3M51 - JenaLib

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Biol. Unit 1 - sites (Jmol Viewer)

Title :   STRUCTURE OF THE 14-3-3/PMA2 COMPLEX STABILIZED BY PYRROLIDONE1

Authors :   C. Ottmann, R. Rose, H. Waldmann

Date :   12 Mar 10 (Deposition) - 26 May 10 (Release) - 05 Mar 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.25

Chains :   Asym. Unit : A,P
Biol. Unit 1: A,P  (2x)

Keywords :   All Helical, Protein-Protein Complex, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Rose, S. Erdmann, S. Bovens, A. Wolf, M. Rose, S. Hennig, H. Waldmann C. Ottmann
Identification And Structure Of Small-Molecule Stabilizers Of 14-3-3 Protein-Protein Interactions
Angew. Chem. Int. Ed. Engl. V. 49 4129 2010
PubMed-ID: 20437433 | Reference-DOI: 10.1002/ANIE.200907203

Molecule 1 - 14-3-3-LIKE PROTEIN C
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PPROEX HTB
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 1-240
	Organism Common	:	TOBACCO
	Organism Scientific	:	NICOTIANA TABACUM
	Organism Taxid	:	4097
	Synonym	:	14-3-3-LIKE PROTEIN B

Molecule 2 - N.PLUMBAGINIFOLIA H+-TRANSLOCATING ATPASE MRNA
	Chains	:	P
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PTYB12
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	C-TERMINAL FRAGMENT
	Mutation	:	YES
	Organism Common	:	LEADWORT-LEAVED TOBACCO
	Organism Scientific	:	NICOTIANA PLUMBAGINIFOLIA
	Organism Taxid	:	4092

		1	2
Asymmetric Unit	:	A	P
Biological Unit 1 (2x)	:	A	P

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 1)

No.	Name	Count	Type	Full Name
1	YR1	1	Ligand/Ion	2-HYDROXY-5-[(5S)-3-HYDROXY-5-(4-NITROPHENYL)-2-OXO-4-(PHENYLCARBONYL)-2,5-DIHYDRO-1H-PYRROL-1-YL]BENZOICACID

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	YR1	2	Ligand/Ion	2-HYDROXY-5-[(5S)-3-HYDROXY-5-(4-NITROPHENYL)-2-OXO-4-(PHENYLCARBONYL)-2,5-DIHYDRO-1H-PYRROL-1-YL]BENZOICACID

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:48 , ASN A:49 , LYS A:56 , ASP A:122 , LYS A:129 , PRO A:174 , ILE A:175 , ASP A:222 , HOH A:247 , HOH A:248 , HIS P:930 , ILE P:956	BINDING SITE FOR RESIDUE YR1 A 241

(no "SS Bond" information available for 3M51)

(no "Cis Peptide Bond" information available for 3M51)

(no "SAP(SNP)/Variant" information available for 3M51)

Asymmetric Unit (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	1433_1	PS00796	14-3-3 proteins signature 1.	1433C_TOBAC	48-58	1	A:48-58
2	1433_2	PS00797	14-3-3 proteins signature 2.	1433C_TOBAC	220-239	1	A:220-239

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	1433_1	PS00796	14-3-3 proteins signature 1.	1433C_TOBAC	48-58	2	A:48-58
2	1433_2	PS00797	14-3-3 proteins signature 2.	1433C_TOBAC	220-239	2	A:220-239

(no "Exon" information available for 3M51)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:219
 aligned with 1433C_TOBAC | P93343 from UniProtKB/Swiss-Prot  Length:260

    Alignment length:233
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237   
          1433C_TOBAC     8 REENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEHVNSIREYRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSD 240
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains 14-3-3-3m51A01 A:8-240                                                                                                                                                                                                                    Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.--...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh...------.hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------1433_1     -----------------------------------------------------------------------------------------------------------------------------------------------------------------1433_2              - PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m51 A   8 REENVYMAKLAEQAERYEEMVEFMEKVSNSL--EELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEE------HVNSIREYRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELD------YKDSTLIMQLLRDNLTLWTSD 240
                                    17        27        37|  |    47        57        67        77      | 87        97       107       117       127       137       147       157       167       177       187       197       207     |   -  |    227       237   
                                                         38 41                                  77     84                                                                                                                              213    220

Chain P from PDB  Type:PROTEIN  Length:31
 aligned with Q42932_NICPL | Q42932 from UniProtKB/TrEMBL  Length:956

    Alignment length:31
                                   935       945       955 
         Q42932_NICPL   926 QRELHTLKGHVESVVKLKGLDIETIQQSYTV 956
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                 3m51 P 926 RRELHTLKGHVEAVVKLKGLDIETIQQSYDI 956
                                   935       945       955

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3M51)

(no "CATH Domain" information available for 3M51)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: 14-3-3] (18)

Family: 14-3-3 (18)

Nicotiana tabacum (Common tobacco) (7)

14-3-3-3m51A01

A:8-240

Asymmetric Unit(hide GO term definitions)

Chain A (1433C_TOBAC | P93343)

molecular function
	GO:0019904		protein domain specific binding		Interacting selectively and non-covalently with a specific domain of a protein.

Chain P (Q42932_NICPL | Q42932)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0016887	ATPase activity	Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
	GO:0008553	hydrogen-exporting ATPase activity, phosphorylative mechanism	Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) -> ADP + phosphate + H+(out). These transporters use a phosphorylative mechanism, which have a phosphorylated intermediate state during the ion transport cycle.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0006754	ATP biosynthetic process	The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:1902600	hydrogen ion transmembrane transport	The directed movement of hydrogen ion (proton) across a membrane.
	GO:0006811	ion transport	The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0015992	proton transport	The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Asymmetric Unit
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	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3m51)

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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	3m51
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
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Access by UniProt ID/Accession number
	1433C_TOBAC \| P93343
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		Protein-protein Interaction	:	DIP
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	Q42932_NICPL \| Q42932
		Comparative Protein Structure Models	:	ModBase
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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
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	Q42932_NICPL \| Q42932
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	1433C_TOBAC \| P93343	:	1o9c 1o9d 1o9e 1o9f 2o98 3e6y 3m50
UniProtKB/TrEMBL
	Q42932_NICPL \| Q42932	:	3m50 4dx0

1o9f	STRUCTURAL VIEW OF A FUNGAL TOXIN ACTING ON A 14-3-3 REGULATORY COMPLEX
2o98	STRUCTURE OF THE 14-3-3 / H+-ATPASE PLANT COMPLEX
3m50	STRUCTURE OF THE 14-3-3/PMA2 COMPLEX WITH EPIBESTATIN

Description

Compounds

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Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 2)

Exons (0, 0)

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SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (14, 14)

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