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4DUG
Asym. Unit
Info
Asym.Unit (503 KB)
Biol.Unit 1 (493 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CIRCADIAN CLOCK PROTEIN KAIC E318A MUTANT
Authors
:
M. Egli, T. Mori, R. Pattanayek, Y. Xu, X. Qin, C. H. Johnson
Date
:
21 Feb 12 (Deposition) - 14 Mar 12 (Release) - 14 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.29
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Kaia, Kaib, Atp-Binding, Biological Rhythms, Dna-Binding, Metal- Binding, Nucleotide-Binding, Phosphoprotein, Repressor, Serine/Threonine-Protein Kinase, Transcription Regulation, Auto- Kinase, Phosphorylation, Circadian Clock Protein, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Egli, T. Mori, R. Pattanayek, Y. Xu, X. Qin, C. H. Johnson
Dephosphorylation Of The Core Clock Protein Kaic In The Cyanobacterial Kaiabc Circadian Oscillator Proceeds Via An Atp Synthase Mechanism.
Biochemistry V. 51 1547 2012
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Hetero Components
(4, 30)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
1c: ADENOSINE-5'-TRIPHOSPHATE (ATPc)
1d: ADENOSINE-5'-TRIPHOSPHATE (ATPd)
1e: ADENOSINE-5'-TRIPHOSPHATE (ATPe)
1f: ADENOSINE-5'-TRIPHOSPHATE (ATPf)
1g: ADENOSINE-5'-TRIPHOSPHATE (ATPg)
1h: ADENOSINE-5'-TRIPHOSPHATE (ATPh)
1i: ADENOSINE-5'-TRIPHOSPHATE (ATPi)
1j: ADENOSINE-5'-TRIPHOSPHATE (ATPj)
1k: ADENOSINE-5'-TRIPHOSPHATE (ATPk)
1l: ADENOSINE-5'-TRIPHOSPHATE (ATPl)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
2k: MAGNESIUM ION (MGk)
2l: MAGNESIUM ION (MGl)
3a: PHOSPHATE ION (PO4a)
4a: PHOSPHOTHREONINE (TPOa)
4b: PHOSPHOTHREONINE (TPOb)
4c: PHOSPHOTHREONINE (TPOc)
4d: PHOSPHOTHREONINE (TPOd)
4e: PHOSPHOTHREONINE (TPOe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
12
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
MG
12
Ligand/Ion
MAGNESIUM ION
3
PO4
1
Ligand/Ion
PHOSPHATE ION
4
TPO
5
Mod. Amino Acid
PHOSPHOTHREONINE
[
close Hetero Component info
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Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:295 , GLU A:319 , ATP A:802 , HOH A:901
BINDING SITE FOR RESIDUE MG A 801
02
AC2
SOFTWARE
THR A:290 , GLY A:291 , THR A:292 , GLY A:293 , LYS A:294 , THR A:295 , LEU A:296 , TRP A:331 , THR A:415 , ARG A:451 , ILE A:472 , SER A:473 , ASP A:474 , MG A:801 , HOH A:901 , TPO B:432 , LYS B:457 , MET B:458 , ARG B:459 , GLY B:460 , SER B:461 , TRP B:462 , HIS B:463
BINDING SITE FOR RESIDUE ATP A 802
03
AC3
SOFTWARE
GLY A:49 , THR A:50 , GLY A:51 , LYS A:52 , THR A:53 , LEU A:54 , SER A:89 , PHE A:90 , ARG A:218 , ILE A:239 , THR A:240 , ASP A:241 , MG A:804 , LEU B:223 , LYS B:224 , LEU B:225 , ARG B:226 , GLY B:227 , THR B:228 , SER B:229 , HIS B:230 , LYS B:232
BINDING SITE FOR RESIDUE ATP A 803
04
AC4
SOFTWARE
THR A:53 , ASP A:145 , ATP A:803
BINDING SITE FOR RESIDUE MG A 804
05
AC5
SOFTWARE
THR B:295 , ATP B:602 , HOH B:710 , HOH B:711 , ARG C:459
BINDING SITE FOR RESIDUE MG B 601
06
AC6
SOFTWARE
THR B:290 , GLY B:291 , THR B:292 , GLY B:293 , LYS B:294 , THR B:295 , LEU B:296 , TRP B:331 , THR B:415 , ARG B:451 , ILE B:472 , MG B:601 , HOH B:710 , TPO C:432 , LYS C:457 , MET C:458 , ARG C:459 , SER C:461 , TRP C:462 , HIS C:463
BINDING SITE FOR RESIDUE ATP B 602
07
AC7
SOFTWARE
SER B:48 , GLY B:49 , THR B:50 , GLY B:51 , LYS B:52 , THR B:53 , LEU B:54 , SER B:89 , PHE B:90 , ARG B:218 , ILE B:239 , THR B:240 , ASP B:241 , MG B:604 , HOH B:701 , LEU C:223 , LYS C:224 , LEU C:225 , ARG C:226 , GLY C:227 , THR C:228 , SER C:229 , HIS C:230
BINDING SITE FOR RESIDUE ATP B 603
08
AC8
SOFTWARE
LYS B:52 , THR B:53 , ASP B:145 , ATP B:603 , HOH B:701
BINDING SITE FOR RESIDUE MG B 604
09
AC9
SOFTWARE
THR C:295 , ATP C:602 , HOH C:706
BINDING SITE FOR RESIDUE MG C 601
10
BC1
SOFTWARE
THR C:290 , GLY C:291 , THR C:292 , GLY C:293 , LYS C:294 , THR C:295 , LEU C:296 , SER C:330 , TRP C:331 , ARG C:451 , ILE C:472 , ASP C:474 , MG C:601 , LYS D:457 , MET D:458 , ARG D:459 , SER D:461 , TRP D:462 , HIS D:463
BINDING SITE FOR RESIDUE ATP C 602
11
BC2
SOFTWARE
SER C:48 , GLY C:49 , THR C:50 , GLY C:51 , LYS C:52 , THR C:53 , LEU C:54 , SER C:89 , PHE C:90 , ARG C:218 , ILE C:239 , THR C:240 , ASP C:241 , MG C:604 , LEU D:223 , LYS D:224 , LEU D:225 , ARG D:226 , GLY D:227 , THR D:228 , SER D:229 , HIS D:230
BINDING SITE FOR RESIDUE ATP C 603
12
BC3
SOFTWARE
THR C:53 , GLU C:78 , ASP C:145 , ATP C:603 , ARG D:226
BINDING SITE FOR RESIDUE MG C 604
13
BC4
SOFTWARE
THR C:47 , GLU C:187 , ARG C:216 , HOH C:705 , ILE D:191
BINDING SITE FOR RESIDUE PO4 C 605
14
BC5
SOFTWARE
THR D:295 , GLU D:319 , ATP D:602 , HOH D:708
BINDING SITE FOR RESIDUE MG D 601
15
BC6
SOFTWARE
THR D:290 , GLY D:291 , GLY D:293 , LYS D:294 , THR D:295 , LEU D:296 , TRP D:331 , ARG D:451 , ILE D:472 , ASP D:474 , MG D:601 , HOH D:708 , LYS E:457 , MET E:458 , ARG E:459 , GLY E:460 , SER E:461 , TRP E:462 , HIS E:463
BINDING SITE FOR RESIDUE ATP D 602
16
BC7
SOFTWARE
GLY D:49 , GLY D:51 , LYS D:52 , THR D:53 , LEU D:54 , SER D:89 , PHE D:90 , ARG D:218 , ILE D:239 , ASP D:241 , MG D:604 , HOH D:711 , HOH D:712 , HOH D:714 , LYS E:224 , LEU E:225 , ARG E:226 , THR E:228 , SER E:229 , HIS E:230
BINDING SITE FOR RESIDUE ATP D 603
17
BC8
SOFTWARE
LYS D:52 , THR D:53 , ASP D:145 , ATP D:603 , HOH D:711 , HOH D:714
BINDING SITE FOR RESIDUE MG D 604
18
BC9
SOFTWARE
THR E:295 , ATP E:602 , HOH E:715
BINDING SITE FOR RESIDUE MG E 601
19
CC1
SOFTWARE
THR E:290 , GLY E:291 , THR E:292 , GLY E:293 , LYS E:294 , THR E:295 , LEU E:296 , SER E:330 , TRP E:331 , ILE E:472 , SER E:473 , MG E:601 , LYS F:457 , MET F:458 , ARG F:459 , SER F:461 , TRP F:462 , HIS F:463 , LYS F:465
BINDING SITE FOR RESIDUE ATP E 602
20
CC2
SOFTWARE
GLY E:49 , THR E:50 , GLY E:51 , LYS E:52 , THR E:53 , LEU E:54 , GLU E:78 , SER E:89 , PHE E:90 , ILE E:239 , ASP E:241 , MG E:604 , HOH E:710 , LEU F:223 , LYS F:224 , LEU F:225 , ARG F:226 , THR F:228 , SER F:229 , HIS F:230 , LYS F:232
BINDING SITE FOR RESIDUE ATP E 603
21
CC3
SOFTWARE
THR E:53 , ASP E:145 , ATP E:603
BINDING SITE FOR RESIDUE MG E 604
22
CC4
SOFTWARE
ARG A:459 , THR F:295 , GLU F:319 , ATP F:602
BINDING SITE FOR RESIDUE MG F 601
23
CC5
SOFTWARE
LYS A:457 , MET A:458 , ARG A:459 , GLY A:460 , SER A:461 , TRP A:462 , HIS A:463 , LYS A:465 , THR F:290 , GLY F:291 , THR F:292 , GLY F:293 , LYS F:294 , THR F:295 , LEU F:296 , TRP F:331 , ARG F:451 , ILE F:472 , SER F:473 , ASP F:474 , MG F:601
BINDING SITE FOR RESIDUE ATP F 602
24
CC6
SOFTWARE
LEU A:223 , LYS A:224 , ARG A:226 , THR A:228 , SER A:229 , HIS A:230 , LYS A:232 , HOH A:907 , GLY F:49 , THR F:50 , GLY F:51 , LYS F:52 , THR F:53 , LEU F:54 , SER F:89 , PHE F:90 , ILE F:239 , THR F:240 , ASP F:241 , MG F:604 , HOH F:701 , HOH F:704
BINDING SITE FOR RESIDUE ATP F 603
25
CC7
SOFTWARE
THR F:53 , ASP F:145 , ATP F:603 , HOH F:701
BINDING SITE FOR RESIDUE MG F 604
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: KAIC (A:19-260,B:19-260,C:19-260,D:19-26...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KAIC
PS51146
KaiC domain profile.
KAIC_SYNE7
19-260
261-493
12
A:19-260
B:19-260
C:19-260
D:19-260
E:19-260
F:19-260
A:261-493
B:261-493
C:261-493
D:261-493
E:261-493
F:261-493
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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