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(-) Description

Title :  STRUCTURE COMPLEX OF LGN BINDING WITH FRMPD1
 
Authors :  Y. Shang, Z. Pan, W. Wen, W. Wang, M. Zhang
Date :  13 Jul 12  (Deposition) - 23 Jan 13  (Release) - 17 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Tpr Repeat, Lgn, Cell Polarity, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Pan, Y. Shang, M. Jia, L. Zhang, C. Xia, M. Zhang, W. Wang, W. Wen
Structural And Biochemical Characterization Of The Interaction Between Lgn And Frmpd1
J. Mol. Biol. V. 425 1039 2013
PubMed-ID: 23318951  |  Reference-DOI: 10.1016/J.JMB.2013.01.003

(-) Compounds

Molecule 1 - G-PROTEIN-SIGNALING MODULATOR 2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: TPR DOMAIN, UNP RESIDUES 22-357
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: PINS HOMOLOG
 
Molecule 2 - PEPTIDE FROM FERM AND PDZ DOMAIN-CONTAINING PROTEIN 1
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 901-938
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FERM DOMAIN-CONTAINING PROTEIN 2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric/Biological Unit (3, 10)
No.NameCountTypeFull Name
1BTB1Ligand/Ion2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2CL1Ligand/IonCHLORIDE ION
3GOL8Ligand/IonGLYCEROL

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN A:119 , LEU A:122 , ARG A:126 , GLU A:180BINDING SITE FOR RESIDUE GOL A 401
02AC2SOFTWARELEU A:92 , ASP A:130 , VAL A:132 , GLY A:133 , ARG A:136 , GLU B:13 , GOL B:101BINDING SITE FOR RESIDUE GOL A 402
03AC3SOFTWAREVAL A:132 , ALA A:135 , ARG A:136 , ASN A:181 , VAL A:185 , ASP A:190 , ALA A:193 , ARG A:196 , GOL A:404 , HOH A:514 , HOH A:515 , HOH A:525BINDING SITE FOR RESIDUE GOL A 403
04AC4SOFTWAREASP A:190 , ALA A:192 , ALA A:193 , ARG A:196 , GOL A:403BINDING SITE FOR RESIDUE GOL A 404
05AC5SOFTWARELYS A:106 , ASN A:143 , LYS A:150 , GLU B:8BINDING SITE FOR RESIDUE GOL A 405
06AC6SOFTWAREARG A:221 , PHE A:228 , ASP A:230 , HOH A:524BINDING SITE FOR RESIDUE GOL A 406
07AC7SOFTWARELYS A:73 , GLU A:76 , TYR A:77 , GLU A:219 , GLN A:220 , HOH A:542BINDING SITE FOR RESIDUE GOL A 407
08AC8SOFTWARELEU A:75 , GLU A:76 , HIS A:79 , GLU A:179 , PHE A:198 , LEU A:201 , ILE A:216 , HOH A:502 , HOH A:534 , HOH A:572BINDING SITE FOR RESIDUE BTB A 408
09AC9SOFTWAREARG A:120 , HOH A:551BINDING SITE FOR RESIDUE CL A 409
10BC1SOFTWARELYS A:96 , VAL A:132 , GOL A:402 , GLU B:13 , THR B:14BINDING SITE FOR RESIDUE GOL B 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4G2V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4G2V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4G2V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4G2V)

(-) Exons   (0, 0)

(no "Exon" information available for 4G2V)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:321
                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4g2v A  13 GSASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 344
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152|      173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343 
                                                                                                                                                                     152|                                                                                                                                                                                    
                                                                                                                                                                      164                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:17
                                                 
               SCOP domains ----------------- SCOP domains
               CATH domains ----------------- CATH domains
               Pfam domains ----------------- Pfam domains
         Sec.struct. author ................. Sec.struct. author
                 SAPs(SNPs) ----------------- SAPs(SNPs)
                    PROSITE ----------------- PROSITE
                 Transcript ----------------- Transcript
                 4g2v B   4 VMEMEPETMETKSVIDS  20
                                    13
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4G2V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4G2V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4G2V)

(-) Gene Ontology  (21, 24)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FRPD1_HUMAN | Q5SYB0: 2edv
        GPSM2_MOUSE | Q8VDU0: 3ro2 3ro3 4g5o 4g5q 4g5r 4g5s 4jhr

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4G2V)