4G5Q - JenaLib

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Biological Unit 4 (Jmol Viewer)

Title :   STRUCTURE OF LGN GL4/GALPHAI1 COMPLEX

Authors :   M. Jia, J. Li, J. Zhu, W. Wen, M. Zhang, W. Wang

Date :   18 Jul 12 (Deposition) - 05 Sep 12 (Release) - 05 Sep 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.90

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,E  (1x)
Biol. Unit 2: B,F  (1x)
Biol. Unit 3: C,G  (1x)
Biol. Unit 4: D,H  (1x)

Keywords :   Galphai, Goloco, Galpha Signaling, Asymmetric Cell Division, Cell Cycle-Signaling Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Jia, J. Li, J. Zhu, W. Wen, M. Zhang, W. Wang
Crystal Structures Of The Scaffolding Protein Lgn Reveal Th General Mechanism By Which Goloco Binding Motifs Inhibit Th Release Of Gdp From Galphai Subunits In G-Coupled Heterotrimeric Proteins
To Be Published
PubMed: search

Molecule 1 - GUANINE NUCLEOTIDE-BINDING PROTEIN G(I) SUBUNIT ALPHA-1
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	UNP RESIDUES 25-354
	Gene	:	GNAI1, GNAI3
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	ADENYLATE CYCLASE-INHIBITING G ALPHA PROTEIN

Molecule 2 - G-PROTEIN-SIGNALING MODULATOR 2
	Chains	:	E, F, G, H
	Engineered	:	YES
	Fragment	:	GOLOCO 4 (UNP RESIDUES 628-652)
	Organism Common	:	MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Other Details	:	THIS SEQUENCE OCCURS NATURALLY IN MOUSE.
	Synonym	:	LGN, PINS HOMOLOG
	Synthetic	:	YES

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A				E
Biological Unit 2 (1x)	:		B				F
Biological Unit 3 (1x)	:			C				G
Biological Unit 4 (1x)	:				D				H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 25)

No.	Name	Count	Type	Full Name
1	CIT	4	Ligand/Ion	CITRIC ACID
2	GDP	4	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	SO4	17	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 5)

No.	Name	Count	Type	Full Name
1	CIT	-1	Ligand/Ion	CITRIC ACID
2	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 7)

No.	Name	Count	Type	Full Name
1	CIT	2	Ligand/Ion	CITRIC ACID
2	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 3 (3, 6)

No.	Name	Count	Type	Full Name
1	CIT	1	Ligand/Ion	CITRIC ACID
2	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 4 (3, 7)

No.	Name	Count	Type	Full Name
1	CIT	1	Ligand/Ion	CITRIC ACID
2	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
3	SO4	5	Ligand/Ion	SULFATE ION

Asymmetric Unit (25, 25)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:42 , GLU A:43 , SER A:44 , GLY A:45 , LYS A:46 , SER A:47 , THR A:48 , ASP A:150 , SER A:151 , ARG A:176 , ARG A:178 , ASN A:269 , LYS A:270 , ASP A:272 , LEU A:273 , CYS A:325 , ALA A:326 , THR A:327 , ARG E:635 , ARG E:640	BINDING SITE FOR RESIDUE GDP A 401
02	AC2	SOFTWARE	LYS A:35 , LYS A:197 , HIS A:213	BINDING SITE FOR RESIDUE SO4 A 402
03	AC3	SOFTWARE	THR A:170 , GLN A:171	BINDING SITE FOR RESIDUE SO4 A 403
04	AC4	SOFTWARE	SER A:263 , TYR A:320 , ASN A:346	BINDING SITE FOR RESIDUE SO4 A 404
05	AC5	SOFTWARE	SER A:293 , ASN A:294	BINDING SITE FOR RESIDUE SO4 A 405
06	AC6	SOFTWARE	GLY B:42 , GLU B:43 , SER B:44 , GLY B:45 , LYS B:46 , SER B:47 , THR B:48 , ASP B:150 , SER B:151 , ARG B:176 , ARG B:178 , ASN B:269 , LYS B:270 , ASP B:272 , LEU B:273 , CYS B:325 , ALA B:326 , THR B:327 , ARG F:635 , ARG F:640	BINDING SITE FOR RESIDUE GDP B 401
07	AC7	SOFTWARE	LYS A:271 , HIS A:322 , PHE A:323 , ASN A:331 , PHE A:334 , GLU B:275 , LYS B:279 , THR B:295 , TYR B:296 , GLU B:297	BINDING SITE FOR RESIDUE CIT B 402
08	AC8	SOFTWARE	GLU A:275 , THR A:295 , TYR A:296 , GLU A:297 , HOH A:502 , LYS B:271 , HIS B:322 , PHE B:323 , ASN B:331 , VAL B:335	BINDING SITE FOR RESIDUE CIT B 403
09	AC9	SOFTWARE	LYS B:35 , LYS B:197 , PHE B:199 , HIS B:213	BINDING SITE FOR RESIDUE SO4 B 404
10	BC1	SOFTWARE	THR B:170 , GLN B:171	BINDING SITE FOR RESIDUE SO4 B 405
11	BC2	SOFTWARE	SER B:263 , TYR B:320 , ASN B:346	BINDING SITE FOR RESIDUE SO4 B 406
12	BC3	SOFTWARE	LYS B:128 , LYS B:132	BINDING SITE FOR RESIDUE SO4 B 407
13	BC4	SOFTWARE	ALA C:41 , GLY C:42 , GLU C:43 , SER C:44 , GLY C:45 , LYS C:46 , SER C:47 , THR C:48 , ASP C:150 , SER C:151 , ARG C:176 , ARG C:178 , ASN C:269 , LYS C:270 , ASP C:272 , LEU C:273 , CYS C:325 , ALA C:326 , THR C:327 , ARG G:635 , ARG G:640	BINDING SITE FOR RESIDUE GDP C 401
14	BC5	SOFTWARE	GLU C:275 , LYS C:279 , THR C:295 , TYR C:296 , GLU C:297 , LYS D:271 , HIS D:322 , PHE D:323 , ASN D:331 , PHE D:334 , VAL D:335	BINDING SITE FOR RESIDUE CIT C 402
15	BC6	SOFTWARE	GLU C:33 , LYS C:35 , LYS C:197 , PHE C:199 , HIS C:213	BINDING SITE FOR RESIDUE SO4 C 403
16	BC7	SOFTWARE	THR C:170 , GLN C:171	BINDING SITE FOR RESIDUE SO4 C 404
17	BC8	SOFTWARE	PHE C:191 , LYS C:192	BINDING SITE FOR RESIDUE SO4 C 405
18	BC9	SOFTWARE	SER C:293 , ASN C:294	BINDING SITE FOR RESIDUE SO4 C 406
19	CC1	SOFTWARE	GLU D:43 , SER D:44 , GLY D:45 , LYS D:46 , SER D:47 , THR D:48 , ASP D:150 , SER D:151 , ARG D:176 , ARG D:178 , ASN D:269 , LYS D:270 , ASP D:272 , LEU D:273 , CYS D:325 , ALA D:326 , THR D:327 , HOH D:506 , ARG H:635 , ARG H:640	BINDING SITE FOR RESIDUE GDP D 401
20	CC2	SOFTWARE	LYS C:271 , HIS C:322 , PHE C:323 , ASN C:331 , VAL C:335 , GLU D:275 , THR D:295 , TYR D:296 , GLU D:297	BINDING SITE FOR RESIDUE CIT D 402
21	CC3	SOFTWARE	ASP D:158 , ARG D:161 , ASN D:166	BINDING SITE FOR RESIDUE SO4 D 403
22	CC4	SOFTWARE	LYS D:35 , LYS D:197 , PHE D:199 , HIS D:213	BINDING SITE FOR RESIDUE SO4 D 404
23	CC5	SOFTWARE	LYS D:128	BINDING SITE FOR RESIDUE SO4 D 405
24	CC6	SOFTWARE	PHE D:191 , LYS D:192	BINDING SITE FOR RESIDUE SO4 D 406
25	CC7	SOFTWARE	ASN D:255 , LYS D:312	BINDING SITE FOR RESIDUE SO4 D 407

(no "SS Bond" information available for 4G5Q)

Asymmetric Unit

No.	Residues
1	Lys D:314	-	Asp D:315

(no "SAP(SNP)/Variant" information available for 4G5Q)

(no "PROSITE Motif" information available for 4G5Q)

(no "Exon" information available for 4G5Q)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:320
                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh......hhhhhhhh.......eeeeee....eeeeee......hhhhhhhhh....eeeeeee.hhhhh........hhhhhhhhhhhhhhh.......eeeeeeehhhhhhhhhh..hhhhh........hhhhhhhhhhhhhhh.........eeeee....hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g5q A  31 AREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKD 350
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350

Chain B from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.....hhhhhhhh.......eeeeee....eeeeee.....hhhhhhh.....eeeeeee.hhhhh........hhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhh.........eeeee....hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g5q B  32 REVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 349
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201 ||    213       223       233       243       253       263       273       283       293       303       313       323       333       343      
                                                                                                                                                                                                     203|                                                                                                                                               
                                                                                                                                                                                                      206

Chain C from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh......hhhhhhh........eeeeeee..eeeeeee.....hhhhhhhh.....eeeeeee.hhhhh.......hhhhhhhhhhhhhhh.......eeeeeeehhhhhhhhh...hhhhh........hhhhhhhhhhhhhhh.........eeeee....hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g5q C  31 AREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSARADDARQLFVLAFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLADEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 354
                                    40        50        60        70        80        90       100       110||     126       136       146       156       166       176       186       196     ||207       217       227       238       248       258       268       278       288       298       308       318       328       338       348      
                                                                                                          111|                                                                                 202|                            235|                                                                                                                     
                                                                                                           118                                                                                  204                             237

Chain D from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee.....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh......hhhhhhhh.......eeeeeee..eeeeeee......hhhhhhhh.....eeeeeee.hhhhh........hhhhhhhhhhhhhhh.......eeeeeeehhhhhhhhh...hhhhh........hhhhhhhhhhhhhhh.........eeeee....hhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4g5q D  31 AREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDSARADDARQLFVLAGAAEEGFMTAELAGVIKRLWKDSGVQACFNRSREYQLNDSAAYYLNDLDRIAQPNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 354
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350

Chain E from PDB  Type:PROTEIN  Length:21
                                                     
               SCOP domains --------------------- SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh.hhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                 4g5q E 623 DFFSLILRSQAKRMDEQRVLL 643
                                   632       642

Chain F from PDB  Type:PROTEIN  Length:22
                                                      
               SCOP domains ---------------------- SCOP domains
               CATH domains ---------------------- CATH domains
               Pfam domains ---------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh.hhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------- SAPs(SNPs)
                    PROSITE ---------------------- PROSITE
                 Transcript ---------------------- Transcript
                 4g5q F 622 EDFFSLILRSQAKRMDEQRVLL 643
                                   631       641

Chain G from PDB  Type:PROTEIN  Length:24
                                                        
               SCOP domains ------------------------ SCOP domains
               CATH domains ------------------------ CATH domains
               Pfam domains ------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhh.hhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------ SAPs(SNPs)
                    PROSITE ------------------------ PROSITE
                 Transcript ------------------------ Transcript
                 4g5q G 622 EDFFSLILRSQAKRMDEQRVLLQR 645
                                   631       641

Chain H from PDB  Type:PROTEIN  Length:22
                                                      
               SCOP domains ---------------------- SCOP domains
               CATH domains ---------------------- CATH domains
               Pfam domains ---------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh.hhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------- SAPs(SNPs)
                    PROSITE ---------------------- PROSITE
                 Transcript ---------------------- Transcript
                 4g5q H 622 EDFFSLILRSQAKRMDEQRVLL 643
                                   631       641

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4G5Q)

(no "CATH Domain" information available for 4G5Q)

(no "Pfam Domain" information available for 4G5Q)

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	Cis Peptide Bonds
		Lys D:314 - Asp D:315	[ RasMol ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 25)

Sites (25, 25)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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Gene Ontology (51, 55)

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