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(-) Description

Title :  CRYSTAL STRUCTURE OF CYTOSOLIC IMP-GMP SPECIFIC 5'-NUCLEOTIDASE (LPG0095) IN COMPLEX WITH PHOSPHATE IONS FROM LEGIONELLA PNEUMOPHILA, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET LGR1
 
Authors :  F. Forouhar, M. Abashidze, J. Seetharaman, C. K. Ho, C. Ciccosanti, L. M R. Xiao, T. B. Acton, G. T. Montelione, L. Tong, Northeast Structural Consortium (Nesg)
Date :  18 Jul 12  (Deposition) - 10 Oct 12  (Release) - 02 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Structural Genomics, Psi-Biology, Northeast Structural Genomics Consortium, Nesg, Alpha-Beta Protein, Had-Like Superfamily, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Srinivasan, F. Forouhar, A. Shukla, C. Sampangi, S. Kulkarni, M. Abashidze, J. Seetharaman, S. Lew, L. Mao, T. B. Acton, R. Xiao, J. K. Everett, G. T. Montelione, L. Tong, H. Balaram
Allosteric Regulation And Substrate Activation In Cytosolic Nucleotidase Ii From Legionella Pneumophila.
Febs J. V. 281 1613 2014
PubMed-ID: 24456211  |  Reference-DOI: 10.1111/FEBS.12727

(-) Compounds

Molecule 1 - CYTOSOLIC IMP-GMP SPECIFIC 5'-NUCLEOTIDASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 469008
    Expression System Vector: PET21
    Gene: LPG0095
    Organism Scientific: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA
    Organism Taxid: 272624
    Strain: PHILADELPHIA 1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1PO42Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1PO48Ligand/IonPHOSPHATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:10 , LYS A:313 , ARG A:319 , THR A:320 , ALA A:427 , CYS A:428 , HOH A:624BINDING SITE FOR RESIDUE PO4 A 501
2AC2SOFTWARELYS A:182 , ARG A:187 , ARG A:336 , SER A:400 , PHE A:401 , HOH A:639BINDING SITE FOR RESIDUE PO4 A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G63)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Lys A:247 -Pro A:248

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G63)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G63)

(-) Exons   (0, 0)

(no "Exon" information available for 4G63)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:454
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains d4g63a_ A: Cytosolic IMP-GMP specific 5'-nucleotidase                                                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...ee.....eeee.......eehhhhhhhhhhhhhhhhhhhhh..hhhhhhh..hhhhh....eee....eeeee.....eeeeee..eeehhhhhhhhhh..........ee.....hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee.hhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhh....hhhhhh.eeee....hhhhhh...eeee......eee.......eeeee.hhhhhhhhh..hhh.eeeee.....hhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........ee..eehhhhhhhhhhh.eee.hhhhhhh.....ee............ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g63 A   5 KVFVNRIINMRKIKLIGLDMDHTLIRYNSKNFESLVYDLVKERLAESFHYPEEIKKFKFNFDDAIRGLVIDSKNGNILKLSRYGAIRLSYHGTKQISFSDQKKIYRSIYVDLGDPNYMAIDTSFSIAFCILYGQLVDLKDTNPDKMPSYQAIAQDVQYCVDKVHSDGTLKNIIIKNLKKYVIREKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYALSPFLDKGEHWQGLFEFVITLANKPRFFYDNLRFLSVNPENGTMTNVHGPIVPGVYQGGNAKKFTEDLGVGGDEILYIGDHIYGDILRLKKDCNWRTALVVEELGEEIASQIRALPIEKKIGEAMAIKKELEQKYVDLCTRSIDESSQQYDQEIHDLQLQISTVDLQISRLLQEQNSFYNPKWERVFRAGAEESYFAYQVDRFACIYMEKLSDLLEHSPMTYFRANRRLLAHDID 458
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G63)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G63)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/TrEMBL
        Q5ZZB6_LEGPH | Q5ZZB6: 2bde 4ohf

(-) Related Entries Specified in the PDB File

2bde 2BDE IS IN COMPLEX WITH SULPHATE ION.
lgr1