||      399|         413A  ||               433|                      
                                                                                                156                                                                                                                                                      309                   333  339                359                        387||       401            415A|                438                      
                                                                                                                                                                                                                                                                                                                                   388|                       415B                                         
                                                                                                                                                                                                                                                                                                                                    390                                                                    


Chain B from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4gdib_ B: automated matches                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeee.............eeeeeeeeee....eeeeeeeeeeee..ee.........eeeeee..........eeeee..eeeeee....eeeeeee.hhhh.eeeeee..eeeeeee..............eee..eeeeeeee..hhhhheeeeeeee..eeeeeee........eeeeeeee..eeeeeee.........eeeee....eeee........................................eeeee.......eeeeeeee............eeeeeeeeeeeeeeee.............eeeeeeeee.....eeeeeeeeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4gdi B   83 FYWRAKSQMCEVKGWVPTHRGFPWGPELPGDLILSRRAYVSCDLTSCFKFFIAYGLSANQHLLNTSMEWEESLYKTPIGSASTLSTSEMILPGRSSSACFDGLKWTVLVANGRDRNSFIMIKYGEEVTDTFSASRGGPLRLPNSECICIEGSCFVIVSDGPNVNQSVHRIYELQNGTVQRWKQLNTTGINFEYSTCYTINNLIKCTGTNLWNDAKRPLLRFTKELNYQIVEPCNGAPTDFPRGGLTTPSCKMAQEKGEGGIQGFILDEKPAWTSKTKAESSQNGFVLEQIPNGIESEGTVSLSYELFSNKRTGRSGFFQPKGDLISGCQRICFWLEIEDQTVGLGMIQELSTFCGINSPVQNINWDS  460
                                    92       102       112       122       132       142       152|      165     | 174       184       194       204       214       224       234       244       254       264       274       284       294       304  ||   315       325    || 337|      348       359       369       379     ||391       402       412 |  || 419       429   ||  443       453       
                                                                                               152|           170A                                                                                                                                      307|                  330| 337|               357|                       385|||      399|         413A  ||               433|                      
                                                                                                156                                                                                                                                                      309                   333  339                359                        387||       401            415A|                438                      
                                                                                                                                                                                                                                                                                                                                   388|                       415B                                         
                                                                                                                                                                                                                                                                                                                                    390                                                                    


Chain C from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4gdic_ C: automated matches                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeee.............eeeeeeeeee....eeeeeeeeeeee..ee.........eeeeee..........eeeee..eeeeee....eeeeeee.hhhh.eeeeee..eeeeeee..............eee..eeeeeeee..hhhhheeeeeeee..eeeeeee........eeeeeeee..eeeeeee.........eeeee....eeee........................................eeeee.......eeeeeeee............eeeeeeeeeeeeeeee.............eeeeeeeee.....eeeeeeeeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4gdi C   83 FYWRAKSQMCEVKGWVPTHRGFPWGPELPGDLILSRRAYVSCDLTSCFKFFIAYGLSANQHLLNTSMEWEESLYKTPIGSASTLSTSEMILPGRSSSACFDGLKWTVLVANGRDRNSFIMIKYGEEVTDTFSASRGGPLRLPNSECICIEGSCFVIVSDGPNVNQSVHRIYELQNGTVQRWKQLNTTGINFEYSTCYTINNLIKCTGTNLWNDAKRPLLRFTKELNYQIVEPCNGAPTDFPRGGLTTPSCKMAQEKGEGGIQGFILDEKPAWTSKTKAESSQNGFVLEQIPNGIESEGTVSLSYELFSNKRTGRSGFFQPKGDLISGCQRICFWLEIEDQTVGLGMIQELSTFCGINSPVQNINWDS  460
                                    92       102       112       122       132       142       152|      165     | 174       184       194       204       214       224       234       244       254       264       274       284       294       304  ||   315       325    || 337|      348       359       369       379     ||391       402       412 |  || 419       429   ||  443       453       
                                                                                               152|           170A                                                                                                                                      307|                  330| 337|               357|                       385|||      399|         413A  ||               433|                      
                                                                                                156                                                                                                                                                      309                   333  339                359                        387||       401            415A|                438                      
                                                                                                                                                                                                                                                                                                                                   388|                       415B                                         
                                                                                                                                                                                                                                                                                                                                    390                                                                    


Chain D from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4gdid_ D: automated matches                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeee.............eeeeeeeeee....eeeeeeeeeeee..ee.........eeeeee..........eeeee..eeeeee....eeeeeee.hhhh.eeeeee..eeeeeee..............eee..eeeeeeee..hhhhheeeeeeee..eeeeeee........eeeeeeee..eeeeeee.........eeeee....eeee..................................ee....eeeee.......eeeeeeee............eeeeeeeeeeeeeeee.............eeeeeeeee.....eeeeeeeeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4gdi D   83 FYWRAKSQMCEVKGWVPTHRGFPWGPELPGDLILSRRAYVSCDLTSCFKFFIAYGLSANQHLLNTSMEWEESLYKTPIGSASTLSTSEMILPGRSSSACFDGLKWTVLVANGRDRNSFIMIKYGEEVTDTFSASRGGPLRLPNSECICIEGSCFVIVSDGPNVNQSVHRIYELQNGTVQRWKQLNTTGINFEYSTCYTINNLIKCTGTNLWNDAKRPLLRFTKELNYQIVEPCNGAPTDFPRGGLTTPSCKMAQEKGEGGIQGFILDEKPAWTSKTKAESSQNGFVLEQIPNGIESEGTVSLSYELFSNKRTGRSGFFQPKGDLISGCQRICFWLEIEDQTVGLGMIQELSTFCGINSPVQNINWDS  460
                                    92       102       112       122       132       142       152|      165     | 174       184       194       204       214       224       234       244       254       264       274       284       294       304  ||   315       325    || 337|      348       359       369       379     ||391       402       412 |  || 419       429   ||  443       453       
                                                                                               152|           170A                                                                                                                                      307|                  330| 337|               357|                       385|||      399|         413A  ||               433|                      
                                                                                                156                                                                                                                                                      309                   333  339                359                        387||       401            415A|                438                      
                                                                                                                                                                                                                                                                                                                                   388|                       415B                                         
                                                                                                                                                                                                                                                                                                                                    390                                                                    


Chain E from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4gdie_ E: automated matches                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeee.............eeeeeeeeee....eeeeeeeeeeee..ee.........eeeeee..........eeeee..eeeeee....eeeeeee.hhhh.eeeeee..eeeeeee..............eee..eeeeeeee..hhhhheeeeeeee..eeeeeee........eeeeeeee..eeeeeee.........eeeee....eeee........................................eeeee.......eeeeeeee............eeeeeeeeeeeeeeee.............eeeeeeeee.....eeeeeeeeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4gdi E   83 FYWRAKSQMCEVKGWVPTHRGFPWGPELPGDLILSRRAYVSCDLTSCFKFFIAYGLSANQHLLNTSMEWEESLYKTPIGSASTLSTSEMILPGRSSSACFDGLKWTVLVANGRDRNSFIMIKYGEEVTDTFSASRGGPLRLPNSECICIEGSCFVIVSDGPNVNQSVHRIYELQNGTVQRWKQLNTTGINFEYSTCYTINNLIKCTGTNLWNDAKRPLLRFTKELNYQIVEPCNGAPTDFPRGGLTTPSCKMAQEKGEGGIQGFILDEKPAWTSKTKAESSQNGFVLEQIPNGIESEGTVSLSYELFSNKRTGRSGFFQPKGDLISGCQRICFWLEIEDQTVGLGMIQELSTFCGINSPVQNINWDS  460
                                    92       102       112       122       132       142       152|      165     | 174       184       194       204       214       224       234       244       254       264       274       284       294       304  ||   315       325    || 337|      348       359       369       379     ||391       402       412 |  || 419       429   ||  443       453       
                                                                                               152|           170A                                                                                                                                      307|                  330| 337|               357|                       385|||      399|         413A  ||               433|                      
                                                                                                156                                                                                                                                                      309                   333  339                359                        387||       401            415A|                438                      
                                                                                                                                                                                                                                                                                                                                   388|                       415B                                         
                                                                                                                                                                                                                                                                                                                                    390                                                                    


Chain F from PDB  Type:PROTEIN  Length:367
                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4gdif_ F: automated matches                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeee.............eeeeeeeeee....eeeeeeeeeeee..ee.........eeeeee..........eeeee..eeeeee....eeeeeee.hhhh.eeeeee..eeeeeee..............eee..eeeeeeee..hhhhheeeeeeee..eeeeeee........eeeeeeee..eeeeeee.........eeeee....eeee........................................eeeee.......eeeeeeee............eeeeeeeeeeeeeeee.............eeeeeeeee.....eeeeeeeeeee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4gdi F   83 FYWRAKSQMCEVKGWVPTHRGFPWGPELPGDLILSRRAYVSCDLTSCFKFFIAYGLSANQHLLNTSMEWEESLYKTPIGSASTLSTSEMILPGRSSSACFDGLKWTVLVANGRDRNSFIMIKYGEEVTDTFSASRGGPLRLPNSECICIEGSCFVIVSDGPNVNQSVHRIYELQNGTVQRWKQLNTTGINFEYSTCYTINNLIKCTGTNLWNDAKRPLLRFTKELNYQIVEPCNGAPTDFPRGGLTTPSCKMAQEKGEGGIQGFILDEKPAWTSKTKAESSQNGFVLEQIPNGIESEGTVSLSYELFSNKRTGRSGFFQPKGDLISGCQRICFWLEIEDQTVGLGMIQELSTFCGINSPVQNINWDS  460
                                    92       102       112       122       132       142       152|      165     | 174       184       194       204       214       224       234       244       254       264       274       284       294       304  ||   315       325    || 337|      348       359       369       379     ||391       402       412 |  || 419       429   ||  443       453       
                                                                                               152|           170A                                                                                                                                      307|                  330| 337|               357|                       385|||      399|         413A  ||               433|                      
                                                                                                156                                                                                                                                                      309                   333  339                359                        387||       401            415A|                438                      
                                                                                                                                                                                                                                                                                                                                   388|                       415B                                         
                                                                                                                                                                                                                                                                                                                                    390
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GDI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GDI)

(-) Gene Ontology  (15, 15)

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        H6QM85_9INFA | H6QM85: 4gez

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4gdj