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(-) Description

Title :  STRUCTURE OF SUSE WITH ALPHA-CYCLODEXTRIN
 
Authors :  N. M. Koropatkin, E. A. Cameron, E. C. Martens
Date :  30 May 12  (Deposition) - 29 Aug 12  (Release) - 24 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Starch Binding, Extracellular, Outermembrane, Carbohydrate-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. A. Cameron, M. A. Maynard, C. J. Smith, T. J. Smith, N. M. Koropatkin, E. C. Martens
Multidomain Carbohydrate-Binding Proteins Involved In Bacteroides Thetaiotaomicron Starch Metabolism.
J. Biol. Chem. V. 287 34614 2012
PubMed-ID: 22910908  |  Reference-DOI: 10.1074/JBC.M112.397380

(-) Compounds

Molecule 1 - OUTER MEMBRANE PROTEIN SUSE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28TEV
    Expression System Strain: ROSETTA(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BT_3700, SUSE
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON
    Organism Taxid: 226186
    Strain: ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1ACX1Ligand/IonALPHA-CYCLODEXTRIN (CYCLOHEXA-AMYLOSE)
2EDO3Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:192 , LYS A:221 , ASN A:252 , ARG A:326 , TRP A:336 , ARG A:350 , ASN A:353 , LEU A:354 , ILE A:355 , ASP A:356 , EDO A:402 , HOH A:522BINDING SITE FOR RESIDUE ACX A 401
2AC2SOFTWAREACX A:401BINDING SITE FOR RESIDUE EDO A 402
3AC3SOFTWAREGLY A:259 , TRP A:260 , HOH A:521BINDING SITE FOR RESIDUE EDO A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FEM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FEM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4FEM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4FEM)

(-) Exons   (0, 0)

(no "Exon" information available for 4FEM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee.........eee.ee......eeeeeeee...eeeeee.............eeeee.....ee....eee...eeeeeeeeeeee..eeeeeeeeee..eeeehhhhh.....hhhhh..........ee.......ee.eeee....hhhh.eeeee..eeee.......hhhhh......ee.....eeee....eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fem A 174 SLTPPKTMFIVGSMLDTDWKVWKPMAGVYGMDGQFYSMIYFDANSEFKFGTKENEYIGINDNRVTVTDKAGAGVSGSDNFVVENAGWYLFYVKAAVKGDDYQFTITFYPAEVYLFGNTTGGSWAFNDEWKFTVPATKDGNFVSPAMTASGEVRMCFKTDLDWWRTEFTLHDGEIFYRDFNLIDSWTEKGDGYSIQGSAGNVIHLNFTAGTGEKK 387
                                   183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4FEM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FEM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FEM)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SUSE_BACTN | G8JZT0: 4fch

(-) Related Entries Specified in the PDB File

4fch SUSE WITH MALTOHEPTAOSE
4fe9 SUSF WITH MALTOHEPTAOSE