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(-) Description

Title :  CRYSTAL STRUCTURE OF MCCFLIKE PROTEIN (BA_5613) FROM BACILLUS ANTHRACIS STR. AMES
 
Authors :  B. Nocek, W. F. Anderson, A. Joachimiak, Center For Structural Geno Infectious Diseases (Csgid)
Date :  14 Mar 12  (Deposition) - 18 Apr 12  (Release) - 18 Apr 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Mccf-Like, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Serine Peptidase S66, Mccf-Like Function, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Nocek, A. Tikhonov, K. Severinov, W. F. Anderson, A. Joachimiak
Crystal Structure Of Mccflike Protein (Ba_5613) From Bacillus Anthracis Str. Ames
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MCCFLIKE PROTEIN (BA_5613)
    Chains: A, B, C, D
    EC Number: 3.4.21.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BA_5613, BAS5215, GBAA_5613
    Organism Common: ANTHRAX,ANTHRAX BACTERIUM
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 198094
    Strain: AMES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 29)

Asymmetric Unit (2, 29)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE28Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 15)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE14Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 14)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2MSE14Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:21 , SER A:22 , VAL A:24 , ARG A:29 , HOH A:859BINDING SITE FOR RESIDUE GOL A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4E5S)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Thr A:301 -Pro A:302
2Thr B:301 -Pro B:302
3Thr C:301 -Pro C:302
4Thr D:301 -Pro D:302

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4E5S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4E5S)

(-) Exons   (0, 0)

(no "Exon" information available for 4E5S)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:329
                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee....hhhhhhhhhhhhhhhhhhhh..eeee.............hhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhh..eee..hhhhhhh...hhhhhhhhhhhhhh...eee....ee..............ee....eeee.eeeeeeeeeeehhhhhhhh..........eeeeee....hhhhhhhhhhhhhhhhhh..hhhhh.eeeee..hhhhh.hhhhhhhhhhhhhhhh...eeeee..........eee..eeeeee.....eeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e5s A   0 AmLPTKLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLGGYNSNGLLKYLDYDLIRENPKFFCGYSDITALNNAIYTKTGLVTYSGPHFSSFGmEKGLEYTTDYFLQCLTSNKPIEVLPSETWSDDSWYIDQENRKFIKNEGYVSIHEGEATGDIIGGNmSTLNLLQGTSYmPNLKDKILFLEEDSLTGTSTLKTFDRYLHSLmQQQNFKHVKGIVIGKmQKGAECTIEDIQEmIASKPELAHIPIIANASFGHTTPIFTFPIGGRATIISSKEKTSITILTH 328
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199     | 209       219       229       239       249       259     | 269       279       289       299       309       319         
                             |                                                                                                                                       139-MSE                                                           205-MSE     217-MSE                         249-MSE         265-MSE       279-MSE                                             
                             1-MSE                                                                                                                                                                                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:329
                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee....hhhhhhhhhhhhhhhhhhhh..eeee.............hhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhh..eee..hhhhhhh...hhhhhhhhhhhhhh...eee....ee..............ee....eeee.eeeeeeeeeeehhhhhh............eeeeee....hhhhhhhhhhhhhhhhhh..hhhhh.eeeee..hhhhh.hhhhhhhhhhhhhhhh...eeeee..........eee..eeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e5s B   0 AmLPTKLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLGGYNSNGLLKYLDYDLIRENPKFFCGYSDITALNNAIYTKTGLVTYSGPHFSSFGmEKGLEYTTDYFLQCLTSNKPIEVLPSETWSDDSWYIDQENRKFIKNEGYVSIHEGEATGDIIGGNmSTLNLLQGTSYmPNLKDKILFLEEDSLTGTSTLKTFDRYLHSLmQQQNFKHVKGIVIGKmQKGAECTIEDIQEmIASKPELAHIPIIANASFGHTTPIFTFPIGGRATIISSKEKTSITILTH 328
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199     | 209       219       229       239       249       259     | 269       279       289       299       309       319         
                             1-MSE                                                                                                                                   139-MSE                                                           205-MSE     217-MSE                         249-MSE         265-MSE       279-MSE                                             


Chain C from PDB  Type:PROTEIN  Length:330
                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............eeeee....hhhhhhhhhhhhhhhhhhhhh.eeee.............hhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhh..eee..hhhhhhh...hhhhhhhhhhhhhh...eee....ee..............ee....eeee.eeeeeeeeeeehhhhhh............eeeeee....hhhhhhhhhhhhhhhhhh..hhhhh.eeeeee.hhhhh.hhhhhhhhhhhhhhhh...eeeeeeee.......eee..eeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4e5s C  -1 NAmLPTKLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLGGYNSNGLLKYLDYDLIRENPKFFCGYSDITALNNAIYTKTGLVTYSGPHFSSFGmEKGLEYTTDYFLQCLTSNKPIEVLPSETWSDDSWYIDQENRKFIKNEGYVSIHEGEATGDIIGGNmSTLNLLQGTSYmPNLKDKILFLEEDSLTGTSTLKTFDRYLHSLmQQQNFKHVKGIVIGKmQKGAECTIEDIQEmIASKPELAHIPIIANASFGHTTPIFTFPIGGRATIISSKEKTSITILTH 328
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138|      148       158       168       178       188       198      |208       218       228       238       248|      258      |268       278|      288       298       308       318       328
                              1-MSE                                                                                                                                   139-MSE                                                           205-MSE     217-MSE                         249-MSE         265-MSE       279-MSE                                             


Chain D from PDB  Type:PROTEIN  Length:329
                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee....hhhhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhh..eee...hhhhhh...hhhhhhhhhhhhhh...eee....ee..............ee....eeee.eeeeeeeeeeehhhhhhhh..........eeeeee....hhhhhhhhhhhhhhhhh...hhhhh.eeeee..hhhhh.hhhhhhhhhhhhhhhhhh.eeeee..........eee..eeeeeee..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e5s D   0 AmLPTKLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLGGYNSNGLLKYLDYDLIRENPKFFCGYSDITALNNAIYTKTGLVTYSGPHFSSFGmEKGLEYTTDYFLQCLTSNKPIEVLPSETWSDDSWYIDQENRKFIKNEGYVSIHEGEATGDIIGGNmSTLNLLQGTSYmPNLKDKILFLEEDSLTGTSTLKTFDRYLHSLmQQQNFKHVKGIVIGKmQKGAECTIEDIQEmIASKPELAHIPIIANASFGHTTPIFTFPIGGRATIISSKEKTSITILTH 328
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199     | 209       219       229       239       249       259     | 269       279       289       299       309       319         
                             1-MSE                                                                                                                                   139-MSE                                                           205-MSE     217-MSE                         249-MSE         265-MSE       279-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4E5S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4E5S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4E5S)

(-) Gene Ontology  (5, 5)

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        Q81JT5_BACAN | Q81JT5: 5fd8 5usd

(-) Related Entries Specified in the PDB File

3gjz
3tyx RELATED ID: CSGID-IDP91764 RELATED DB: TARGETTRACK