4FIZ - JenaLib

Title :   CRYSTAL STRUCTURE OF THE BINARY COMPLEX BETWEEN A FUNGAL 17BETA-HYDROXYSTEROID DEHYDROGENASE (APO FORM) AND COUMESTROL

Authors :   A. Cassetta, D. Lamba, I. Krastanova

Date :   11 Jun 12 (Deposition) - 03 Jul 13 (Release) - 29 Oct 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)
Biol. Unit 2: A  (2x)
Biol. Unit 3: A  (4x)

Keywords :   Short Chain Dehydrogenase/Reductase, Rossmann Fold, Oxidoreductase, Nadp(H), Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Cassetta, D. Lamba, I. Krastanova, K. Kristan, M. Brunskole-Svegelj, J. Stojan, T. Lanisnik-Rizner
Crystallographic Studies On The Flavonoid Inhibition Of A Fungal 17Beta-Hydroxysteroid Dehydrogenase
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 8)

Asymmetric Unit (4, 8)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	CUE	1	Ligand/Ion	COUMESTROL
3	DMS	1	Ligand/Ion	DIMETHYL SULFOXIDE
4	GOL	5	Ligand/Ion	GLYCEROL

Biological Unit 1 (3, 14)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CUE	2	Ligand/Ion	COUMESTROL
3	DMS	2	Ligand/Ion	DIMETHYL SULFOXIDE
4	GOL	10	Ligand/Ion	GLYCEROL

Biological Unit 2 (3, 14)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CUE	2	Ligand/Ion	COUMESTROL
3	DMS	2	Ligand/Ion	DIMETHYL SULFOXIDE
4	GOL	10	Ligand/Ion	GLYCEROL

Biological Unit 3 (3, 28)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	CUE	4	Ligand/Ion	COUMESTROL
3	DMS	4	Ligand/Ion	DIMETHYL SULFOXIDE
4	GOL	20	Ligand/Ion	GLYCEROL

Sites (8, 8)

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:154 , PHE A:159 , GLY A:199 , PHE A:205 , SER A:209 , TYR A:212 , ILE A:213 , ALA A:228 , GOL A:307 , HOH A:484 , HOH A:553	BINDING SITE FOR RESIDUE CUE A 301
2	AC2	SOFTWARE	LYS A:74 , GLU A:82 , LYS A:85 , LEU A:86 , HOH A:560 , HOH A:561	BINDING SITE FOR RESIDUE DMS A 302
3	AC3	SOFTWARE	LYS A:19 , GLY A:145 , ARG A:147 , VAL A:251 , LYS A:253 , HOH A:517 , HOH A:540	BINDING SITE FOR RESIDUE GOL A 303
4	AC4	SOFTWARE	LYS A:157 , ASP A:158 , PHE A:159 , SER A:160 , ARG A:179 , ALA A:270 , HOH A:432 , HOH A:455 , HOH A:510	BINDING SITE FOR RESIDUE GOL A 304
5	AC5	SOFTWARE	ILE A:71 , GLN A:89 , HOH A:499 , HOH A:500	BINDING SITE FOR RESIDUE GOL A 305
6	AC6	SOFTWARE	LYS A:163 , HIS A:211 , PRO A:214 , HOH A:556	BINDING SITE FOR RESIDUE GOL A 306
7	AC7	SOFTWARE	ASN A:154 , PHE A:159 , GLY A:199 , ASP A:266 , ALA A:269 , CUE A:301 , HOH A:541 , HOH A:554	BINDING SITE FOR RESIDUE GOL A 307
8	AC8	SOFTWARE	GLY A:25 , GLY A:27 , ALA A:50 , HOH A:443	BINDING SITE FOR RESIDUE CL A 308

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains d4fiza_ A: automated matches                                                                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee............hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee......hhhhhhhhhh.hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fiz A  11 YIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDFSVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASPLHRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDGGAA 270
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (3, 3)

Visualization

Interactive Views

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CUE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		DMS	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GOL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4fiz)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

Still Images

Databases and Analysis Tools

Databases

Access by PDB/NDB ID
	4fiz
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	O93874_COCLU \| O93874
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

Access by Enzyme Classificator (EC Number)
	1.1.1.62
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Description