4FJ2 - JenaLib

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Biological Unit 1 (Jmol Viewer)

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Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE TERNARY COMPLEX BETWEEN A FUNGAL 17BETA-HYDROXYSTEROID DEHYDROGENASE (HOLO FORM) AND BIOCHANIN A

Authors :   A. Cassetta, D. Lamba, I. Krastanova

Date :   11 Jun 12 (Deposition) - 03 Jul 13 (Release) - 29 Oct 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: A,B,C,D  (1x)

Keywords :   Short Chain Dehydrogenase/Reductase, Rossmann Fold, Oxidoreductase, Nadp(H), Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Cassetta, D. Lamba, I. Krastanova, K. Kristan, M. Brunskole-Svegelj, J. Stojan, T. Lanisnik-Rizner
Crystallographic Studies On The Flavonoid Inhibition Of A Fungal 17Beta-Hydroxysteroid Dehydrogenase
To Be Published
PubMed: search

Molecule 1 - 17BETA-HYDROXYSTEROID DEHYDROGENASE
	Chains	:	A, B, C, D
	EC Number	:	1.1.1.62
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGEX
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Gene	:	17HSDCL
	Organism Common	:	FILAMENTOUS FUNGUS
	Organism Scientific	:	COCHLIOBOLUS LUNATUS
	Organism Taxid	:	5503
	Strain	:	M118

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 11)

No.	Name	Count	Type	Full Name
1	EDO	5	Ligand/Ion	1,2-ETHANEDIOL
2	NAP	4	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3	QSO	2	Ligand/Ion	5,7-DIHYDROXY-3-(4-METHOXYPHENYL)-4H-CHROMEN-4-ONE

Biological Unit 1 (3, 5)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
2	NAP	2	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3	QSO	1	Ligand/Ion	5,7-DIHYDROXY-3-(4-METHOXYPHENYL)-4H-CHROMEN-4-ONE

Biological Unit 2 (3, 6)

No.	Name	Count	Type	Full Name
1	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
2	NAP	2	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3	QSO	1	Ligand/Ion	5,7-DIHYDROXY-3-(4-METHOXYPHENYL)-4H-CHROMEN-4-ONE

Biological Unit 3 (3, 11)

No.	Name	Count	Type	Full Name
1	EDO	5	Ligand/Ion	1,2-ETHANEDIOL
2	NAP	4	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
3	QSO	2	Ligand/Ion	5,7-DIHYDROXY-3-(4-METHOXYPHENYL)-4H-CHROMEN-4-ONE

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:25 , ARG A:28 , GLY A:29 , ILE A:30 , ALA A:50 , ASN A:51 , SER A:52 , ASP A:76 , ILE A:77 , ARG A:78 , ASN A:103 , SER A:104 , GLY A:105 , LEU A:126 , THR A:151 , SER A:152 , TYR A:167 , LYS A:171 , PRO A:197 , GLY A:198 , THR A:200 , THR A:202 , ASP A:203 , MET A:204 , HOH A:403	BINDING SITE FOR RESIDUE NAP A 301
02	AC2	SOFTWARE	ASN A:154 , PHE A:159 , GLY A:199 , TYR A:212	BINDING SITE FOR RESIDUE EDO A 302
03	AC3	SOFTWARE	GLY B:25 , ARG B:28 , GLY B:29 , ILE B:30 , TYR B:49 , ALA B:50 , ASN B:51 , SER B:52 , ASP B:76 , ILE B:77 , ARG B:78 , ASN B:103 , SER B:104 , GLY B:105 , LEU B:126 , THR B:151 , SER B:152 , TYR B:167 , LYS B:171 , PRO B:197 , GLY B:198 , GLY B:199 , THR B:200 , THR B:202 , MET B:204 , QSO B:302 , HOH B:401 , HOH B:422	BINDING SITE FOR RESIDUE NAP B 301
04	AC4	SOFTWARE	VAL B:107 , ASN B:154 , TYR B:167 , GLY B:198 , GLY B:199 , MET B:204 , PHE B:205 , VAL B:208 , SER B:209 , TYR B:212 , ILE B:213 , MET B:227 , ALA B:228 , NAP B:301 , HOH B:435	BINDING SITE FOR RESIDUE QSO B 302
05	AC5	SOFTWARE	LYS B:19 , GLY B:145 , VAL B:251	BINDING SITE FOR RESIDUE EDO B 303
06	AC6	SOFTWARE	GLY C:25 , ARG C:28 , GLY C:29 , ILE C:30 , TYR C:49 , ALA C:50 , ASN C:51 , SER C:52 , ALA C:75 , ASP C:76 , ILE C:77 , ARG C:78 , ASN C:103 , SER C:104 , GLY C:105 , LEU C:126 , THR C:151 , SER C:152 , TYR C:167 , LYS C:171 , PRO C:197 , GLY C:198 , GLY C:199 , THR C:200 , THR C:202 , MET C:204 , HOH C:401 , HOH C:418 , HOH C:424 , HOH C:426	BINDING SITE FOR RESIDUE NAP C 301
07	AC7	SOFTWARE	ASN C:154 , PHE C:159 , GLY C:199 , HOH C:440	BINDING SITE FOR RESIDUE EDO C 302
08	AC8	SOFTWARE	PHE C:124 , ARG C:129 , HOH C:453 , PHE D:124	BINDING SITE FOR RESIDUE EDO C 303
09	AC9	SOFTWARE	GLY D:25 , ARG D:28 , GLY D:29 , ILE D:30 , ALA D:50 , ASN D:51 , SER D:52 , ASP D:76 , ILE D:77 , ARG D:78 , ASN D:103 , SER D:104 , GLY D:105 , LEU D:126 , THR D:151 , TYR D:167 , LYS D:171 , PRO D:197 , GLY D:198 , GLY D:199 , THR D:200 , THR D:202 , MET D:204 , QSO D:302 , HOH D:401 , HOH D:411 , HOH D:413	BINDING SITE FOR RESIDUE NAP D 301
10	BC1	SOFTWARE	VAL D:106 , VAL D:107 , ASN D:154 , TYR D:167 , GLY D:198 , GLY D:199 , PHE D:205 , VAL D:208 , SER D:209 , TYR D:212 , ALA D:228 , NAP D:301 , HOH D:430 , HOH D:434	BINDING SITE FOR RESIDUE QSO D 302
11	BC2	SOFTWARE	HIS D:211 , TYR D:212 , PRO D:214 , HOH D:460	BINDING SITE FOR RESIDUE EDO D 303

(no "SS Bond" information available for 4FJ2)

(no "Cis Peptide Bond" information available for 4FJ2)

(no "SAP(SNP)/Variant" information available for 4FJ2)

(no "PROSITE Motif" information available for 4FJ2)

(no "Exon" information available for 4FJ2)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains d4fj2a_ A: automated matches                                                                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee............hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee....hhhhhhhhhhhh.hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh.....eeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fj2 A  11 YIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASPLHRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDGGAA 270
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270

Chain B from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains d4fj2b_ B: automated matches                                                                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee............hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee....hhhhhhhh.....hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh.....eeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fj2 B  11 YIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASPLHRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDGGAA 270
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270

Chain C from PDB  Type:PROTEIN  Length:258
                                                                                                                                                                                                                                                                                                  
               SCOP domains d4fj2c_ C: automated matches                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee............hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee....hhhhhhhhhhhh.hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh.....eeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4fj2 C  13 PGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASPLHRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDGGAA 270
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262

Chain D from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains d4fj2d_ D: automated matches                                                                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee............hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee....hhhhhhhhhhhh.hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh.....eeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fj2 D  10 TYIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASPLHRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDGGAA 270
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: automated matches (447)

Protein domain: automated matches (447)

Cochliobolus lunatus [TaxId: 5503] (9)

1a	d4fj2a_	A:
1b	d4fj2b_	B:
1c	d4fj2c_	C:
1d	d4fj2d_	D:

(no "CATH Domain" information available for 4FJ2)

(no "Pfam Domain" information available for 4FJ2)

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	4fj2
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	1.1.1.62
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UniProtKB/TrEMBL
	O93874_COCLU \| O93874	:	3is3 3itd 3qwf 3qwh 3qwi 4fiz 4fj0 4fj1

3is3	APO FORM
3itd	Y167F MUTANT
3qwf	NADPH BOUND (HOLO FORM)
3qwh	KAEMPFEROL INHIBITED TERNARY COMPLEX
3qwi	COUMESTROL INHIBITED TERNARY COMPLEX
4fiz	COUMESTROL BINARY COMPLEX (APO FORM)
4fj0	3,7-DIHYDROXYFLAVONE INHIBITED TERNARY COMPLEX
4fj1	GENISTEIN INHIBITED TERNARY COMPLEX

Description

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Ligands, Modified Residues, Ions (3, 11)

Sites (11, 11)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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