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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CATHELIN-LIKE DOMAIN OF HUMAN CATHELICIDIN LL-37 (HCLD)
 
Authors :  M. Pazgier, E. Pozharski, E. Toth, W. Lu
Date :  01 May 12  (Deposition) - 27 Feb 13  (Release) - 20 Mar 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Cathelin-Like Domain, Pro-Domain Of Human Cathelicidin Ll-37, Cystatin-Like Fold, Antimicrobial Peptide, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Pazgier, B. Ericksen, M. Ling, E. Toth, J. Shi, X. Li, A. Galliher-Beckley, L. Lan, G. Zou, C. Zhan, W. Yuan, E. Pozharski, W. Lu
Structural And Functional Analysis Of The Pro-Domain Of Human Cathelicidin, Ll-37.
Biochemistry V. 52 1547 2013
PubMed-ID: 23406372  |  Reference-DOI: 10.1021/BI301008R

(-) Compounds

Molecule 1 - CATHELICIDIN ANTIMICROBIAL PEPTIDE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: PRO-DOMAIN OF HUMAN CATHELICIDIN LL-37, UNP RESIDUES 31- 133
    Gene: CAMP, CAP18, FALL39, HSD26
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 18 KDA CATIONIC ANTIMICROBIAL PROTEIN, CAP-18, HCAP-18, ANTIBACTERIAL PROTEIN FALL-39, FALL-39 PEPTIDE ANTIBIOTIC, ANTIBACTERIAL PROTEIN LL-37

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4EYC)

(-) Sites  (0, 0)

(no "Site" information available for 4EYC)

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:86 -A:97
2A:108 -A:125
3B:86 -B:97
4B:108 -B:125

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4EYC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EYC)

(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:103
                                                                                                                                       
               SCOP domains d4eyca_ A: automated matches                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhh...eeeeeeee............eeeeeeeeeeeee.....hhhhh.......eeeeeeee.........eeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 4eyc A  -3 GSHMQVLSYKEAVLRAIDGINQRSSDANLYRLLDLDPRTMDGDPDTPKPVSFTVKETVCPRTTQQSPEDCDFKKDGLVKRCMGTVTLNQARGSFDISCDKDNK 130
                               ||   36        46        56       |67        77        87        97       107       117       127   
                               0|                               64|                                                                
                               31                                66                                                                


Chain B from PDB  Type:PROTEIN  Length:99
                                                                                                                                   
               SCOP domains d4eycb_ B: automated matches                                                                        SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh...eeeeeeee............eeeeeeeeeeeee.....hhhhh.......eeeeeeee.........eeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 4eyc B  32 VLSYKEAVLRAIDGINQRSSDANLYRLLDLDPRTMDGDPDTPKPVSFTVKETVCPRTTQQSPEDCDFKKDGLVKRCMGTVTLNQARGSFDISCDKDNKR 131
                                    41        51        61  ||    72        82        92       102       112       122         
                                                           64|                                                                 
                                                            66
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 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EYC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EYC)

(-) Gene Ontology  (21, 21)

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        CAMP_HUMAN | P49913: 2fbs 2fbu 2fcg 2k6o 2lmf 2na3

(-) Related Entries Specified in the PDB File

1lxe CRYSTAL STRUCTURE OF THE CATHELICIDIN MOTIF OF PROTREGRINS
1pfp CATHELIN-LIKE MOTIF OF PROTREGRIN-3