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(-) Description

Title :  CRYSTAL STRUCTURE OF MCCF-LIKE PROTEIN (BA_5613) IN COMPLEX WITH ASA (ALANYL SULFAMOYL ADENYLATES)
 
Authors :  B. Nocek, K. Severinov, A. Joachimiak, Center For Structural Genom Infectious Diseases (Csgid)
Date :  15 Dec 15  (Deposition) - 30 Dec 15  (Release) - 30 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Mccf, Asa, Serine Peptidase, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Nocek, K. Severinov, A. Joachimiak
Crystal Structure Of Mccf-Like Protein (Ba_5613) In Complex With Asa ( (Alanyl Sulfamoyl Adenylates)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LD-CARBOXYPEPTIDASE FAMILY PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'
    Expression System Taxid: 866768
    Gene: YOCD
    Organism Scientific: BACILLUS ANTHRACIS STR. AMES
    Organism Taxid: 198094
    Synonym: PEPTIDASE S66,PUTATIVE CARBOXYPEPTIDASE YOCD,UNCHARACTERIZED PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 16)

Asymmetric/Biological Unit (2, 16)
No.NameCountTypeFull Name
1A5A2Ligand/Ion'5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE
2MSE14Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:23 , LEU A:83 , GLY A:84 , GLY A:85 , TYR A:110 , HIS A:133 , TYR A:174 , ASP A:230 , HIS A:299 , HOH A:517 , HOH A:532 , HOH A:547 , HOH A:557 , HOH A:563 , HOH A:571 , HOH A:573 , HOH A:574binding site for residue A5A A 401
2AC2SOFTWAREILE B:23 , ASN B:28 , LEU B:83 , GLY B:84 , GLY B:85 , TYR B:110 , SER B:111 , HIS B:133 , TYR B:174 , HIS B:299 , HOH B:511 , HOH B:518 , HOH B:532 , HOH B:550 , HOH B:557 , HOH B:561 , HOH B:563 , HOH B:611binding site for residue A5A B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FD8)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Thr A:301 -Pro A:302
2Thr B:301 -Pro B:302

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FD8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FD8)

(-) Exons   (0, 0)

(no "Exon" information available for 5FD8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:330
                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............eeeee....hhhhhhhhhhhhhhhhhhhhh.eeee.............hhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhh..eeeehhhhhhhhhhhhhhhh..eee...hhhhhh...hhhhhhhhhhhhhh...eee....ee..............ee....eeee.eeeeeeeeeeehhhhhhhh..........eeeeee....hhhhhhhhhhhhhhhhhh..hhhhh.eeeee..hhhhh.hhhhhhhhhhhhhhhh...eeeee..........eee..eeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5fd8 A  -1 NAmLPTKLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLGGYNSNGLLKYLDYDLIRENPKFFCGYSDITALNNAIYTKTGLVTYSGPHFSSFGmEKGLEYTTDYFLQCLTSNKPIEVLPSETWSDDSWYIDQENRKFIKNEGYVSIHEGEATGDIIGGNmSTLNLLQGTSYmPNLKDKILFLEEDSLTGTSTLKTFDRYLHSLmQQQNFKHVKGIVIGKmQKGAECTIEDIQEmIASKPELAHIPIIANASFGHTTPIFTFPIGGRATIISSKEKTSITILTH 328
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138|      148       158       168       178       188       198      |208       218       228       238       248|      258      |268       278|      288       298       308       318       328
                              |                                                                                                                                       139-MSE                                                           205-MSE     217-MSE                         249-MSE         265-MSE       279-MSE                                             
                              1-MSE                                                                                                                                                                                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:330
                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............eeeee....hhhhhhhhhhhhhhhhhhhh..eeee.............hhhhhhhhhhhhhhh..eeeeee.....hhhhhh...hhhhhhhh..eee.hhhhhhhhhhhhhhhh..eee...hhhhhh...hhhhhhhhhhhhhh...eee....eee............eee....eeee.eeeeeeeeeeehhhhhh............eeeeee....hhhhhhhhhhhhhhhhhh..hhhhh.eeeee..hhhhh.hhhhhhhhhhhhhhhhhh.eeeee..........eee..eeeeee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5fd8 B  -1 NAmLPTKLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLGGYNSNGLLKYLDYDLIRENPKFFCGYSDITALNNAIYTKTGLVTYSGPHFSSFGmEKGLEYTTDYFLQCLTSNKPIEVLPSETWSDDSWYIDQENRKFIKNEGYVSIHEGEATGDIIGGNmSTLNLLQGTSYmPNLKDKILFLEEDSLTGTSTLKTFDRYLHSLmQQQNFKHVKGIVIGKmQKGAECTIEDIQEmIASKPELAHIPIIANASFGHTTPIFTFPIGGRATIISSKEKTSITILTH 328
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138|      148       158       168       178       188       198      |208       218       228       238       248|      258      |268       278|      288       298       308       318       328
                              1-MSE                                                                                                                                   139-MSE                                                           205-MSE     217-MSE                         249-MSE         265-MSE       279-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FD8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FD8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FD8)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        Q81JT5_BACAN | Q81JT5: 4e5s 5usd

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