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(-) Description

Title :  THE STRUCTURE OF COWPOX VIRUS CPXV018 (OMCP)
 
Authors :  E. Lazear, L. W. Peterson, C. A. Nelson, D. H. Fremont, Center For Stru Genomics Of Infectious Diseases (Csgid)
Date :  01 Jun 12  (Deposition) - 20 Jun 12  (Release) - 09 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  X,Y,Z
Biol. Unit 1:  X  (1x)
Biol. Unit 2:  Y  (1x)
Biol. Unit 3:  Z  (1x)
Keywords :  Viral Immune Evasion Proteins, Structural Genomics, Nkg2D Decoy Ligand, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid, Secreted, Nkg2D Binding, Fcrl5 Binding, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Lazear, L. W. Peterson, C. A. Nelson, D. H. Fremont
Crystal Structure Of The Cowpox Virus-Encoded Nkg2D Ligand Omcp.
J. Virol. V. 87 840 2013
PubMed-ID: 23115291  |  Reference-DOI: 10.1128/JVI.01948-12

(-) Compounds

Molecule 1 - CPXV018 PROTEIN
    Chains: X, Y, Z
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21A(+)
    Expression System Strain: BL21(DE3)RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 20-168
    Gene: CPXV018 CDS, OMCP
    Organism Common: CPXV
    Organism Scientific: COWPOX VIRUS
    Organism Taxid: 10243
    Strain: BRIGHTON RED
    Synonym: OMCP, ORTHOPOX VIRUS MHC CLASS I-LIKE PROTEIN

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : XYZ
Biological Unit 1 (1x): X  
Biological Unit 2 (1x):  Y 
Biological Unit 3 (1x):   Z

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4FFE)

(-) Sites  (0, 0)

(no "Site" information available for 4FFE)

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1X:83 -X:133
2Y:83 -Y:133
3Z:83 -Z:133

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FFE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FFE)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain X from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeee..eeeeeeeeee..eeeeee....eee.hhhhh...hhhhhhhhhhhhhhhh.........eeeeeeeeeeeee..eeeeeeeeee..ee........hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ffe X   0 GHKLAFNFNLEINGSDTHSTVDVYLDDSQIITFDGKDIRPTIPFMIGDEIFLPFYKNVFSEFFSLFRRVPTSTPYEDLTYFYECDYTDNKSTFDQFYLYNGEEYTVKTQEATNKNMWLTTSEFRLKKWFDGEDCIMHLRSLVRKMEDSKR 149
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149


Chain Y from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeee..eeeeeeeeee..eeeeee....eee.hhhhh...hhhhhhhhhhhhhhhh..........eeeeeeeeeeee..eeeeeeeeee..ee........hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ffe Y   0 GHKLAFNFNLEINGSDTHSTVDVYLDDSQIITFDGKDIRPTIPFMIGDEIFLPFYKNVFSEFFSLFRRVPTSTPYEDLTYFYECDYTDNKSTFDQFYLYNGEEYTVKTQEATNKNMWLTTSEFRLKKWFDGEDCIMHLRSLVRKMEDSKR 149
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149


Chain Z from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeee..eeeeeeeeee..eeeeee....eee.hhhhh...hhhhhhhhhhhhhhhh.........eeeeeeeeeeeee..eeeeeeeeee..eee.......hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ffe Z   0 GHKLAFNFNLEINGSDTHSTVDVYLDDSQIITFDGKDIRPTIPFMIGDEIFLPFYKNVFSEFFSLFRRVPTSTPYEDLTYFYECDYTDNKSTFDQFYLYNGEEYTVKTQEATNKNMWLTTSEFRLKKWFDGEDCIMHLRSLVRKMEDSKR 149
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FFE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FFE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FFE)

(-) Gene Ontology  (0, 0)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        Q8QN43_COWPX | Q8QN43: 4pdc

(-) Related Entries Specified in the PDB File

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