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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE MOLYBDENUM STORAGE PROTEIN FROM AZOTOBACTER VINELANDII LOADED WITH POLYOXOTUNGSTATES (WSTO)
 
Authors :  J. Schemberg, E. Warkentin, U. Ermler
Date :  09 Jan 07  (Deposition) - 24 Apr 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  Open Alpha/Beta Structure, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Schemberg, K. Schneider, U. Demmer, E. Warkentin, A. Muller, U. Ermler
Towards Biological Supramolecular Chemistry: A Variety Of Pocket-Templated, Individual Metal Oxide Cluster Nucleation In The Cavity Of A Mo/W-Storage Protein.
Angew. Chem. Int. Ed. Engl. V. 46 2408 2007
PubMed-ID: 17304608  |  Reference-DOI: 10.1002/ANIE.200604858

(-) Compounds

Molecule 1 - MOLYBDENUM STORAGE PROTEIN SUBUNIT ALPHA
    ChainsA
    Organism ScientificAZOTOBACTER VINELANDII
    Organism Taxid354
    StrainDSMZ 366
    SynonymMO STORAGE PROTEIN ALPHA SUBUNIT, MOSTO SUBUNIT ALPHA
 
Molecule 2 - MOLYBDENUM STORAGE PROTEIN SUBUNIT BETA
    ChainsB
    Organism ScientificAZOTOBACTER VINELANDII
    Organism Taxid354
    StrainDSMZ 366
    SynonymMO STORAGE PROTEIN SUBUNIT BETA, MOSTO SUBUNIT BETA

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (3x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 37)

Asymmetric Unit (6, 37)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG1Ligand/IonMAGNESIUM ION
3MSE9Mod. Amino AcidSELENOMETHIONINE
4PO42Ligand/IonPHOSPHATE ION
5W23Ligand/IonTUNGSTEN ION
6WO31Ligand/IonTRI-TUNGSTEN(VI) OXIDE COMPLEX
Biological Unit 1 (4, 39)
No.NameCountTypeFull Name
1ATP3Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3MSE27Mod. Amino AcidSELENOMETHIONINE
4PO46Ligand/IonPHOSPHATE ION
5W-1Ligand/IonTUNGSTEN ION
6WO33Ligand/IonTRI-TUNGSTEN(VI) OXIDE COMPLEX

(-) Sites  (28, 28)

Asymmetric Unit (28, 28)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:190 , PRO A:227 , ATP A:281 , HOH A:3438BINDING SITE FOR RESIDUE MG A 291
02AC2SOFTWARELYS B:42 , GLY B:44 , GLY B:45 , GLN B:46 , SER B:47 , LYS B:189 , PO4 B:293 , HOH B:3246BINDING SITE FOR RESIDUE PO4 B 292
03AC3SOFTWAREALA B:78 , GLY B:79 , ARG B:168 , THR B:169 , PO4 B:292 , HOH B:3072 , HOH B:3079 , HOH B:3182BINDING SITE FOR RESIDUE PO4 B 293
04AC4SOFTWAREGLN A:136 , ILE A:139 , HIS A:140 , HOH A:3413 , HOH A:3416BINDING SITE FOR RESIDUE WO3 A 2008
05AC5SOFTWARELYS A:45 , GLY A:47 , GLY A:48 , ARG A:49 , GLY A:79 , ALA A:80 , GLY A:81 , ARG A:85 , GLU A:190 , ASN A:191 , VAL A:192 , GLY A:194 , ILE A:195 , TYR A:196 , ALA A:198 , ASP A:199 , PRO A:200 , ASN A:201 , PRO A:225 , LEU A:226 , PRO A:227 , MG A:291 , HOH A:3035 , HOH A:3042 , HOH A:3054 , HOH A:3075 , HOH A:3171 , HOH A:3210 , HOH A:3302 , HOH A:3438 , HOH B:3090BINDING SITE FOR RESIDUE ATP A 281
06AC6SOFTWAREHIS A:158 , W A:2004 , W B:2002 , W B:2006 , HOH B:3312BINDING SITE FOR RESIDUE W B 2001
07AC7SOFTWAREW A:2004 , W A:2005 , GLY B:128 , ALA B:129 , W B:2001 , W B:2003 , W B:2006 , W B:2007 , HOH B:3314 , HOH B:3403BINDING SITE FOR RESIDUE W B 2002
08AC8SOFTWAREW A:2005 , HOH A:3313 , ALA B:129 , W B:2002 , W B:2007 , HOH B:3314BINDING SITE FOR RESIDUE W B 2003
09AC9SOFTWAREHIS A:157 , W A:2005 , W B:2001 , W B:2002 , HOH B:3367 , HOH B:3403BINDING SITE FOR RESIDUE W A 2004
10BC1SOFTWAREHIS A:157 , W A:2004 , W B:2002 , W B:2003 , HOH B:3363 , HOH B:3403BINDING SITE FOR RESIDUE W A 2005
11BC2SOFTWAREGLY B:130 , LEU B:176 , W B:2001 , W B:2002 , W B:2007 , HOH B:3312BINDING SITE FOR RESIDUE W B 2006
12BC3SOFTWAREHIS A:157 , HOH A:3313 , ALA B:129 , GLY B:130 , W B:2002 , W B:2003 , W B:2006BINDING SITE FOR RESIDUE W B 2007
13BC4SOFTWAREW B:2010 , W B:2011 , HOH B:3426BINDING SITE FOR RESIDUE W B 2009
14BC5SOFTWARESER B:132 , W B:2009 , W B:2011 , W B:2031 , HOH B:3331BINDING SITE FOR RESIDUE W B 2010
15BC6SOFTWAREW B:2009 , W B:2010BINDING SITE FOR RESIDUE W B 2011
16BC7SOFTWAREW A:2013 , W A:2015 , W A:2017BINDING SITE FOR RESIDUE W A 2012
17BC8SOFTWAREGLU A:129 , W A:2012 , W A:2014 , W A:2015 , W A:2016 , W A:2017BINDING SITE FOR RESIDUE W A 2013
18BC9SOFTWAREGLU A:129 , W A:2013 , W A:2016 , HOH A:3311BINDING SITE FOR RESIDUE W A 2014
19CC1SOFTWAREALA A:106 , W A:2012 , W A:2013 , W A:2016 , HOH A:3095 , HOH A:3333BINDING SITE FOR RESIDUE W A 2015
20CC2SOFTWAREW A:2013 , W A:2014 , W A:2015 , HOH A:3311 , HOH A:3333 , HOH A:3338BINDING SITE FOR RESIDUE W A 2016
21CC3SOFTWAREGLU A:129 , W A:2012 , W A:2013 , HOH A:3467BINDING SITE FOR RESIDUE W A 2017
22CC4SOFTWAREASP B:108 , SER B:147 , W B:2028 , HOH B:3443BINDING SITE FOR RESIDUE W B 2027
23CC5SOFTWAREASP B:108 , W B:2027BINDING SITE FOR RESIDUE W B 2028
24CC6SOFTWAREW A:2026BINDING SITE FOR RESIDUE W A 2025
25CC7SOFTWAREW A:2025BINDING SITE FOR RESIDUE W A 2026
26CC8SOFTWAREW B:2030 , W B:2031 , HOH B:3426BINDING SITE FOR RESIDUE W B 2029
27CC9SOFTWAREW B:2029 , W B:2031BINDING SITE FOR RESIDUE W B 2030
28DC1SOFTWAREW B:2010 , W B:2029 , W B:2030BINDING SITE FOR RESIDUE W B 2031

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OGX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OGX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OGX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OGX)

(-) Exons   (0, 0)

(no "Exon" information available for 2OGX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:246
 aligned with MOSA_AZOVD | P84308 from UniProtKB/Swiss-Prot  Length:276

    Alignment length:246
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270      
           MOSA_AZOVD    31 GKRPIRLLPWLQVVKIGGRVMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTGVRPA 276
               SCOP domains d2ogxa_ A: automated matches                                                                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ---------AA_kinase-2ogxA01 A:40-249                                                                                                                                                                                        --------------------------- Pfam domains
         Sec.struct. author ..........eeeeeehhhhhh.hhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.eeeee....hhhhh.........hhhhhhhhhhhhhh..eeeeee....ee.......hhhhh.ee.eeehhhhhh.......hhhhhhhhhh.....eeeeee....hhhhhhhh.....eeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2ogx A  31 GKRPIRLLPWLQVVKIGGRVmDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAmLASEGVSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVmATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTGVRPA 276
                                    40        50|       60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230     | 240       250       260       270      
                                               51-MSE                                                             119-MSE                                                                                                              236-MSE                                    

Chain B from PDB  Type:PROTEIN  Length:268
 aligned with MOSB_AZOVD | P84253 from UniProtKB/Swiss-Prot  Length:270

    Alignment length:268
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262        
           MOSB_AZOVD     3 NSTAELEELLMQRSLTDPQLQAAAAAAADFRILPDATVIKIGGQSVIDRGRAAVYPLVDEIVAARKNHKLLIGTGAGTRARHLYSIAAGLGLPAGVLAQLGSSVADQNAAMLGQLLAKHGIPVVGGAGLSAVPLSLAEVNAVVFSGMPPYKLWMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGLHDSILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTIITAS 270
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------AA_kinase-2ogxB01 B:37-247                                                                                                                                                                                         ----------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh...hhhhhhhhhh.........eeeeee....hhhhhhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhh....eeeee....hhhhh...........hhhhhhhhhhhhhh..eeeeee....ee...........ee.eeehhhhhhh.......hhhhhhhhhhh....eeeeee....hhhhhhhh.....eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ogx B   3 NSTAELEELLmQRSLTDPQLQAAAAAAADFRILPDATVIKIGGQSVIDRGRAAVYPLVDEIVAARKNHKLLIGTGAGTRARHLYSIAAGLGLPAGVLAQLGSSVADQNAAmLGQLLAKHGIPVVGGAGLSAVPLSLAEVNAVVFSGmPPYKLWmRPAAEGVIPPYRTDAGCFLLAEQFGCKQmIFVKDEDGLYTANPKTSKDATFIPRISVDEmKAKGLHDSILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTIITAS 270
                                    12|       22        32        42        52        62        72        82        92       102       112|      122       132       142      |152   |   162       172       182  |    192       202       212   |   222       232       242       252       262        
                                     13-MSE                                                                                             113-MSE                             149-MSE  |                          185-MSE                        216-MSE                                                  
                                                                                                                                                                                   156-MSE                                                                                                              

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2OGX)

(-) Pfam Domains  (1, 2)

Asymmetric Unit

(-) Gene Ontology  (4, 8)

Asymmetric Unit(hide GO term definitions)
Chain A   (MOSA_AZOVD | P84308)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0030151    molybdenum ion binding    Interacting selectively and non-covalently with molybdenum (Mo) ions.
    GO:0045735    nutrient reservoir activity    Functions in the storage of nutritious substrates.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain B   (MOSB_AZOVD | P84253)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0030151    molybdenum ion binding    Interacting selectively and non-covalently with molybdenum (Mo) ions.
    GO:0045735    nutrient reservoir activity    Functions in the storage of nutritious substrates.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MOSA_AZOVD | P843084f6t 4ndo 4ndp 4ndq 4ndr
        MOSB_AZOVD | P842534f6t 4ndo 4ndp 4ndq 4ndr

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