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(-) Description

Title :  CALMODULIN AND NG PEPTIDE COMPLEX
 
Authors :  V. Kumar, J. Sivaraman
Date :  13 Mar 12  (Deposition) - 20 Mar 13  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Calmodulin (Cam), Intrinsically Unstructured Proteins, Protein Kinase C (Pkc), Neurogranin, Long Term Potentiation (Ltp), Long Term Depression (Ltd), Iq Motif, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Kumar, V. P. R. Chichili, L. Zhong, X. Tang, A. Velazquez-Campoy, F. -S. Sheu, J. Seetharaman, N. Z. Gerges, J. Sivaraman
Structural Basis For The Interaction Of Unstructured Neuron Specific Substrates Neuromodulin And Neurogranin With Calmodulin
Sci Rep V. 3 1392 2013
PubMed-ID: 23462742  |  Reference-DOI: 10.1038/SREP01392

(-) Compounds

Molecule 1 - CALMODULIN, LINKER, IQ MOTIF OF NEUROGRANIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGS21A
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Common: MOUSE, SYNTHETIC, MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: CHIMERA OF CALMODULIN, LINKER, IQ MOTIF OF NEUROGRANIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4E50)

(-) Sites  (0, 0)

(no "Site" information available for 4E50)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4E50)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4E50)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4E50)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4E50)

(-) Exons   (0, 0)

(no "Exon" information available for 4E50)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:160
 aligned with CALM1_MOUSE | P0DP26 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:169
                                                                                                                                                                                  149                
                                                                                                                                                                            147  148|                
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140      |  - ||      -         
          CALM1_MOUSE     1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT----AK----------------   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh......eee..hhhhhhhh......hhhhhh.---------.eeehhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh.....hhhhhhhhhh..........hhhhhh....hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e50 A   1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDM---------GTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTNAAAAKIQASFRGHMARKKIKS 176
                                    10        20        30        40        50 |       - |      70        80        90       100       110       120       130       140      |157       167         
                                                                              52        62                                                                                  147|                     
                                                                                                                                                                             155                     


Chain A from PDB  Type:PROTEIN  Length:160
 aligned with CALM2_MOUSE | P0DP27 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:169
                                                                                                                                                                                  149                
                                                                                                                                                                            147  148|                
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140      |  - ||      -         
          CALM2_MOUSE     1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT----AK----------------   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh......eee..hhhhhhhh......hhhhhh.---------.eeehhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh.....hhhhhhhhhh..........hhhhhh....hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e50 A   1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDM---------GTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTNAAAAKIQASFRGHMARKKIKS 176
                                    10        20        30        40        50 |       - |      70        80        90       100       110       120       130       140      |157       167         
                                                                              52        62                                                                                  147|                     
                                                                                                                                                                             155                     


Chain A from PDB  Type:PROTEIN  Length:160
 aligned with CALM3_MOUSE | P0DP28 from UniProtKB/Swiss-Prot  Length:149

    Alignment length:169
                                                                                                                                                                                  149                
                                                                                                                                                                            147  148|                
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140      |  - ||      -         
          CALM3_MOUSE     1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT----AK----------------   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh......eee..hhhhhhhh......hhhhhh.---------.eeehhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh.....hhhhhhhhhh..........hhhhhh....hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4e50 A   1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDM---------GTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTNAAAAKIQASFRGHMARKKIKS 176
                                    10        20        30        40        50 |       - |      70        80        90       100       110       120       130       140      |157       167         
                                                                              52        62                                                                                  147|                     
                                                                                                                                                                             155
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4E50)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4E50)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4E50)

(-) Gene Ontology  (75, 77)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (CALM2_MOUSE | P0DP27)

Chain A   (CALM1_MOUSE | P0DP26)

Chain A   (CALM3_MOUSE | P0DP28)

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(no "Cis Peptide Bonds" information available for 4e50)
 

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  4e50
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  CALM2_MOUSE | P0DP27
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  NEUG_MOUSE | P60761
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CALM1_MOUSE | P0DP26: 1aji 1cm1 1cm4 1deg 1k90 1k93 1lvc 1nkf 1qiv 1qiw 1sk6 1up5 2dfs 2ix7 3cln 3wfn 4e53 4hex 4zlk
        CALM2_MOUSE | P0DP27: 1aji 1cm1 1cm4 1deg 1k90 1k93 1lvc 1nkf 1qiv 1qiw 1sk6 1up5 2dfs 2ix7 3cln 3wfn 4e53 4hex 4zlk
        CALM3_MOUSE | P0DP28: 1aji 1cm1 1cm4 1deg 1k90 1k93 1lvc 1nkf 1qiv 1qiw 1sk6 1up5 2dfs 2ix7 3cln 3wfn 4e53 4hex 4zlk

(-) Related Entries Specified in the PDB File

4e53