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(-) Description

Title :  STRUCTURE OF THE 14-3-3/PMA2 COMPLEX STABILIZED BY A PYRAZOLE DERIVATIVE
 
Authors :  A. Richter, R. Rose, C. Hedberg, H. Waldmann, C. Ottmann
Date :  27 Feb 12  (Deposition) - 30 May 12  (Release) - 30 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.40
Chains :  Asym./Biol. Unit :  A,P
Keywords :  14-3-3 Fold, Pyrrolidinones, Protein Binding-Hydrolase Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Richter, R. Rose, C. Hedberg, H. Waldmann, C. Ottmann
An Optimised Small-Molecule Stabiliser Of The 14-3-3-Pma2 Protein-Protein Interaction.
Chemistry V. 18 6520 2012
PubMed-ID: 22467351  |  Reference-DOI: 10.1002/CHEM.201103761

(-) Compounds

Molecule 1 - 14-3-3-LIKE PROTEIN E
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 1-238
    Organism Common: AMERICAN TOBACCO,TOBACCO
    Organism Scientific: NICOTIANA TABACUM
    Organism Taxid: 4097
 
Molecule 2 - N.PLUMBAGINIFOLIA H+-TRANSLOCATING ATPASE MRNA
    Chains: P
    EC Number: 3.6.3.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 926-956
    Mutation: YES
    Organism Common: LEADWORT-LEAVED TOBACCO
    Organism Scientific: NICOTIANA PLUMBAGINIFOLIA
    Organism Taxid: 4092

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
10MT1Ligand/Ion4-[(4R)-4-(4-NITROPHENYL)-6-OXIDANYLIDENE-3-PHENYL-1,4-DIHYDROPYRROLO[3,4-C]PYRAZOL-5-YL]BENZOIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:46 , ASN A:47 , VAL A:51 , LYS A:54 , PHE A:124 , LYS A:127 , PRO A:172 , ILE A:173 , GLY A:176 , ASP A:220BINDING SITE FOR RESIDUE 0MT A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4DX0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4DX0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4DX0)

(-) PROSITE Motifs  (2, 2)

Asymmetric/Biological Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
11433_1PS00796 14-3-3 proteins signature 1.1433E_TOBAC46-56  1A:46-56
21433_2PS00797 14-3-3 proteins signature 2.1433E_TOBAC218-237  1A:218-237

(-) Exons   (0, 0)

(no "Exon" information available for 4DX0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:229
 aligned with 1433E_TOBAC | O49997 from UniProtKB/Swiss-Prot  Length:272

    Alignment length:235
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233     
          1433E_TOBAC     4 STREENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSSIKEYRGKIEAELSKICDGILNLLESHLIPVASTAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSSDRACNLAKQAFDDAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSD 238
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.------.hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------1433_1     -----------------------------------------------------------------------------------------------------------------------------------------------------------------1433_2              - PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dx0 A   4 STREENVYMAKLAEQAERYEEMVEFMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSSIKEYRGKIEAELSKICDGILNLLESHLIPVASTAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSSDRACNLAKQAFDDAIAELD------YKDSTLIMQLLRDNLTLWTSD 238
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       | -    |  223       233     
                                                                                                                                                                                                                                         211    218                    


Chain P from PDB  Type:PROTEIN  Length:31
 aligned with Q42932_NICPL | Q42932 from UniProtKB/TrEMBL  Length:956

    Alignment length:31
                                   935       945       955 
         Q42932_NICPL   926 QRELHTLKGHVESVVKLKGLDIETIQQSYTV 956
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                 4dx0 P 926 RRELHTLKGHVEAVVKLKGLDIETIQQSYDI 956
                                   935       945       955
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4DX0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4DX0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4DX0)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (1433E_TOBAC | O49997)
molecular function
    GO:0019904    protein domain specific binding    Interacting selectively and non-covalently with a specific domain of a protein.

Chain P   (Q42932_NICPL | Q42932)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0008553    hydrogen-exporting ATPase activity, phosphorylative mechanism    Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) -> ADP + phosphate + H+(out). These transporters use a phosphorylative mechanism, which have a phosphorylated intermediate state during the ion transport cycle.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0006754    ATP biosynthetic process    The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:1902600    hydrogen ion transmembrane transport    The directed movement of hydrogen ion (proton) across a membrane.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015992    proton transport    The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q42932_NICPL | Q42932: 3m50 3m51

(-) Related Entries Specified in the PDB File

3m50 SAME COMPLEX STABILIZED BY EPIBESTATIN
3m51 SAME COMPLEX STABILIZED BY PYRROLIDONE1