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(-) Description

Title :  CHIMERIC GST CONTAINING INSERTS OF KININOGEN PEPTIDES
 
Authors :  A. B. Amber, M. M. Sergei, P. Yi, Rita, R, Q. Xiaoping, P. -C. Marianne, C. M. William, Y. Vivien, R. M. Keith, A. K. Anton
Date :  26 Mar 12  (Deposition) - 16 May 12  (Release) - 19 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transferase, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. A. Bentley, S. M. Merkulov, Y. Peng, R. Rozmarynowycz, X. Qi, M. Pusztai-Carey, W. C. Merrick, V. C. Yee, K. R. Mccrae, A. A. Komar
Chimeric Glutathione S-Transferases Containing Inserts Of Kininogen Peptides: Potential Novel Protein Therapeutics.
J. Biol. Chem. V. 287 22142 2012
PubMed-ID: 22577144  |  Reference-DOI: 10.1074/JBC.M112.372854

(-) Compounds

Molecule 1 - CHIMERIC PROTEIN BETWEEN GSHKT10 AND DOMAIN 5 OF KININOGEN- 1
    Chains: A, B
    EC Number: 2.5.1.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-49, KINONOGEN 498-507, 50-228
    Organism Common: BLOOD FLUKE, HUMAN
    Organism Scientific: SCHISTOSOMA JAPONICUM, HOMO SAPIENS
    Organism Taxid: 6182, 9606
    Synonym: GLUTATHIONE S-TRANSFERASE CLASS-MU 26 KDA ISOZYME, GST 26, SJ26 ANTIGEN, SJGST/ALPHA-2-THIOL PROTEINASE INHIBITOR, FITZGERALD FACTOR, HIGH MOLECULAR WEIGHT, KININOGEN, DOMAIN 5 OF HUMAN HIGH MOLECULAR WEIGHT KININOGEN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4ECB)

(-) Sites  (0, 0)

(no "Site" information available for 4ECB)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ECB)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Phe A:62 -Pro A:63
2Leu A:65 -Pro A:66
3Trp A:211 -Pro A:212
4Leu B:65 -Pro B:66
5Trp B:211 -Pro B:212

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ECB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ECB)

(-) Exons   (0, 0)

(no "Exon" information available for 4ECB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhh....eeeee..........eee....eeehhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh..................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ecb A   2 SPILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDLEFPNLPYYIDGDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSKYIAWPLQGWQATFGGGDHP 226
                                    11        21        31    ||  64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224  
                                                             36|                                                                                                                                                                      
                                                              60                                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:199
                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhhhh....eeeee.......eee....eeehhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh...................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ecb B   2 SPILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERFPNLPYYIDGDVKLTQSMAIIRYIADKHNMLGGCPKERAEISMLEGAVLDIRYGVSRIAYSKDFETLKVDFLSKLPEMLKMFEDRLCHKTYLNGDHVTHPDFMLYDALDVVLYMDPMCLDAFPKLVCFKKRIEAIPQIDKYLKSSKYIAWPLQGWQATFGGGDHP 226
                                    11        21        31   ||   67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217         
                                                            35|                                                                                                                                                                    
                                                             62
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  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ECB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ECB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ECB)

(-) Gene Ontology  (31, 31)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Leu A:65 - Pro A:66   [ RasMol ]  
    Leu B:65 - Pro B:66   [ RasMol ]  
    Phe A:62 - Pro A:63   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GST26_SCHJA | P08515: 1b8x 1bg5 1dug 1gne 1gta 1gtb 1m99 1m9a 1m9b 1u87 1u88 1ua5 1y6e 3crt 3cru 3d0z 3qmz 4ai6 4akg 4akh 4aki 4ecc 4wr4 4wr5 5gzz
        KNG1_HUMAN | P01042: 1ny2 2wok 4asq 4asr 4ecc 5i25

(-) Related Entries Specified in the PDB File

4ecc