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(-) Description

Title :  CRYSTAL STRUCTURE OF THE SALICYLATE 1,2-DIOXYGENASE FROM PSEUDOAMINOBACTER SALICYLATOXIDANS W104Y MUTANT
 
Authors :  M. Ferraroni, F. Briganti, I. Matera
Date :  23 May 12  (Deposition) - 26 Sep 12  (Release) - 28 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Beta-Sandwich, Metalloprotein, Dioxygenase, Aromatic Compound Degradation, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Ferraroni, L. Steimer, I. Matera, S. Burger, A. Scozzafava, A. Stolz, F. Briganti
The Generation Of A 1-Hydroxy-2-Naphthoate 1, 2-Dioxygenase By Single Point Mutations Of Salicylate 1, 2-Dioxygenase - Rational Design Of Mutants And The Crystal Structures Of Th A85H And W104Y Variants.
J. Struct. Biol. V. 180 563 2012
PubMed-ID: 22960182  |  Reference-DOI: 10.1016/J.JSB.2012.08.007

(-) Compounds

Molecule 1 - GENTISATE 1,2-DIOXYGENASE
    Chains: A
    EC Number: 1.13.11.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: JM109
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: PSEUDAMINOBACTER SALICYLATOXIDANS
    Organism Taxid: 93369
    Strain: BN12
    Synonym: SALICYLATE 1,2-DIOXYGENASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1FE1Ligand/IonFE (III) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:119 , HIS A:121 , HIS A:160 , HOH A:544 , HOH A:545 , HOH A:621BINDING SITE FOR RESIDUE FE A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FBF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FBF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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Chain A from PDB  Type:PROTEIN  Length:340
                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4fbfa_ A: automated matches                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhh..hhhhh..............eeehhhhhhhhhhhhhhhh.....eee................eeeeeee....eeeeeee...eeeeeee.eeeeeee..eeeeee...eeee.....eeeee.....eeeeeeehhhhhhhh....ee.......hhhhhhhh.....hhhhh.........eehhhhhhhhhhhhhhhhhh.........eeeee..............eeeeeee........eee...eeeeeee..eeeee..eeeee....eeee.....eeeee...eeeeeeehhhhhhhh....eee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fbf A  16 QPKDTPELRALYKSFEEESIIPLWTQGDLMPIHPKSKAVPHVWKWSTLLRLARKSGELVPVGRRALGLANPGLGGNAYISPTMYAGIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNGDPVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDGLDIPFSQQMDVGFFEFYATPNFSRGERLWCHPGLRPLSGLQNTVASPIGAYRWEFTDRALTEQLLLEDEGQPATVAPGHAAIRYVNPTTGGDVMPTLRCEFHRLRAGTETATRNEVGSTVFQVFEGAGAVVMNGETTKLEKGDMFVVPSWVPWSLQAETQFDLFRFSDAPIMEALSFMRTKIEGQ 367
                                    25        35     || 46        56        66        76 ||     90       100       110       120       130       140       150       160       170       180       190||     207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367
                                                    41|                                 78|                                                                                                         191|                                                                                                                                                                        
                                                     43                                  83                                                                                                          199
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FBF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FBF)

(-) Gene Ontology  (3, 3)

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 Related Entries

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        Q67FT0_PSESE | Q67FT0: 2phd 3njz 3nkt 3nl1 3nst 3nvc 3nw4 4fag 4fah

(-) Related Entries Specified in the PDB File

4fag 4fah