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(-) Description

Title :  STRUCTURE OF BX-795 COMPLEXED WITH HUMAN TBK1 KINASE DOMAIN PHOSPHORYLATED ON SER172
 
Authors :  X. Ma, E. Helgason, Q. T. Phung, C. L. Quan, R. S. Iyer, M. W. Lee, K. K. Bowm M. A. Starovasnik, E. C. Dueber
Date :  25 Apr 12  (Deposition) - 23 May 12  (Release) - 29 Aug 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Kinase, Atp Binding, Phosphorylation, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Ma, E. Helgason, Q. T. Phung, C. L. Quan, R. S. Iyer, M. W. Lee, K. K. Bowman, M. A. Starovasnik, E. C. Dueber
Molecular Basis Of Tank-Binding Kinase 1 Activation By Transautophosphorylation.
Proc. Natl. Acad. Sci. Usa V. 109 9378 2012
PubMed-ID: 22619329  |  Reference-DOI: 10.1073/PNAS.1121552109

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE TBK1
    Chains: A, B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Taxid: 7108
    Fragment: KINASE DOMAIN, UNP RESIDUES 2-308
    Gene: TBK1, NAK
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NF-KAPPA-B-ACTIVATING KINASE, T2K, TANK-BINDING KINASE 1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 16)

Asymmetric/Biological Unit (5, 16)
No.NameCountTypeFull Name
1BX72Ligand/IonN-(3-{[5-IODO-4-({3-[(THIOPHEN-2-YLCARBONYL)AMINO]PROPYL}AMINO)PYRIMIDIN-2-YL]AMINO}PHENYL)PYRROLIDINE-1-CARBOXAMIDE
2GOL7Ligand/IonGLYCEROL
3IOD2Ligand/IonIODIDE ION
4SEP2Mod. Amino AcidPHOSPHOSERINE
5SO43Ligand/IonSULFATE ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:15 , GLN A:17 , GLY A:18 , ALA A:21 , ALA A:36 , LYS A:38 , MET A:86 , GLU A:87 , PHE A:88 , CYS A:89 , GLY A:92 , GLY A:139 , MET A:142 , THR A:156 , IOD A:402 , HOH A:522 , HOH A:557 , HOH A:650 , ILE B:14 , GLN B:17 , ASN B:22 , HOH B:523BINDING SITE FOR RESIDUE BX7 A 401
02AC2SOFTWARETHR A:156 , ASP A:157 , BX7 A:401 , HOH A:690BINDING SITE FOR RESIDUE IOD A 402
03AC3SOFTWAREARG A:187 , ARG A:191 , HOH A:685 , ASN B:230 , LYS B:231 , GLU B:232BINDING SITE FOR RESIDUE SO4 A 403
04AC4SOFTWAREARG A:127 , GLY A:294 , PHE A:295 , ASP A:296 , HOH A:580BINDING SITE FOR RESIDUE SO4 A 404
05AC5SOFTWAREVAL A:97 , GLU A:100 , ASN A:103 , PRO A:108 , GLU A:111 , HOH A:655BINDING SITE FOR RESIDUE GOL A 405
06AC6SOFTWAREASP A:33 , LEU A:34 , GLU A:87 , PHE A:88 , HOH A:544BINDING SITE FOR RESIDUE GOL A 406
07AC7SOFTWAREARG A:271 , HOH A:676BINDING SITE FOR RESIDUE GOL A 407
08AC8SOFTWAREILE A:14 , GLN A:17 , ASN A:22 , HOH A:539 , LEU B:15 , GLN B:17 , GLY B:18 , ALA B:21 , VAL B:23 , ALA B:36 , LYS B:38 , MET B:86 , GLU B:87 , PHE B:88 , CYS B:89 , GLY B:92 , GLY B:139 , MET B:142 , THR B:156 , IOD B:402 , GOL B:406 , HOH B:567 , HOH B:672BINDING SITE FOR RESIDUE BX7 B 401
09AC9SOFTWAREMET B:86 , THR B:156 , ASP B:157 , BX7 B:401 , HOH B:519BINDING SITE FOR RESIDUE IOD B 402
10BC1SOFTWAREASN A:230 , LYS A:231 , GLU A:232 , ARG B:187 , ARG B:191BINDING SITE FOR RESIDUE SO4 B 403
11BC2SOFTWAREHOH A:706 , ASP B:166 , GLY B:294 , PHE B:295 , ASP B:296 , HOH B:596 , HOH B:673BINDING SITE FOR RESIDUE GOL B 404
12BC3SOFTWAREASP B:33 , LEU B:34 , PHE B:35 , GLU B:87 , PHE B:88 , HOH B:615BINDING SITE FOR RESIDUE GOL B 405
13BC4SOFTWAREGLY A:0 , LEU A:11 , HOH A:539 , HOH A:564 , PRO B:90 , CYS B:91 , GLY B:92 , THR B:96 , BX7 B:401 , HOH B:672BINDING SITE FOR RESIDUE GOL B 406
14BC5SOFTWAREHIS B:64 , GLY B:121 , HOH B:564BINDING SITE FOR RESIDUE GOL B 407

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4EUU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4EUU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4EUU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4EUU)

(-) Exons   (0, 0)

(no "Exon" information available for 4EUU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...eeeeeeeeeee...eeeeeeee.....eeeeeee.hhhhhhhhhhhhhhhhhhhhh.......eeeeee......eeeeee.....hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee.....eeeee......ee............hhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhh...ee...hhhhhhhhhhhhhhhh.....eeee......eeee.........hhhhhhhhhhhhhhhh........hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4euu A   0 GSQSTSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVsLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILH 307
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169  |    179       189       199       209       219       229       239       249       259       269       279       289       299        
                                                                                                                                                                                                      172-SEP                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...eeeeeeeeeee...eeeeeeee.....eeeeeee.hhhhhhhhhhhhhhhhhhhhh.......eeeeee......eeeeee.....hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee.....eeeee......ee............hhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhh...ee...hhhhhhhhhhhhhhhh.....eeee......eeee.........hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4euu B   0 GSQSTSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVsLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILH 307
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169  |    179       189       199       209       219       229       239       249       259       269       279       289       299        
                                                                                                                                                                                                      172-SEP
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4EUU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4EUU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4EUU)

(-) Gene Ontology  (38, 38)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TBK1_HUMAN | Q9UHD2: 4efo 4eut 4im0 4im2 4im3 4iw0 4iwo 4iwp 4iwq 5eoa 5eof 5ep6

(-) Related Entries Specified in the PDB File

4eut