4FCH - JenaLib

Title :   CRYSTAL STRUCTURE SUSE FROM BACTEROIDES THETAIOTAOMICRON WITH MALTOHEPTAOSE

Authors :   N. M. Koropatkin, E. A. Cameron, E. C. Martens

Date :   24 May 12 (Deposition) - 29 Aug 12 (Release) - 24 Oct 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.30

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Starch Binding, Outermembrane, Extracellular, Carbohydrate-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. A. Cameron, M. A. Maynard, C. J. Smith, T. J. Smith, N. M. Koropatkin, E. C. Martens
Multidomain Carbohydrate-Binding Proteins Involved In Bacteroides Thetaiotaomicron Starch Metabolism.
J. Biol. Chem. V. 287 34614 2012
PubMed-ID: 22910908 | Reference-DOI: 10.1074/JBC.M112.397380

Compounds

Molecule 1 - OUTER MEMBRANE PROTEIN SUSE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-28TEV
	Expression System Strain	:	ROSETTA(DE3) PLYSS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	BT_3700, SUSE
	Organism Scientific	:	BACTEROIDES THETAIOTAOMICRON
	Organism Taxid	:	226186
	Strain	:	ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 21)

Asymmetric Unit (3, 21)

No.	Name	Count	Type	Full Name
1	EDO	10	Ligand/Ion	1,2-ETHANEDIOL
2	GLC	7	Ligand/Ion	ALPHA-D-GLUCOSE
3	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 14)

No.	Name	Count	Type	Full Name
1	EDO	5	Ligand/Ion	1,2-ETHANEDIOL
2	GLC	7	Ligand/Ion	ALPHA-D-GLUCOSE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 7)

No.	Name	Count	Type	Full Name
1	EDO	5	Ligand/Ion	1,2-ETHANEDIOL
2	GLC	-1	Ligand/Ion	ALPHA-D-GLUCOSE
3	SO4	2	Ligand/Ion	SULFATE ION

Sites (21, 21)

Asymmetric Unit (21, 21)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLC A:402 , HOH A:722 , TRP B:296 , ASP B:356 , HOH B:608	BINDING SITE FOR RESIDUE GLC A 401
02	AC2	SOFTWARE	GLC A:401 , GLC A:403 , HOH A:552 , HOH A:722 , ARG B:326 , TRP B:335 , ILE B:355 , ASP B:356	BINDING SITE FOR RESIDUE GLC A 402
03	AC3	SOFTWARE	GLC A:402 , GLC A:404 , HOH A:616 , ARG B:326 , TRP B:336 , ARG B:350 , ASN B:353 , LEU B:354 , ILE B:355	BINDING SITE FOR RESIDUE GLC A 403
04	AC4	SOFTWARE	TRP A:296 , GLC A:403 , GLC A:405 , HOH A:538 , HOH A:743 , HOH A:796 , ASN B:353	BINDING SITE FOR RESIDUE GLC A 404
05	AC5	SOFTWARE	TRP A:296 , ARG A:326 , TRP A:335 , TRP A:336 , ILE A:355 , GLC A:404 , GLC A:406 , HOH A:558 , HOH A:796 , ASN B:353	BINDING SITE FOR RESIDUE GLC A 405
06	AC6	SOFTWARE	ARG A:326 , TRP A:336 , ARG A:350 , ASN A:353 , LEU A:354 , ILE A:355 , GLC A:405 , GLC A:407 , HOH A:556 , HOH A:606 , ILE B:355	BINDING SITE FOR RESIDUE GLC A 406
07	AC7	SOFTWARE	ASN A:353 , ILE A:355 , GLC A:406 , HOH A:755 , HOH A:757 , HOH A:758 , ASP B:356 , HOH B:644	BINDING SITE FOR RESIDUE GLC A 407
08	AC8	SOFTWARE	PRO A:307 , ALA A:308 , THR A:309 , GLY A:312 , HOH A:689 , HOH A:778 , SER B:322 , HOH B:527 , HOH B:542	BINDING SITE FOR RESIDUE SO4 A 408
09	AC9	SOFTWARE	TYR A:202 , PHE A:352 , ASN A:353	BINDING SITE FOR RESIDUE SO4 A 409
10	BC1	SOFTWARE	PRO A:178 , LYS A:179 , THR A:180 , THR A:224	BINDING SITE FOR RESIDUE EDO A 410
11	BC2	SOFTWARE	PRO A:197 , MET A:198 , TYR A:349 , EDO A:414 , HOH A:527 , HOH A:790	BINDING SITE FOR RESIDUE EDO A 411
12	BC3	SOFTWARE	PRO A:282 , ALA A:283 , GLU A:284 , LYS A:303	BINDING SITE FOR RESIDUE EDO A 412
13	BC4	SOFTWARE	TYR A:202 , ARG A:337 , HOH A:758	BINDING SITE FOR RESIDUE EDO A 413
14	BC5	SOFTWARE	LYS A:196 , PRO A:197 , SER A:210 , TYR A:349 , EDO A:411 , HOH A:690	BINDING SITE FOR RESIDUE EDO A 414
15	BC6	SOFTWARE	PRO B:307 , ALA B:308 , THR B:309 , GLY B:312 , HOH B:616 , HOH B:670 , HOH B:788	BINDING SITE FOR RESIDUE SO4 B 401
16	BC7	SOFTWARE	ASN B:313 , VAL B:315 , HIS B:376 , HOH B:783	BINDING SITE FOR RESIDUE SO4 B 402
17	BC8	SOFTWARE	TYR A:286 , PHE A:298 , ASP A:300 , LYS A:330 , TYR B:286 , PHE B:298 , ASP B:300 , LYS B:330	BINDING SITE FOR RESIDUE EDO B 403
18	BC9	SOFTWARE	PRO B:178 , LYS B:179 , THR B:180 , THR B:224	BINDING SITE FOR RESIDUE EDO B 404
19	CC1	SOFTWARE	TYR B:349 , EDO B:407 , HOH B:521	BINDING SITE FOR RESIDUE EDO B 405
20	CC2	SOFTWARE	ASN A:233 , HOH A:635 , GLU B:228 , ARG B:236 , TYR B:274	BINDING SITE FOR RESIDUE EDO B 406
21	CC3	SOFTWARE	LYS B:196 , PRO B:197 , SER B:210 , TYR B:349 , EDO B:405 , HOH B:767	BINDING SITE FOR RESIDUE EDO B 407

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee.........eee.ee......eeeeeeee...eeeeee.............eeeee.....ee....eee...eeeeeeeeeeee..eeeeeeeeee..eeeehhhhh.....hhhhh..........ee.......ee.eeee....hhhh.eeeee..eeee.......hhhhhhhhhh.ee.....eeee....eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fch A 175 LTPPKTMFIVGSMLDTDWKVWKPMAGVYGMDGQFYSMIYFDANSEFKFGTKENEYIGINDNRVTVTDKAGAGVSGSDNFVVENAGWYLFYVKAAVKGDDYQFTITFYPAEVYLFGNTTGGSWAFNDEWKFTVPATKDGNFVSPAMTASGEVRMCFKTDLDWWRTEFTLHDGEIFYRDFNLIDSWTEKGDGYSIQGSAGNVIHLNFTAGTGEKK 387
                                   184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384

Chain B from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee.........eee.ee......eeeeeeee...eeeeee.............eeeee.....ee....eee...eeeeeeeeeeee..eeeeeeeeee..eeeehhhhh.....hhhhh..........ee.......ee.eeee....hhhh.eeeee..eeee.......hhhhhh.....ee.....eeee....eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fch B 175 LTPPKTMFIVGSMLDTDWKVWKPMAGVYGMDGQFYSMIYFDANSEFKFGTKENEYIGINDNRVTVTDKAGAGVSGSDNFVVENAGWYLFYVKAAVKGDDYQFTITFYPAEVYLFGNTTGGSWAFNDEWKFTVPATKDGNFVSPAMTASGEVRMCFKTDLDWWRTEFTLHDGEIFYRDFNLIDSWTEKGDGYSIQGSAGNVIHLNFTAGTGEKK 387
                                   184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

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