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(-) Description

Title :  CRYSTAL STRUCTURE OF THE SALICYLATE 1,2-DIOXYGENASE FROM PSEUDOAMINOBACTER SALICYLATOXIDANS W104Y MUTANT IN COMPLEX WITH GENTISATE
 
Authors :  M. Ferraroni, F. Briganti, I. Matera
Date :  22 May 12  (Deposition) - 26 Sep 12  (Release) - 28 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Beta-Sandwich, Metalloprotein, Dioxygenase, Aromatic Compound Degradation, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Ferraroni, L. Steimer, I. Matera, S. Burger, A. Scozzafava, A. Stolz, F. Briganti
The Generation Of A 1-Hydroxy-2-Naphthoate 1, 2-Dioxygenase By Single Point Mutations Of Salicylate 1, 2-Dioxygenase - Rational Design Of Mutants And The Crystal Structures Of Th A85H And W104Y Variants.
J. Struct. Biol. V. 180 563 2012
PubMed-ID: 22960182  |  Reference-DOI: 10.1016/J.JSB.2012.08.007

(-) Compounds

Molecule 1 - GENTISATE 1,2-DIOXYGENASE
    Chains: A
    EC Number: 1.13.11.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: JM109
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: PSEUDAMINOBACTER SALICYLATOXIDANS
    Organism Taxid: 93369
    Strain: BN12

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
1FE1Ligand/IonFE (III) ION
2GOL1Ligand/IonGLYCEROL
3GTQ1Ligand/Ion2,5-DIHYDROXYBENZOIC ACID
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2GOL4Ligand/IonGLYCEROL
3GTQ4Ligand/Ion2,5-DIHYDROXYBENZOIC ACID

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:119 , HIS A:121 , HIS A:160 , GTQ A:402BINDING SITE FOR RESIDUE FE A 401
2AC2SOFTWAREARG A:83 , TYR A:104 , GLN A:108 , HIS A:119 , HIS A:121 , ARG A:127 , HIS A:160 , HIS A:162 , ASP A:174 , FE A:401BINDING SITE FOR RESIDUE GTQ A 402
3AC3SOFTWAREARG A:209 , HIS A:213 , PHE A:237 , GLU A:244 , HOH A:560BINDING SITE FOR RESIDUE GOL A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4FAG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4FAG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:362
                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4faga_ A: automated matches                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhh....hhhhhhhhh..........eeehhhhhhhhhhhhhhhh.........eee................eeeeeee........eee...eeeeeee...eeeee..eeeee....eeee.....eeeee.....eeeeeeehhhhhhhh....eee.............hhhhhhhh.....hhhhh.........eehhhhhhhhhhhhhhhhhh.........eeeee..............eeeeeee........eee...eeeeeee.eeeeee..eeeeee...eeee.....eeeee...eeeeeeehhhhhhhh....eee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4fag A   6 LDHESVTQAMQPKDTPELRALYKSFEEESIIPLWTQLGDLMPIHPKSKAVPHVWKWSTLLRLARKSGELVPVGRGGERRALGLANPGLGGNAYISPTMYAGIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTVVNGDPVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDGLDIPFSQQMDVGFFEFGSDRVTDYATPNFSRGERLWCHPGLRPLSGLQNTVASPIGAYRWEFTDRALTEQLLLEDEGQPATVAPGHAAIRYVNPTTGGDVMPTLRCEFHRLRAGTETATRNEVGSTVFQVFEGAGAVVMNGETTKLEKGDMFVVPSWVPWSLQAETQFDLFRFSDAPIMEALSFMRTKIEGQ 367
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4FAG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4FAG)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/TrEMBL
        Q67FT0_PSESE | Q67FT0: 2phd 3njz 3nkt 3nl1 3nst 3nvc 3nw4 4fah 4fbf

(-) Related Entries Specified in the PDB File

4fah 4fbf