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(-) Description

Title :  CRYSTAL STRUCTURE OF AMPHIOXUS GFPC1A
 
Authors :  D. D. Deheyn, E. K. Bomati
Date :  03 Feb 12  (Deposition) - 15 May 13  (Release) - 29 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,F,G  (1x)
Biol. Unit 2:  C (1x),D (1x),E (1x),H (1x)
Keywords :  Fluorescent Protein, Beta-Can, Chromophore (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. K. Bomati, J. E. Haley, J. P. Noel, D. D. Deheyn
Fluorescent Proteins In Amphioxus Have Strickingly Differen Brightness, Yet Only Few (But Key) Molecular Differences
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - AMPHIOXUS GREEN FLUORESCENT PROTEIN, GFPC1A
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: T7LIKE
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BRAFLDRAFT_75523
    Organism Common: FLORIDA LANCELET
    Organism Scientific: BRANCHIOSTOMA FLORIDAE
    Organism Taxid: 7739

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB   FG 
Biological Unit 2 (1x):   C (1x)D (1x)E (1x)  H (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1CR28Mod. Amino Acid{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1CR24Mod. Amino Acid{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1CR22Mod. Amino Acid{(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID

(-) Sites  (0, 0)

(no "Site" information available for 4DKM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4DKM)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Gln A:189 -Pro A:190
2Gln B:189 -Pro B:190
3Gln C:189 -Pro C:190
4Gln D:189 -Pro D:190
5Gln E:189 -Pro E:190
6Gln F:189 -Pro F:190
7Gln G:189 -Pro G:190
8Gln H:189 -Pro H:190

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4DKM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4DKM)

(-) Exons   (0, 0)

(no "Exon" information available for 4DKM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:214
 aligned with C3YRA3_BRAFL | C3YRA3 from UniProtKB/TrEMBL  Length:218

    Alignment length:216
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      
         C3YRA3_BRAFL     3 LPTTHEVHVYGSINGVEFDLVGSGKGNPKDGSEEIQVKSTKGPLGFSPYIVVPNIGYGFHQYLPFPDGMSPFQAAADDGSGYVVHRTIQFEDGASLTGNYRYSYDGGHIKGEFHVVGSGFLGDGPVMTKSLTAVDWSVATMLFPNDTTVVSTIDWTCPTTSGKRYHATVRTNYTFAKPIAASILQKQPMFVFRKTEVKASDAEINLKEWQKAFHDL 218
               SCOP domains d4dkma_ A: automated matches                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeeee..eeeeeeeeeee......eeeeeee.......hhhhh....--.hhhh.ee..eehhhhhhhhhh..eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee..................eeeeeeeee..eeeeeeeeeee.....eeeeeeeeeeee....hhhhhhh..eeeeeeeeeee...eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4dkm A   3 LPTTHEVHVYGSINGVEFDLVGSGKGNPKDGSEEIQVKSTKGPLGFSPYIVVPNI--gFHQYLPFPDGMSPFQAAADDGSGYVVHRTIQFEDGASLTGNYRYSYDGGHIKGEFHVVGSGFPADGPVMTKSLTAVDWSVATMLFPNDTTVVSTIDWTCPTTSGKRYHATLRTNYTFAKPIAATILQKQPMFVFRKTEVKASDAEINLKEWQKAFHDL 218
                                    12        22        32        42        52    |  |62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      
                                                                                 57  |                                                                                                                                                              
                                                                                    60-CR2                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:214
 aligned with C3YRA3_BRAFL | C3YRA3 from UniProtKB/TrEMBL  Length:218

    Alignment length:216
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      
         C3YRA3_BRAFL     3 LPTTHEVHVYGSINGVEFDLVGSGKGNPKDGSEEIQVKSTKGPLGFSPYIVVPNIGYGFHQYLPFPDGMSPFQAAADDGSGYVVHRTIQFEDGASLTGNYRYSYDGGHIKGEFHVVGSGFLGDGPVMTKSLTAVDWSVATMLFPNDTTVVSTIDWTCPTTSGKRYHATVRTNYTFAKPIAASILQKQPMFVFRKTEVKASDAEINLKEWQKAFHDL 218
               SCOP domains d4dkmb_ B: automated matches                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeeee..eeeeeeeeeee......eeeeeee.......hhhhh.....--hhhh.ee..eehhhhhhhhhh..eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee..................eeeeeeeee..eeeeeeeeeee.....eeeeeeeeeeee....hhhhhhh..eeeeeeeeeee...eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4dkm B   3 LPTTHEVHVYGSINGVEFDLVGSGKGNPKDGSEEIQVKSTKGPLGFSPYIVVPNIg--FHQYLPFPDGMSPFQAAADDGSGYVVHRTIQFEDGASLTGNYRYSYDGGHIKGEFHVVGSGFPADGPVMTKSLTAVDWSVATMLFPNDTTVVSTIDWTCPTTSGKRYHATLRTNYTFAKPIAATILQKQPMFVFRKTEVKASDAEINLKEWQKAFHDL 218
                                    12        22        32        42        52     |  62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      
                                                                                  58-CR2                                                                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:214
 aligned with C3YRA3_BRAFL | C3YRA3 from UniProtKB/TrEMBL  Length:218

    Alignment length:216
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      
         C3YRA3_BRAFL     3 LPTTHEVHVYGSINGVEFDLVGSGKGNPKDGSEEIQVKSTKGPLGFSPYIVVPNIGYGFHQYLPFPDGMSPFQAAADDGSGYVVHRTIQFEDGASLTGNYRYSYDGGHIKGEFHVVGSGFLGDGPVMTKSLTAVDWSVATMLFPNDTTVVSTIDWTCPTTSGKRYHATVRTNYTFAKPIAASILQKQPMFVFRKTEVKASDAEINLKEWQKAFHDL 218
               SCOP domains d4dkmc_ C: automated matches                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeeee..eeeeeeeeeee......eeeeeee.......hhhhh....--.hhhh.ee..eehhhhhhhhhh..eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee..................eeeeeeeee..eeeeeeeeeee.....eeeeeeeeeeee....hhhhhhh..eeeeeeeeeee...eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4dkm C   3 LPTTHEVHVYGSINGVEFDLVGSGKGNPKDGSEEIQVKSTKGPLGFSPYIVVPNI--gFHQYLPFPDGMSPFQAAADDGSGYVVHRTIQFEDGASLTGNYRYSYDGGHIKGEFHVVGSGFPADGPVMTKSLTAVDWSVATMLFPNDTTVVSTIDWTCPTTSGKRYHATLRTNYTFAKPIAATILQKQPMFVFRKTEVKASDAEINLKEWQKAFHDL 218
                                    12        22        32        42        52    |  |62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      
                                                                                 57  |                                                                                                                                                              
                                                                                    60-CR2                                                                                                                                                          


Chain D from PDB  Type:PROTEIN  Length:214
 aligned with C3YRA3_BRAFL | C3YRA3 from UniProtKB/TrEMBL  Length:218

    Alignment length:216
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      
         C3YRA3_BRAFL     3 LPTTHEVHVYGSINGVEFDLVGSGKGNPKDGSEEIQVKSTKGPLGFSPYIVVPNIGYGFHQYLPFPDGMSPFQAAADDGSGYVVHRTIQFEDGASLTGNYRYSYDGGHIKGEFHVVGSGFLGDGPVMTKSLTAVDWSVATMLFPNDTTVVSTIDWTCPTTSGKRYHATVRTNYTFAKPIAASILQKQPMFVFRKTEVKASDAEINLKEWQKAFHDL 218
               SCOP domains d4dkmd_ D: automated matches                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeeee..eeeeeeeeeee......eeeeeee.......hhhhh....--.hhhh.ee..eehhhhhhhhhh..eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee..................eeeeeeeee..eeeeeeeeeee.....eeeeeeeeeeee....hhhhhhh..eeeeeeeeeee...eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4dkm D   3 LPTTHEVHVYGSINGVEFDLVGSGKGNPKDGSEEIQVKSTKGPLGFSPYIVVPNI--gFHQYLPFPDGMSPFQAAADDGSGYVVHRTIQFEDGASLTGNYRYSYDGGHIKGEFHVVGSGFPADGPVMTKSLTAVDWSVATMLFPNDTTVVSTIDWTCPTTSGKRYHATLRTNYTFAKPIAATILQKQPMFVFRKTEVKASDAEINLKEWQKAFHDL 218
                                    12        22        32        42        52    |  |62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      
                                                                                 57  |                                                                                                                                                              
                                                                                    60-CR2                                                                                                                                                          


Chain E from PDB  Type:PROTEIN  Length:214
 aligned with C3YRA3_BRAFL | C3YRA3 from UniProtKB/TrEMBL  Length:218

    Alignment length:216
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      
         C3YRA3_BRAFL     3 LPTTHEVHVYGSINGVEFDLVGSGKGNPKDGSEEIQVKSTKGPLGFSPYIVVPNIGYGFHQYLPFPDGMSPFQAAADDGSGYVVHRTIQFEDGASLTGNYRYSYDGGHIKGEFHVVGSGFLGDGPVMTKSLTAVDWSVATMLFPNDTTVVSTIDWTCPTTSGKRYHATVRTNYTFAKPIAASILQKQPMFVFRKTEVKASDAEINLKEWQKAFHDL 218
               SCOP domains d4dkme_ E: automated matches                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeeee..eeeeeeeeeee......eeeeeee.......hhhhh....--.hhhh.ee..eehhhhhhhhhh..eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee..................eeeeeeeee..eeeeeeeeeee.....eeeeeeeeeeee....hhhhhhh..eeeeeeeeeee...eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4dkm E   3 LPTTHEVHVYGSINGVEFDLVGSGKGNPKDGSEEIQVKSTKGPLGFSPYIVVPNI--gFHQYLPFPDGMSPFQAAADDGSGYVVHRTIQFEDGASLTGNYRYSYDGGHIKGEFHVVGSGFPADGPVMTKSLTAVDWSVATMLFPNDTTVVSTIDWTCPTTSGKRYHATLRTNYTFAKPIAATILQKQPMFVFRKTEVKASDAEINLKEWQKAFHDL 218
                                    12        22        32        42        52    |  |62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      
                                                                                 57  |                                                                                                                                                              
                                                                                    60-CR2                                                                                                                                                          


Chain F from PDB  Type:PROTEIN  Length:214
 aligned with C3YRA3_BRAFL | C3YRA3 from UniProtKB/TrEMBL  Length:218

    Alignment length:216
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      
         C3YRA3_BRAFL     3 LPTTHEVHVYGSINGVEFDLVGSGKGNPKDGSEEIQVKSTKGPLGFSPYIVVPNIGYGFHQYLPFPDGMSPFQAAADDGSGYVVHRTIQFEDGASLTGNYRYSYDGGHIKGEFHVVGSGFLGDGPVMTKSLTAVDWSVATMLFPNDTTVVSTIDWTCPTTSGKRYHATVRTNYTFAKPIAASILQKQPMFVFRKTEVKASDAEINLKEWQKAFHDL 218
               SCOP domains d4dkmf_ F: automated matches                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeeee..eeeeeeeeeee......eeeeeee.......hhhhh....--.hhhh.ee..eehhhhhhhhhh..eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee..................eeeeeeeee..eeeeeeeeeee.....eeeeeeeeeeee....hhhhhhh..eeeeeeeeeee...eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4dkm F   3 LPTTHEVHVYGSINGVEFDLVGSGKGNPKDGSEEIQVKSTKGPLGFSPYIVVPNI--gFHQYLPFPDGMSPFQAAADDGSGYVVHRTIQFEDGASLTGNYRYSYDGGHIKGEFHVVGSGFPADGPVMTKSLTAVDWSVATMLFPNDTTVVSTIDWTCPTTSGKRYHATLRTNYTFAKPIAATILQKQPMFVFRKTEVKASDAEINLKEWQKAFHDL 218
                                    12        22        32        42        52    |  |62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      
                                                                                 57  |                                                                                                                                                              
                                                                                    60-CR2                                                                                                                                                          


Chain G from PDB  Type:PROTEIN  Length:214
 aligned with C3YRA3_BRAFL | C3YRA3 from UniProtKB/TrEMBL  Length:218

    Alignment length:216
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      
         C3YRA3_BRAFL     3 LPTTHEVHVYGSINGVEFDLVGSGKGNPKDGSEEIQVKSTKGPLGFSPYIVVPNIGYGFHQYLPFPDGMSPFQAAADDGSGYVVHRTIQFEDGASLTGNYRYSYDGGHIKGEFHVVGSGFLGDGPVMTKSLTAVDWSVATMLFPNDTTVVSTIDWTCPTTSGKRYHATVRTNYTFAKPIAASILQKQPMFVFRKTEVKASDAEINLKEWQKAFHDL 218
               SCOP domains d4dkmg_ G: automated matches                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeeee..eeeeeeeeeee......eeeeeee.......hhhhh....--.hhhh.ee..eehhhhhhhhhh..eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee..................eeeeeeeee..eeeeeeeeeee.....eeeeeeeeeeee....hhhhhhh..eeeeeeeeeee...eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4dkm G   3 LPTTHEVHVYGSINGVEFDLVGSGKGNPKDGSEEIQVKSTKGPLGFSPYIVVPNI--gFHQYLPFPDGMSPFQAAADDGSGYVVHRTIQFEDGASLTGNYRYSYDGGHIKGEFHVVGSGFPADGPVMTKSLTAVDWSVATMLFPNDTTVVSTIDWTCPTTSGKRYHATLRTNYTFAKPIAATILQKQPMFVFRKTEVKASDAEINLKEWQKAFHDL 218
                                    12        22        32        42        52    |  |62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      
                                                                                 57  |                                                                                                                                                              
                                                                                    60-CR2                                                                                                                                                          


Chain H from PDB  Type:PROTEIN  Length:214
 aligned with C3YRA3_BRAFL | C3YRA3 from UniProtKB/TrEMBL  Length:218

    Alignment length:216
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      
         C3YRA3_BRAFL     3 LPTTHEVHVYGSINGVEFDLVGSGKGNPKDGSEEIQVKSTKGPLGFSPYIVVPNIGYGFHQYLPFPDGMSPFQAAADDGSGYVVHRTIQFEDGASLTGNYRYSYDGGHIKGEFHVVGSGFLGDGPVMTKSLTAVDWSVATMLFPNDTTVVSTIDWTCPTTSGKRYHATVRTNYTFAKPIAASILQKQPMFVFRKTEVKASDAEINLKEWQKAFHDL 218
               SCOP domains d4dkmh_ H: automated matches                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeeee..eeeeeeeeeee......eeeeeee.......hhhhh....--.hhhh.ee..eehhhhhhhhhh..eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee..................eeeeeeeee..eeeeeeeeeee.....eeeeeeeeeeee....hhhhhhh..eeeeeeeeeee...eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4dkm H   3 LPTTHEVHVYGSINGVEFDLVGSGKGNPKDGSEEIQVKSTKGPLGFSPYIVVPNI--gFHQYLPFPDGMSPFQAAADDGSGYVVHRTIQFEDGASLTGNYRYSYDGGHIKGEFHVVGSGFPADGPVMTKSLTAVDWSVATMLFPNDTTVVSTIDWTCPTTSGKRYHATLRTNYTFAKPIAATILQKQPMFVFRKTEVKASDAEINLKEWQKAFHDL 218
                                    12        22        32        42        52    |  |62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212      
                                                                                 57  |                                                                                                                                                              
                                                                                    60-CR2
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4DKM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4DKM)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (C3YRA3_BRAFL | C3YRA3)
biological process
    GO:0008218    bioluminescence    The production of light by certain enzyme-catalyzed reactions in cells.

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  Cis Peptide Bonds
    Gln A:189 - Pro A:190   [ RasMol ]  
    Gln B:189 - Pro B:190   [ RasMol ]  
    Gln C:189 - Pro C:190   [ RasMol ]  
    Gln D:189 - Pro D:190   [ RasMol ]  
    Gln E:189 - Pro E:190   [ RasMol ]  
    Gln F:189 - Pro F:190   [ RasMol ]  
    Gln G:189 - Pro G:190   [ RasMol ]  
    Gln H:189 - Pro H:190   [ RasMol ]  
 
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  4dkm
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  C3YRA3_BRAFL | C3YRA3
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 4DKM)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4DKM)