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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE MOLYBDENUM STORAGE PROTEIN (MOSTO) FROM AZOTOBACTER VINELANDII LOADED WITH VARIOUS POLYOXOMETALATES
 
Authors :  B. Kowalewski, J. Poppe, K. Schneider, U. Demmer, E. Warkentin, U. Erml
Date :  15 May 12  (Deposition) - 18 Jul 12  (Release) - 02 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Molybdenum Storage, Atp Hydrolyzation, Hexamer, Polyoxometalate, Pom, Rossmanfold Like, Atp Hydrolysis, Molybdate, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  B. Kowalewski, J. Poppe, U. Demmer, E. Warkentin, T. Dierks, U. Ermler K. Schneider
Nature'S Polyoxometalate Chemistry: X-Ray Structure Of The Mo Storage Protein Loaded With Discrete Polynuclear Mo-O Clusters.
J. Am. Chem. Soc. V. 134 9768 2012
PubMed-ID: 22612644  |  Reference-DOI: 10.1021/JA303084N

(-) Compounds

Molecule 1 - MOLYBDENUM STORAGE PROTEIN SUBUNIT BETA
    ChainsB
    Organism ScientificAZOTOBACTER VINELANDII
    Organism Taxid354
    StrainATCC 13705
    SynonymMO STORAGE PROTEIN SUBUNIT BETA, MOSTO SUBUNIT BETA
 
Molecule 2 - MOLYBDENUM STORAGE PROTEIN SUBUNIT ALPHA
    ChainsA
    Organism ScientificAZOTOBACTER VINELANDII
    Organism Taxid354
    StrainATCC 13705
    SynonymMO STORAGE PROTEIN SUBUNIT ALPHA, MOSTO SUBUNIT ALPHA

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (3x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 10)

Asymmetric Unit (6, 10)
No.NameCountTypeFull Name
16M01Ligand/IonMO(6)-O(26) CLUSTER
28M02Ligand/IonBIS(MU4-OXO)-TETRAKIS(MU3-OXO)-HEXAKIS(MU2-OXO)-HEXADECAOXO-OCTAMOLYBDENUM (VI)
3ATP2Ligand/IonADENOSINE-5'-TRIPHOSPHATE
4MG2Ligand/IonMAGNESIUM ION
5MO1Ligand/IonMOLYBDENUM ATOM
6PO42Ligand/IonPHOSPHATE ION
Biological Unit 1 (4, 21)
No.NameCountTypeFull Name
16M03Ligand/IonMO(6)-O(26) CLUSTER
28M06Ligand/IonBIS(MU4-OXO)-TETRAKIS(MU3-OXO)-HEXAKIS(MU2-OXO)-HEXADECAOXO-OCTAMOLYBDENUM (VI)
3ATP6Ligand/IonADENOSINE-5'-TRIPHOSPHATE
4MG-1Ligand/IonMAGNESIUM ION
5MO-1Ligand/IonMOLYBDENUM ATOM
6PO46Ligand/IonPHOSPHATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS B:42 , GLY B:44 , GLY B:45 , GLN B:46 , SER B:47 , GLY B:77 , ALA B:78 , GLY B:79 , THR B:169 , LYS B:189 , ASP B:190 , GLY B:193 , TYR B:195 , ALA B:197 , ASN B:198 , PRO B:199 , LYS B:200 , SER B:224 , ILE B:225 , HOH B:402 , HOH B:503 , HOH B:507 , HOH B:555 , HOH B:557 , HOH B:596 , HOH B:633 , HOH B:670BINDING SITE FOR RESIDUE ATP B 301
02AC2SOFTWARETYR A:155 , HIS A:156 , HIS A:157 , HIS A:158 , 8M0 A:303 , GLY B:127 , GLY B:128 , ALA B:129 , GLY B:130 , PHE B:146 , SER B:147 , MET B:149 , PRO B:151 , LEU B:176 , PHE B:180 , MG B:304 , 6M0 B:305 , HOH B:418 , HOH B:427 , HOH B:449 , HOH B:485 , HOH B:497 , HOH B:502 , HOH B:522 , HOH B:561 , HOH B:571 , HOH B:592 , HOH B:603 , HOH B:615BINDING SITE FOR RESIDUE 8M0 B 302
03AC3SOFTWAREARG B:210 , GLU B:242 , HIS B:262BINDING SITE FOR RESIDUE PO4 B 303
04AC4SOFTWARESER B:147 , MET B:149 , 8M0 B:302 , HOH B:656BINDING SITE FOR RESIDUE MG B 304
05AC5SOFTWAREPRO A:131 , 8M0 A:303 , ASP B:108 , LYS B:153 , 8M0 B:302 , HOH B:484 , HOH B:518 , HOH B:571 , HOH B:592 , HOH B:612BINDING SITE FOR RESIDUE 6M0 B 305
06AC6SOFTWARELYS A:45 , GLY A:47 , GLY A:48 , ARG A:49 , GLY A:79 , ALA A:80 , GLY A:81 , ARG A:85 , GLU A:190 , ASN A:191 , VAL A:192 , GLY A:194 , TYR A:196 , ALA A:198 , ASP A:199 , PRO A:200 , ASN A:201 , PRO A:225 , LEU A:226 , PRO A:227 , MG A:302 , HOH A:414 , HOH A:420 , HOH A:430 , HOH A:431 , HOH A:435 , HOH A:444 , HOH A:474 , HOH A:476 , HOH A:545 , HOH B:415BINDING SITE FOR RESIDUE ATP A 301
07AC7SOFTWAREGLU A:190 , PRO A:227 , ATP A:301 , HOH A:430 , HOH A:433BINDING SITE FOR RESIDUE MG A 302
08AC8SOFTWAREPRO A:103 , ALA A:106 , SER A:107 , GLY A:110 , GLN A:111 , HIS A:114 , TYR A:127 , GLU A:129 , HIS A:130 , PRO A:131 , SER A:150 , PRO A:153 , PRO A:154 , HIS A:156 , PO4 A:305 , HOH A:481 , HOH A:505 , HOH A:518 , HOH A:533 , HOH A:606 , HOH A:637 , 8M0 B:302 , 6M0 B:305 , HOH B:571 , HOH B:612 , HOH B:615BINDING SITE FOR RESIDUE 8M0 A 303
09AC9SOFTWAREHIS A:140 , HOH A:643 , HOH A:644 , HOH A:645 , HOH A:646BINDING SITE FOR RESIDUE MO A 304
10BC1SOFTWARE8M0 A:303 , HOH A:481BINDING SITE FOR RESIDUE PO4 A 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4F6T)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4F6T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F6T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F6T)

(-) Exons   (0, 0)

(no "Exon" information available for 4F6T)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:244
                                                                                                                                                                                                                                                                                    
               SCOP domains d4f6ta_ A: automated matches                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeehhhhhh.hhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.eeeee....hhhhh.........hhhhhhhhhhhhhh..eeeeee....ee.......hhhhh.ee.eeehhhhhhh......hhhhhhhhhh.....eeeeee....hhhhhhhh.....eeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f6t A  33 RPIRLLPWLQVVKIGGRVMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTGVRPA 276
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272    

Chain B from PDB  Type:PROTEIN  Length:268
                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh...hhhhhhhhhh.........eeeeee....hhhhhhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh....eeeee....hhhhh...........hhhhhhhhhhhhhh..eeeeee....ee...........ee.eeehhhhhhh.......hhhhhhhhhhh....eeeeee....hhhhhhhh.....eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f6t B   3 NSTAELEELLMQRSLTDPQLQAAAAAAADFRILPDATVIKIGGQSVIDRGRAAVYPLVDEIVAARKNHKLLIGTGAGTRARHLYSIAAGLGLPAGVLAQLGSSVADQNAAMLGQLLAKHGIPVVGGAGLSAVPLSLAEVNAVVFSGMPPYKLWMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGLHDSILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTIITAS 270
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262        

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F6T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F6T)

(-) Gene Ontology  (4, 8)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MOSA_AZOVD | P843082ogx 4ndo 4ndp 4ndq 4ndr
        MOSB_AZOVD | P842532ogx 4ndo 4ndp 4ndq 4ndr

(-) Related Entries Specified in the PDB File

2ogx MOSTO LOADED WITH POLYTUNGSTATE CLUSTERS