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4GDI
Biol. Unit 2
Info
Asym.Unit (1.1 MB)
Biol.Unit 1 (746 KB)
Biol.Unit 2 (748 KB)
Biol.Unit 3 (772 KB)
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(1)
Title
:
A SUBTYPE N10 NEURAMINIDASE-LIKE PROTEIN OF A/LITTLE YELLOW-SHOULDERED BAT/GUATEMALA/164/2009
Authors
:
X. Zhu, I. A. Wilson
Date
:
31 Jul 12 (Deposition) - 26 Sep 12 (Release) - 17 Dec 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E (4x)
Biol. Unit 3: F (4x)
Keywords
:
Influenza Virus, Neuraminidase-Like, N10, Beta-Propeller, Ectodomain, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Zhu, H. Yang, Z. Guo, W. Yu, P. J. Carney, Y. Li, L. M. Chen, J. C. Paulson, R. O. Donis, S. Tong, J. Stevens, I. A. Wilson
Crystal Structures Of Two Subtype N10 Neuraminidase-Like Proteins From Bat Influenza A Viruses Reveal A Diverged Putative Active Site.
Proc. Natl. Acad. Sci. Usa V. 109 18903 2012
[
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Hetero Components
(4, 44)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
3a: ALPHA-L-FUCOSE (FUCa)
3b: ALPHA-L-FUCOSE (FUCb)
3c: ALPHA-L-FUCOSE (FUCc)
3d: ALPHA-L-FUCOSE (FUCd)
3e: ALPHA-L-FUCOSE (FUCe)
3f: ALPHA-L-FUCOSE (FUCf)
3g: ALPHA-L-FUCOSE (FUCg)
4a: BETA-L-FUCOSE (FULa)
4b: BETA-L-FUCOSE (FULb)
4c: BETA-L-FUCOSE (FULc)
4d: BETA-L-FUCOSE (FULd)
4e: BETA-L-FUCOSE (FULe)
4f: BETA-L-FUCOSE (FULf)
5a: GLYCEROL (GOLa)
5b: GLYCEROL (GOLb)
5c: GLYCEROL (GOLc)
5d: GLYCEROL (GOLd)
5e: GLYCEROL (GOLe)
5f: GLYCEROL (GOLf)
5g: GLYCEROL (GOLg)
5h: GLYCEROL (GOLh)
5i: GLYCEROL (GOLi)
5j: GLYCEROL (GOLj)
5k: GLYCEROL (GOLk)
5l: GLYCEROL (GOLl)
5m: GLYCEROL (GOLm)
5n: GLYCEROL (GOLn)
6a: ALPHA-D-MANNOSE (MANa)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
7ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7f: N-ACETYL-D-GLUCOSAMINE (NAGf)
7g: N-ACETYL-D-GLUCOSAMINE (NAGg)
7h: N-ACETYL-D-GLUCOSAMINE (NAGh)
7i: N-ACETYL-D-GLUCOSAMINE (NAGi)
7j: N-ACETYL-D-GLUCOSAMINE (NAGj)
7k: N-ACETYL-D-GLUCOSAMINE (NAGk)
7l: N-ACETYL-D-GLUCOSAMINE (NAGl)
7m: N-ACETYL-D-GLUCOSAMINE (NAGm)
7n: N-ACETYL-D-GLUCOSAMINE (NAGn)
7o: N-ACETYL-D-GLUCOSAMINE (NAGo)
7p: N-ACETYL-D-GLUCOSAMINE (NAGp)
7q: N-ACETYL-D-GLUCOSAMINE (NAGq)
7r: N-ACETYL-D-GLUCOSAMINE (NAGr)
7s: N-ACETYL-D-GLUCOSAMINE (NAGs)
7t: N-ACETYL-D-GLUCOSAMINE (NAGt)
7u: N-ACETYL-D-GLUCOSAMINE (NAGu)
7v: N-ACETYL-D-GLUCOSAMINE (NAGv)
7w: N-ACETYL-D-GLUCOSAMINE (NAGw)
7x: N-ACETYL-D-GLUCOSAMINE (NAGx)
7y: N-ACETYL-D-GLUCOSAMINE (NAGy)
7z: N-ACETYL-D-GLUCOSAMINE (NAGz)
8a: NITRATE ION (NO3a)
8b: NITRATE ION (NO3b)
8c: NITRATE ION (NO3c)
8d: NITRATE ION (NO3d)
8e: NITRATE ION (NO3e)
8f: NITRATE ION (NO3f)
8g: NITRATE ION (NO3g)
8h: NITRATE ION (NO3h)
8i: NITRATE ION (NO3i)
8j: NITRATE ION (NO3j)
8k: NITRATE ION (NO3k)
8l: NITRATE ION (NO3l)
8m: NITRATE ION (NO3m)
8n: NITRATE ION (NO3n)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
-1
Ligand/Ion
BETA-D-MANNOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
FUC
8
Ligand/Ion
ALPHA-L-FUCOSE
4
FUL
4
Ligand/Ion
BETA-L-FUCOSE
5
GOL
12
Ligand/Ion
GLYCEROL
6
MAN
-1
Ligand/Ion
ALPHA-D-MANNOSE
7
NAG
20
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
8
NO3
-1
Ligand/Ion
NITRATE ION
[
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Sites
(14, 14)
Info
All Sites
01: EC6 (SOFTWARE)
02: FC8 (SOFTWARE)
03: FC9 (SOFTWARE)
04: GC1 (SOFTWARE)
05: GC2 (SOFTWARE)
06: GC3 (SOFTWARE)
07: GC4 (SOFTWARE)
08: GC5 (SOFTWARE)
09: GC6 (SOFTWARE)
10: GC7 (SOFTWARE)
11: GC8 (SOFTWARE)
12: GC9 (SOFTWARE)
13: HC1 (SOFTWARE)
14: HC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
EC6
SOFTWARE
PHE C:215 , VAL C:262 , TRP C:265 , HOH C:687 , HOH C:722 , HOH C:758 , ARG E:264
BINDING SITE FOR RESIDUE NO3 C 511
02
FC8
SOFTWARE
ASN E:269 , THR E:271 , NAG E:502 , FUC E:503 , FUL E:504
BINDING SITE FOR RESIDUE NAG E 501
03
FC9
SOFTWARE
NAG E:501 , FUL E:504
BINDING SITE FOR RESIDUE NAG E 502
04
GC1
SOFTWARE
ASN E:269 , ILE E:314 , NAG E:501 , HOH E:726 , HOH E:738 , HOH E:802
BINDING SITE FOR RESIDUE FUC E 503
05
GC2
SOFTWARE
NAG E:501 , NAG E:502
BINDING SITE FOR RESIDUE FUL E 504
06
GC3
SOFTWARE
TYR E:84 , GLY E:235 , GLN E:258 , ASN E:259 , GOL E:511
BINDING SITE FOR RESIDUE NAG E 505
07
GC4
SOFTWARE
LYS D:339 , ASN E:246 , ASN E:248 , FUC E:507
BINDING SITE FOR RESIDUE NAG E 506
08
GC5
SOFTWARE
GLU E:346 , NAG E:506
BINDING SITE FOR RESIDUE FUC E 507
09
GC6
SOFTWARE
PRO E:108 , ASN E:146
BINDING SITE FOR RESIDUE NAG E 508
10
GC7
SOFTWARE
ASN E:293 , ASP E:297 , ASP E:324 , GLY E:345 , GLY E:347 , HOH E:761
BINDING SITE FOR RESIDUE CA E 509
11
GC8
SOFTWARE
HOH C:776 , GLN E:258 , HOH E:601 , HOH E:619 , HOH E:629 , HOH E:785
BINDING SITE FOR RESIDUE CA E 510
12
GC9
SOFTWARE
ASN E:259 , THR E:261 , GLN E:263 , NAG E:505
BINDING SITE FOR RESIDUE GOL E 511
13
HC1
SOFTWARE
CYS E:124 , ASP E:125 , THR E:127 , CYS E:129 , GLU E:209 , PRO E:412 , LYS E:413 , GLY E:413A , ASP E:414
BINDING SITE FOR RESIDUE GOL E 512
14
HC2
SOFTWARE
TYR C:312 , GLN C:313 , GLU E:93
BINDING SITE FOR RESIDUE GOL E 513
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d4gdia_ (A:)
1b: SCOP_d4gdib_ (B:)
1c: SCOP_d4gdic_ (C:)
1d: SCOP_d4gdid_ (D:)
1e: SCOP_d4gdie_ (E:)
1f: SCOP_d4gdif_ (F:)
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Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
automated matches
(54)
Protein domain
:
automated matches
(54)
Influenza A virus [TaxId: 11320]
(31)
1a
d4gdia_
A:
1b
d4gdib_
B:
1c
d4gdic_
C:
1d
d4gdid_
D:
1e
d4gdie_
E:
1f
d4gdif_
F:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
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Asym.Unit (1.1 MB)
Header - Asym.Unit
Biol.Unit 1 (746 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
Biol.Unit 3 (772 KB)
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