4EVQ - JenaLib

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Title :   CRYSTAL STRUCTURE OF ABC TRANSPORTER FROM R. PALUSTRIS - SOLUTE BINDING PROTEIN (RPA0668) IN COMPLEX WITH 4-HYDROXYBENZOATE

Authors :   K. Michalska, J. C. Mack, S. Zerbs, F. R. Collart, A. Joachimiak, Midwes For Structural Genomics (Mcsg)

Date :   26 Apr 12 (Deposition) - 23 May 12 (Release) - 09 Jan 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.40

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Abc Transporter, Solute Binding Protein, Benzoate- Derivatives Binding, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Michalska, C. Chang, J. C. Mack, S. Zerbs, A. Joachimiak, F. R. Collart
Characterization Of Transport Proteins For Aromatic Compounds Derived From Lignin: Benzoate Derivative Binding Proteins.
J. Mol. Biol. V. 423 555 2012
PubMed-ID: 22925578 | Reference-DOI: 10.1016/J.JMB.2012.08.017

Molecule 1 - PUTATIVE ABC TRANSPORTER SUBUNIT, SUBSTRATE-BINDING COMPONENT
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21(DE3) MAGIC
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	HBAE, RPA0668
	Organism Scientific	:	RHODOPSEUDOMONAS PALUSTRIS
	Organism Taxid	:	258594
	Strain	:	CGA009

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (6, 25)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
3	GOL	2	Ligand/Ion	GLYCEROL
4	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
5	PHB	2	Ligand/Ion	P-HYDROXYBENZOIC ACID
6	SO4	5	Ligand/Ion	SULFATE ION

Biological Unit 1 (6, 14)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
3	GOL	1	Ligand/Ion	GLYCEROL
4	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
5	PHB	1	Ligand/Ion	P-HYDROXYBENZOIC ACID
6	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 2 (6, 11)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
3	GOL	1	Ligand/Ion	GLYCEROL
4	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
5	PHB	1	Ligand/Ion	P-HYDROXYBENZOIC ACID
6	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS A:93 , GLU A:98 , HOH A:737 , SER B:353 , ALA B:354 , ALA B:383 , ASP B:384	BINDING SITE FOR RESIDUE SO4 A 401
02	AC2	SOFTWARE	ARG A:138 , ARG A:157 , LYS A:190 , GLU A:385 , HOH A:585 , HOH A:641 , HOH A:692 , LYS B:86	BINDING SITE FOR RESIDUE SO4 A 402
03	AC3	SOFTWARE	LYS A:201 , HOH A:663 , LYS B:241 , HOH B:758	BINDING SITE FOR RESIDUE SO4 A 403
04	AC4	SOFTWARE	LYS A:241 , HOH A:698 , LYS B:201 , HOH B:743	BINDING SITE FOR RESIDUE SO4 A 404
05	AC5	SOFTWARE	GLY A:44 , THR A:45 , GLU A:81 , SER A:82 , PHE A:207 , PRO A:208 , HOH A:512 , HOH A:597 , ALA B:194	BINDING SITE FOR RESIDUE ACT A 405
06	AC6	SOFTWARE	TYR A:46 , LEU A:49 , VAL A:107 , HIS A:108 , SER A:109 , ASN A:130 , ALA A:131 , GLY A:132 , TYR A:178 , ALA A:180 , PHE A:230 , SER A:232 , PHE A:257 , PHE A:306	BINDING SITE FOR RESIDUE PHB A 406
07	AC7	SOFTWARE	TYR A:243 , PRO A:251 , LEU A:252 , ALA A:269 , ASP A:271 , HOH A:530	BINDING SITE FOR RESIDUE GOL A 407
08	AC8	SOFTWARE	PRO A:84 , HIS A:108 , TYR A:178 , ALA A:179 , HOH A:521	BINDING SITE FOR RESIDUE EDO A 408
09	AC9	SOFTWARE	LYS A:86 , ARG B:138 , ARG B:157 , LYS B:190 , HOH B:598	BINDING SITE FOR RESIDUE SO4 B 401
10	BC1	SOFTWARE	TYR B:46 , LEU B:49 , VAL B:107 , HIS B:108 , SER B:109 , ASN B:130 , ALA B:131 , GLY B:132 , TYR B:178 , ALA B:180 , MSE B:184 , SER B:232 , PHE B:257 , PHE B:306	BINDING SITE FOR RESIDUE PHB B 402
11	BC2	SOFTWARE	ASN B:285 , ALA B:286 , HOH B:533	BINDING SITE FOR RESIDUE ACT B 403
12	BC3	SOFTWARE	TYR B:243 , PRO B:251 , LEU B:252 , ALA B:269 , ASP B:271 , HOH B:561 , HOH B:800	BINDING SITE FOR RESIDUE GOL B 404
13	BC4	SOFTWARE	PRO B:84 , HIS B:108 , GLY B:110 , TYR B:178 , ALA B:179 , HOH B:531	BINDING SITE FOR RESIDUE EDO B 405

Asymmetric Unit

No.	Residues
1	A:141	-	A:389
2	B:141	-	B:389

Asymmetric Unit

No.	Residues
1	Gly A:105	-	Thr A:106
2	Phe A:207	-	Pro A:208
3	Gly B:105	-	Thr B:106
4	Phe B:207	-	Pro B:208

(no "SAP(SNP)/Variant" information available for 4EVQ)

(no "PROSITE Motif" information available for 4EVQ)

(no "Exon" information available for 4EVQ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:360
                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee.....hhhhhhhhhhhhhhhhhhh..ee..eeeeeeeee...hhhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhhhhh..eee....hhhhhh......eee...hhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhhhhhhhh..eeeeeeee......hhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhh.....eeee.hhh..hhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh.eeee..eeee..........eeeeeee..eeeeeeeee............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4evq A  32 GALKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLGGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIGTVHSGVAmAmVKIAREDGIPTIVPNAGADIITRAmCAPNVFRTSFANGQIGRATGDAmIKAGLKKAVTVTWKYAAGEEmVSGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGIPLWGPGFLTDGVEAAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYKIPPDVFAVQGWDAGQLLDAGVKAVGGDVAKRKELNAAmAAASFASPRGPFKLSAAHNPVQNFYLRELKGGKSVNLGLAAPAVADEAIGCKL 391
                                    41        51        61        71        81        91       101       111 | |   121       131       141       151       161 |     171       181  |    191       201       211       221       231       241       251       261       271       281       291       301       311       321       331      |341       351       361       371       381       391
                                                                                                           113-MSE                    140-MSE                163-MSE              184-MSE                                                                                                                                                   338-MSE                                                 
                                                                                                             115-MSE

Chain B from PDB  Type:PROTEIN  Length:371
                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh.eeeeeee.....hhhhhhhhhhhhhhhhhhh..ee..eeeeeeeee...hhhhhhhhhhhhhhh....eeee..hhhhhhhhhhhhhhhh..eee....hhhhhh......eee...hhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhhhhhhhh..eeeeeeee......hhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhh.....eeee.hhh..hhhhhhhhhh..eeee.......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh.eeee..eeee..........eeeeeee..eeeeeeeee............ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4evq B  21 GPFIRPSYAQAGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLGGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIGTVHSGVAmAmVKIAREDGIPTIVPNAGADIITRAmCAPNVFRTSFANGQIGRATGDAmIKAGLKKAVTVTWKYAAGEEmVSGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGIPLWGPGFLTDGVEAAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYKIPPDVFAVQGWDAGQLLDAGVKAVGGDVAKRKELNAAmAAASFASPRGPFKLSAAHNPVQNFYLRELKGGKSVNLGLAAPAVADEAIGCKL 391
                                    30        40        50        60        70        80        90       100       110  | |  120       130       140       150       160  |    170       180   |   190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390 
                                                                                                                      113-MSE                    140-MSE                163-MSE              184-MSE                                                                                                                                                   338-MSE                                                 
                                                                                                                        115-MSE

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4EVQ)

(no "CATH Domain" information available for 4EVQ)

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	Cis Peptide Bonds
		Gly A:105 - Thr A:106	[ RasMol ]
		Gly B:105 - Thr B:106	[ RasMol ]
		Phe A:207 - Pro A:208	[ RasMol ]
		Phe B:207 - Pro B:208	[ RasMol ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 25)

Sites (13, 13)

SS Bonds (2, 2)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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