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(-) Description

Title :  CRYSTAL STRUCTURE OF CIRCADIAN CLOCK PROTEIN KAIC E318A MUTANT
 
Authors :  M. Egli, T. Mori, R. Pattanayek, Y. Xu, X. Qin, C. H. Johnson
Date :  21 Feb 12  (Deposition) - 14 Mar 12  (Release) - 14 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.29
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Kaia, Kaib, Atp-Binding, Biological Rhythms, Dna-Binding, Metal- Binding, Nucleotide-Binding, Phosphoprotein, Repressor, Serine/Threonine-Protein Kinase, Transcription Regulation, Auto- Kinase, Phosphorylation, Circadian Clock Protein, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Egli, T. Mori, R. Pattanayek, Y. Xu, X. Qin, C. H. Johnson
Dephosphorylation Of The Core Clock Protein Kaic In The Cyanobacterial Kaiabc Circadian Oscillator Proceeds Via An Atp Synthase Mechanism.
Biochemistry V. 51 1547 2012
PubMed-ID: 22304631  |  Reference-DOI: 10.1021/BI201525N

(-) Compounds

Molecule 1 - CIRCADIAN CLOCK PROTEIN KINASE KAIC
    Chains: A, B, C, E, F
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: KAIC, SEE0011, SYNPCC7942_1216
    Mutation: YES
    Organism Scientific: SYNECHOCOCCUS ELONGATUS
    Organism Taxid: 1140
    Strain: PCC 7942
 
Molecule 2 - CIRCADIAN CLOCK PROTEIN KINASE KAIC
    Chains: D
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: KAIC, SEE0011, SYNPCC7942_1216
    Mutation: YES
    Organism Scientific: SYNECHOCOCCUS ELONGATUS
    Organism Taxid: 1140
    Strain: PCC 7942

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 30)

Asymmetric/Biological Unit (4, 30)
No.NameCountTypeFull Name
1ATP12Ligand/IonADENOSINE-5'-TRIPHOSPHATE
2MG12Ligand/IonMAGNESIUM ION
3PO41Ligand/IonPHOSPHATE ION
4TPO5Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (25, 25)

Asymmetric Unit (25, 25)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:295 , GLU A:319 , ATP A:802 , HOH A:901BINDING SITE FOR RESIDUE MG A 801
02AC2SOFTWARETHR A:290 , GLY A:291 , THR A:292 , GLY A:293 , LYS A:294 , THR A:295 , LEU A:296 , TRP A:331 , THR A:415 , ARG A:451 , ILE A:472 , SER A:473 , ASP A:474 , MG A:801 , HOH A:901 , TPO B:432 , LYS B:457 , MET B:458 , ARG B:459 , GLY B:460 , SER B:461 , TRP B:462 , HIS B:463BINDING SITE FOR RESIDUE ATP A 802
03AC3SOFTWAREGLY A:49 , THR A:50 , GLY A:51 , LYS A:52 , THR A:53 , LEU A:54 , SER A:89 , PHE A:90 , ARG A:218 , ILE A:239 , THR A:240 , ASP A:241 , MG A:804 , LEU B:223 , LYS B:224 , LEU B:225 , ARG B:226 , GLY B:227 , THR B:228 , SER B:229 , HIS B:230 , LYS B:232BINDING SITE FOR RESIDUE ATP A 803
04AC4SOFTWARETHR A:53 , ASP A:145 , ATP A:803BINDING SITE FOR RESIDUE MG A 804
05AC5SOFTWARETHR B:295 , ATP B:602 , HOH B:710 , HOH B:711 , ARG C:459BINDING SITE FOR RESIDUE MG B 601
06AC6SOFTWARETHR B:290 , GLY B:291 , THR B:292 , GLY B:293 , LYS B:294 , THR B:295 , LEU B:296 , TRP B:331 , THR B:415 , ARG B:451 , ILE B:472 , MG B:601 , HOH B:710 , TPO C:432 , LYS C:457 , MET C:458 , ARG C:459 , SER C:461 , TRP C:462 , HIS C:463BINDING SITE FOR RESIDUE ATP B 602
07AC7SOFTWARESER B:48 , GLY B:49 , THR B:50 , GLY B:51 , LYS B:52 , THR B:53 , LEU B:54 , SER B:89 , PHE B:90 , ARG B:218 , ILE B:239 , THR B:240 , ASP B:241 , MG B:604 , HOH B:701 , LEU C:223 , LYS C:224 , LEU C:225 , ARG C:226 , GLY C:227 , THR C:228 , SER C:229 , HIS C:230BINDING SITE FOR RESIDUE ATP B 603
08AC8SOFTWARELYS B:52 , THR B:53 , ASP B:145 , ATP B:603 , HOH B:701BINDING SITE FOR RESIDUE MG B 604
09AC9SOFTWARETHR C:295 , ATP C:602 , HOH C:706BINDING SITE FOR RESIDUE MG C 601
10BC1SOFTWARETHR C:290 , GLY C:291 , THR C:292 , GLY C:293 , LYS C:294 , THR C:295 , LEU C:296 , SER C:330 , TRP C:331 , ARG C:451 , ILE C:472 , ASP C:474 , MG C:601 , LYS D:457 , MET D:458 , ARG D:459 , SER D:461 , TRP D:462 , HIS D:463BINDING SITE FOR RESIDUE ATP C 602
11BC2SOFTWARESER C:48 , GLY C:49 , THR C:50 , GLY C:51 , LYS C:52 , THR C:53 , LEU C:54 , SER C:89 , PHE C:90 , ARG C:218 , ILE C:239 , THR C:240 , ASP C:241 , MG C:604 , LEU D:223 , LYS D:224 , LEU D:225 , ARG D:226 , GLY D:227 , THR D:228 , SER D:229 , HIS D:230BINDING SITE FOR RESIDUE ATP C 603
12BC3SOFTWARETHR C:53 , GLU C:78 , ASP C:145 , ATP C:603 , ARG D:226BINDING SITE FOR RESIDUE MG C 604
13BC4SOFTWARETHR C:47 , GLU C:187 , ARG C:216 , HOH C:705 , ILE D:191BINDING SITE FOR RESIDUE PO4 C 605
14BC5SOFTWARETHR D:295 , GLU D:319 , ATP D:602 , HOH D:708BINDING SITE FOR RESIDUE MG D 601
15BC6SOFTWARETHR D:290 , GLY D:291 , GLY D:293 , LYS D:294 , THR D:295 , LEU D:296 , TRP D:331 , ARG D:451 , ILE D:472 , ASP D:474 , MG D:601 , HOH D:708 , LYS E:457 , MET E:458 , ARG E:459 , GLY E:460 , SER E:461 , TRP E:462 , HIS E:463BINDING SITE FOR RESIDUE ATP D 602
16BC7SOFTWAREGLY D:49 , GLY D:51 , LYS D:52 , THR D:53 , LEU D:54 , SER D:89 , PHE D:90 , ARG D:218 , ILE D:239 , ASP D:241 , MG D:604 , HOH D:711 , HOH D:712 , HOH D:714 , LYS E:224 , LEU E:225 , ARG E:226 , THR E:228 , SER E:229 , HIS E:230BINDING SITE FOR RESIDUE ATP D 603
17BC8SOFTWARELYS D:52 , THR D:53 , ASP D:145 , ATP D:603 , HOH D:711 , HOH D:714BINDING SITE FOR RESIDUE MG D 604
18BC9SOFTWARETHR E:295 , ATP E:602 , HOH E:715BINDING SITE FOR RESIDUE MG E 601
19CC1SOFTWARETHR E:290 , GLY E:291 , THR E:292 , GLY E:293 , LYS E:294 , THR E:295 , LEU E:296 , SER E:330 , TRP E:331 , ILE E:472 , SER E:473 , MG E:601 , LYS F:457 , MET F:458 , ARG F:459 , SER F:461 , TRP F:462 , HIS F:463 , LYS F:465BINDING SITE FOR RESIDUE ATP E 602
20CC2SOFTWAREGLY E:49 , THR E:50 , GLY E:51 , LYS E:52 , THR E:53 , LEU E:54 , GLU E:78 , SER E:89 , PHE E:90 , ILE E:239 , ASP E:241 , MG E:604 , HOH E:710 , LEU F:223 , LYS F:224 , LEU F:225 , ARG F:226 , THR F:228 , SER F:229 , HIS F:230 , LYS F:232BINDING SITE FOR RESIDUE ATP E 603
21CC3SOFTWARETHR E:53 , ASP E:145 , ATP E:603BINDING SITE FOR RESIDUE MG E 604
22CC4SOFTWAREARG A:459 , THR F:295 , GLU F:319 , ATP F:602BINDING SITE FOR RESIDUE MG F 601
23CC5SOFTWARELYS A:457 , MET A:458 , ARG A:459 , GLY A:460 , SER A:461 , TRP A:462 , HIS A:463 , LYS A:465 , THR F:290 , GLY F:291 , THR F:292 , GLY F:293 , LYS F:294 , THR F:295 , LEU F:296 , TRP F:331 , ARG F:451 , ILE F:472 , SER F:473 , ASP F:474 , MG F:601BINDING SITE FOR RESIDUE ATP F 602
24CC6SOFTWARELEU A:223 , LYS A:224 , ARG A:226 , THR A:228 , SER A:229 , HIS A:230 , LYS A:232 , HOH A:907 , GLY F:49 , THR F:50 , GLY F:51 , LYS F:52 , THR F:53 , LEU F:54 , SER F:89 , PHE F:90 , ILE F:239 , THR F:240 , ASP F:241 , MG F:604 , HOH F:701 , HOH F:704BINDING SITE FOR RESIDUE ATP F 603
25CC7SOFTWARETHR F:53 , ASP F:145 , ATP F:603 , HOH F:701BINDING SITE FOR RESIDUE MG F 604

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4DUG)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1Lys B:502 -Ser B:503
2Ser B:506 -Arg B:507
3Thr D:498 -Val D:499
4Val D:499 -Asp D:500
5Asp D:500 -Glu D:501
6Glu D:501 -Lys D:502
7Val D:509 -Arg D:510
8Arg D:510 -Gly D:511
9Gly D:511 -Val D:512
10Val D:512 -Gln D:513
11Leu E:505 -Ser E:506
12Val E:512 -Gln E:513

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4DUG)

(-) PROSITE Motifs  (1, 12)

Asymmetric/Biological Unit (1, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1KAICPS51146 KaiC domain profile.KAIC_SYNE719-260
 
 
 
 
 
261-493
 
 
 
 
 		  12A:19-260
B:19-260
C:19-260
D:19-260
E:19-260
F:19-260
A:261-493
B:261-493
C:261-493
D:261-493
E:261-493
F:261-493

(-) Exons   (0, 0)

(no "Exon" information available for 4DUG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:506
 aligned with KAIC_SYNE7 | Q79PF4 from UniProtKB/Swiss-Prot  Length:519

    Alignment length:506
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513      
           KAIC_SYNE7    14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKGPDIKDSFRNFERIISGSPTRITVDEKSELSRIVRGVQEKGPES 519
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee.....hhhhhh...ee...eeeeeee...hhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhh.....hhhhhhh..eeeee..............hhhhhhhhhhhhhhhhh..eeee...hhhhh...hhhhhhhhhhhhhhhhhhhh.eeeeeeee...........hhhhhh.eeeeeeee......eeeeeeeee........eeeeeee..eeee...............ee...hhhhhhh....ee...eeeeee....hhhhhhhhhhhhhhhh...eeeee...hhhhhhhh.......hhhhhhh..eee........hhhhhhhhhhhhhhh....eeeeehhhhh....hhhhhhhhhhhhhhhhhhh..eeeeeee....................eeeeeeeeee..eeeeeeeeeee.........eeeeee..eeeee.....ee.......ee...........hhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----KAIC  PDB: A:19-260 UniProt: 19-260                                                                                                                                                                                                               KAIC  PDB: A:261-493 UniProt: 261-493                                                                                                                                                                                                    -------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dug A  14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYAESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHIStITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKGPDIKDSFRNFERIISGSPTRITVDEKSELSRIVRGVQEKGPES 519
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513      
                                                                                                                                                                                                                                                                                                                                                                                                                                                            432-TPO                                                                                   


Chain B from PDB  Type:PROTEIN  Length:498
 aligned with KAIC_SYNE7 | Q79PF4 from UniProtKB/Swiss-Prot  Length:519

    Alignment length:498
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503        
           KAIC_SYNE7    14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKGPDIKDSFRNFERIISGSPTRITVDEKSELSRIVRG 511
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............hhhhhh.........eeeee....hhhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhh....hhhhhhhh..eee.............hhhhhhhhhhhhhhhhhhh...eeee...........hhhhhhhhhhhhhhhhhhhh.eeeee..............hhhhhh.eeeeeeee......eeeeeeee.........eeeeee....eee...............ee...hhhhhhhhh..ee...eeeeeee...hhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhh...hhhhhhhh..eee...hhhhhhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhhhhhhhhh..eeeeeeee...................eeeeeeeeee..eeeeeeeeeee.........eeeeee..eeeeeee............................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----KAIC  PDB: B:19-260 UniProt: 19-260                                                                                                                                                                                                               KAIC  PDB: B:261-493 UniProt: 261-493                                                                                                                                                                                                    ------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4dug B  14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYAESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHIStITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKGPDIKDSFRNFERIISGSPTRITVDEKSELSRIVRG 511
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503        
                                                                                                                                                                                                                                                                                                                                                                                                                                                            432-TPO                                                                           


Chain C from PDB  Type:PROTEIN  Length:497
 aligned with KAIC_SYNE7 | Q79PF4 from UniProtKB/Swiss-Prot  Length:519

    Alignment length:497
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       
           KAIC_SYNE7    14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKGPDIKDSFRNFERIISGSPTRITVDEKSELSRIVR 510
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee.....hhhhhh...ee...eeeeee....hhhhhhhhhhhhhhhhh...eeeee...hhhhhhhh.......hhhhhh...eeeee..................hhhhhhhhhhhhh..eeeee..........hhhhhhhhhhhhhhhhhhhh.eeeee..............hhhhhh.eeeeeeee......eeeeeeeee........eee..ee..ee.................ee...hhhhhhhhh..ee...eeeeee....hhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhh...hhhhhhhh..eee........hhhhhhhhhhhhhhh....eeeee.hhhhhh..hhhhhhhhhhhhhhhhhh...eeeeeee....................eeeeeeeeee..eeeeeeeeeee.........eeeeee..eeee......ee.......ee.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----KAIC  PDB: C:19-260 UniProt: 19-260                                                                                                                                                                                                               KAIC  PDB: C:261-493 UniProt: 261-493                                                                                                                                                                                                    ----------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dug C  14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYAESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHIStITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKGPDIKDSFRNFERIISGSPTRITVDEKSELSRIVR 510
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       
                                                                                                                                                                                                                                                                                                                                                                                                                                                            432-TPO                                                                          


Chain D from PDB  Type:PROTEIN  Length:500
 aligned with KAIC_SYNE7 | Q79PF4 from UniProtKB/Swiss-Prot  Length:519

    Alignment length:500
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513
           KAIC_SYNE7    14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKGPDIKDSFRNFERIISGSPTRITVDEKSELSRIVRGVQ 513
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee.....hhhhhh...ee...eeeeee....hhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhh.hhhhhhhh..eeeee.............hhhhhhhhhhhhhhhhhh..eeee..hhhhhh....hhhhhhhhhhhhhhhhhhh.eeeeeee............hhhhhh.eeeeeeee......eeeeeeeee........eeeeeee..eeee...............ee...hhhhhhhh...ee...eeeeee.....hhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhh.hhhhhhhh..eee...hhhhhhhhhhhhhhhhhhhhhh..eeee..........hhhhhhhhhhhhhhhhhhh..eeeeeee....................eeeeeeeee....eeeeeeeeee........eeeeeee..eeeeeee............................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----KAIC  PDB: D:19-260 UniProt: 19-260                                                                                                                                                                                                               KAIC  PDB: D:261-493 UniProt: 261-493                                                                                                                                                                                                    -------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dug D  14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYAESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKGPDIKDSFRNFERIISGSPTRITVDEKSELSRIVRGVQ 513
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513


Chain E from PDB  Type:PROTEIN  Length:501
 aligned with KAIC_SYNE7 | Q79PF4 from UniProtKB/Swiss-Prot  Length:519

    Alignment length:501
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513 
           KAIC_SYNE7    14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKGPDIKDSFRNFERIISGSPTRITVDEKSELSRIVRGVQE 514
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee.....hhhhhh...ee...eeeeee....hhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhh..hhhhhhhh..eeeee............hhhhhhhhhhhhhhhhhhh..eeee..hhhhhh....hhhhhhhhhhhhhhhhhhh.eeeeeee............hhhhhh.eeeeeeee......eeeeeeeee.........eeeeee..eeee...............ee...hhhhhhhh...ee...eeeeee....hhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhh....hhhhhhh..eee...hhhhhhhhhhhhhhhhhhhhh...eeeee.hhhhhh..hhhhhhhhhhhhhhhhhhh..eeeeeee....................eeee..eee....eee..eeee............ee......ee......ee.......ee.................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----KAIC  PDB: E:19-260 UniProt: 19-260                                                                                                                                                                                                               KAIC  PDB: E:261-493 UniProt: 261-493                                                                                                                                                                                                    --------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dug E  14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYAESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHIStITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKGPDIKDSFRNFERIISGSPTRITVDEKSELSRIVRGVQE 514
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513 
                                                                                                                                                                                                                                                                                                                                                                                                                                                            432-TPO                                                                              


Chain F from PDB  Type:PROTEIN  Length:506
 aligned with KAIC_SYNE7 | Q79PF4 from UniProtKB/Swiss-Prot  Length:519

    Alignment length:506
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513      
           KAIC_SYNE7    14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKGPDIKDSFRNFERIISGSPTRITVDEKSELSRIVRGVQEKGPES 519
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee.....hhhhhh...ee....eeeee....hhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhh.hhhhhhhh..eeeee............hhhhhhhhhhhhhhhhhhh..eeee.hhhhhh......hhhhhhhhhhhhhhhhhh.eeeeeee............hhhhhh.eeeeeeee......eeeeeeeee.........eeeeee..eeee...............ee...hhhhhhh....ee...eeeee.....hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhh.hhhhhhhh..eee...hhhhhhhhhhhhhhhhhhhh....eeeeehhhhh....hhhhhhhhhhhhhhhhhhh..eeeee................hhhhh.eeeeeeeeee..eeeeeeeeeee..........eeeee..eeee......ee.......ee....................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----KAIC  PDB: F:19-260 UniProt: 19-260                                                                                                                                                                                                               KAIC  PDB: F:261-493 UniProt: 261-493                                                                                                                                                                                                    -------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4dug F  14 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYAESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHIStITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKGPDIKDSFRNFERIISGSPTRITVDEKSELSRIVRGVQEKGPES 519
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513      
                                                                                                                                                                                                                                                                                                                                                                                                                                                            432-TPO
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4DUG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4DUG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4DUG)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (KAIC_SYNE7 | Q79PF4)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
    GO:0004712    protein serine/threonine/tyrosine kinase activity    Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; ATP + a protein threonine = ADP + protein threonine phosphate; and ATP + a protein tyrosine = ADP + protein tyrosine phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0007623    circadian rhythm    Any biological process in an organism that recurs with a regularity of approximately 24 hours.
    GO:0009649    entrainment of circadian clock    The synchronization of a circadian rhythm to environmental time cues such as light.
    GO:0042754    negative regulation of circadian rhythm    Any process that stops, prevents, or reduces the frequency, rate or extent of a circadian rhythm behavior.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:0042752    regulation of circadian rhythm    Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours.
    GO:0070297    regulation of phosphorelay signal transduction system    Any process that modulates the frequency, rate or extent of signal transduction via a phosphorelay signal transduction system.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0048511    rhythmic process    Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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  2.7.11.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KAIC_SYNE7 | Q79PF4: 1tf7 1u9i 2gbl 3dvl 3jzm 3k09 3k0a 3k0c 3k0e 3k0f 3s1a 4ijm 4tl6 4tl7 4tl8 4tl9 4tla 4tlb 4tlc 4tld 4tle 5c5e 5n8y

(-) Related Entries Specified in the PDB File

3dvl CRYSTAL STRUCTURE OF FULL LENGTH CIRCADIAN CLOCK PROTEIN KAIC WITH CORRECT GEOMETRY AT PHOSPHORYLATION SITES