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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF AMPHIOXUS GFPC1A
Keywords FLUORESCENT PROTEIN, BETA-CAN, CHROMOPHORE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   4DKM     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   AMPHIOXUS GREEN FLUORESCENT PROTEIN, GFPC1A  A 214 1653 19
2  Protein   AMPHIOXUS GREEN FLUORESCENT PROTEIN, GFPC1A  B 214 1653 19
3  Protein   AMPHIOXUS GREEN FLUORESCENT PROTEIN, GFPC1A  C 214 1653 19
4  Protein   AMPHIOXUS GREEN FLUORESCENT PROTEIN, GFPC1A  D 214 1653 19
5  Protein   AMPHIOXUS GREEN FLUORESCENT PROTEIN, GFPC1A  E 214 1653 19
6  Protein   AMPHIOXUS GREEN FLUORESCENT PROTEIN, GFPC1A  F 214 1653 19
7  Protein   AMPHIOXUS GREEN FLUORESCENT PROTEIN, GFPC1A  G 214 1653 19
8  Protein   AMPHIOXUS GREEN FLUORESCENT PROTEIN, GFPC1A  H 214 1653 19
9 Water     581 0 581
total       2293 13224 733

Proteins
Unit 1 LEU3 PRO4 THR5 THR6 HIS7 GLU8 VAL9 HIS10 VAL11 TYR12 GLY13 SER14 ILE15 ASN16 GLY17 VAL18 GLU19 PHE20 ASP21 LEU22 VAL23 GLY24 SER25 GLY26 LYS27 GLY28 ASN29 PRO30 LYS31 ASP32 GLY33 SER34 GLU35 GLU36 ILE37 GLN38 VAL39 LYS40 SER41 THR42 LYS43 GLY44 PRO45 LEU46 GLY47 PHE48 SER49 PRO50 TYR51 ILE52 VAL53 VAL54 PRO55 ASN56 ILE57 CR260 PHE61 HIS62 GLN63 TYR64 LEU65 PRO66 PHE67 PRO68 ASP69 GLY70 MET71 SER72 PRO73 PHE74 GLN75 ALA76 ALA77 ALA78 ASP79 ASP80 GLY81 SER82 GLY83 TYR84 VAL85 VAL86 HIS87 ARG88 THR89 ILE90 GLN91 PHE92 GLU93 ASP94 GLY95 ALA96 SER97 LEU98 THR99 GLY100 ASN101 TYR102 ARG103 TYR104 SER105 TYR106 ASP107 GLY108 GLY109 HIS110 ILE111 LYS112 GLY113 GLU114 PHE115 HIS116 VAL117 VAL118 GLY119 SER120 GLY121 PHE122 PRO123 ALA124 ASP125 GLY126 PRO127 VAL128 MET129 THR130 LYS131 SER132 LEU133 THR134 ALA135 VAL136 ASP137 TRP138 SER139 VAL140 ALA141 THR142 MET143 LEU144 PHE145 PRO146 ASN147 ASP148 THR149 THR150 VAL151 VAL152 SER153 THR154 ILE155 ASP156 TRP157 THR158 CYS159 PRO160 THR161 THR162 SER163 GLY164 LYS165 ARG166 TYR167 HIS168 ALA169 THR170 LEU171 ARG172 THR173 ASN174 TYR175 THR176 PHE177 ALA178 LYS179 PRO180 ILE181 ALA182 ALA183 THR184 ILE185 LEU186 GLN187 LYS188 GLN189 PRO190 MET191 PHE192 VAL193 PHE194 ARG195 LYS196 THR197 GLU198 VAL199 LYS200 ALA201 SER202 ASP203 ALA204 GLU205 ILE206 ASN207 LEU208 LYS209 GLU210 TRP211 GLN212 LYS213 ALA214 PHE215 HIS216 ASP217 LEU218
Unit 2 LEU3 PRO4 THR5 THR6 HIS7 GLU8 VAL9 HIS10 VAL11 TYR12 GLY13 SER14 ILE15 ASN16 GLY17 VAL18 GLU19 PHE20 ASP21 LEU22 VAL23 GLY24 SER25 GLY26 LYS27 GLY28 ASN29 PRO30 LYS31 ASP32 GLY33 SER34 GLU35 GLU36 ILE37 GLN38 VAL39 LYS40 SER41 THR42 LYS43 GLY44 PRO45 LEU46 GLY47 PHE48 SER49 PRO50 TYR51 ILE52 VAL53 VAL54 PRO55 ASN56 ILE57 CR258 PHE61 HIS62 GLN63 TYR64 LEU65 PRO66 PHE67 PRO68 ASP69 GLY70 MET71 SER72 PRO73 PHE74 GLN75 ALA76 ALA77 ALA78 ASP79 ASP80 GLY81 SER82 GLY83 TYR84 VAL85 VAL86 HIS87 ARG88 THR89 ILE90 GLN91 PHE92 GLU93 ASP94 GLY95 ALA96 SER97 LEU98 THR99 GLY100 ASN101 TYR102 ARG103 TYR104 SER105 TYR106 ASP107 GLY108 GLY109 HIS110 ILE111 LYS112 GLY113 GLU114 PHE115 HIS116 VAL117 VAL118 GLY119 SER120 GLY121 PHE122 PRO123 ALA124 ASP125 GLY126 PRO127 VAL128 MET129 THR130 LYS131 SER132 LEU133 THR134 ALA135 VAL136 ASP137 TRP138 SER139 VAL140 ALA141 THR142 MET143 LEU144 PHE145 PRO146 ASN147 ASP148 THR149 THR150 VAL151 VAL152 SER153 THR154 ILE155 ASP156 TRP157 THR158 CYS159 PRO160 THR161 THR162 SER163 GLY164 LYS165 ARG166 TYR167 HIS168 ALA169 THR170 LEU171 ARG172 THR173 ASN174 TYR175 THR176 PHE177 ALA178 LYS179 PRO180 ILE181 ALA182 ALA183 THR184 ILE185 LEU186 GLN187 LYS188 GLN189 PRO190 MET191 PHE192 VAL193 PHE194 ARG195 LYS196 THR197 GLU198 VAL199 LYS200 ALA201 SER202 ASP203 ALA204 GLU205 ILE206 ASN207 LEU208 LYS209 GLU210 TRP211 GLN212 LYS213 ALA214 PHE215 HIS216 ASP217 LEU218
Unit 3 LEU3 PRO4 THR5 THR6 HIS7 GLU8 VAL9 HIS10 VAL11 TYR12 GLY13 SER14 ILE15 ASN16 GLY17 VAL18 GLU19 PHE20 ASP21 LEU22 VAL23 GLY24 SER25 GLY26 LYS27 GLY28 ASN29 PRO30 LYS31 ASP32 GLY33 SER34 GLU35 GLU36 ILE37 GLN38 VAL39 LYS40 SER41 THR42 LYS43 GLY44 PRO45 LEU46 GLY47 PHE48 SER49 PRO50 TYR51 ILE52 VAL53 VAL54 PRO55 ASN56 ILE57 CR260 PHE61 HIS62 GLN63 TYR64 LEU65 PRO66 PHE67 PRO68 ASP69 GLY70 MET71 SER72 PRO73 PHE74 GLN75 ALA76 ALA77 ALA78 ASP79 ASP80 GLY81 SER82 GLY83 TYR84 VAL85 VAL86 HIS87 ARG88 THR89 ILE90 GLN91 PHE92 GLU93 ASP94 GLY95 ALA96 SER97 LEU98 THR99 GLY100 ASN101 TYR102 ARG103 TYR104 SER105 TYR106 ASP107 GLY108 GLY109 HIS110 ILE111 LYS112 GLY113 GLU114 PHE115 HIS116 VAL117 VAL118 GLY119 SER120 GLY121 PHE122 PRO123 ALA124 ASP125 GLY126 PRO127 VAL128 MET129 THR130 LYS131 SER132 LEU133 THR134 ALA135 VAL136 ASP137 TRP138 SER139 VAL140 ALA141 THR142 MET143 LEU144 PHE145 PRO146 ASN147 ASP148 THR149 THR150 VAL151 VAL152 SER153 THR154 ILE155 ASP156 TRP157 THR158 CYS159 PRO160 THR161 THR162 SER163 GLY164 LYS165 ARG166 TYR167 HIS168 ALA169 THR170 LEU171 ARG172 THR173 ASN174 TYR175 THR176 PHE177 ALA178 LYS179 PRO180 ILE181 ALA182 ALA183 THR184 ILE185 LEU186 GLN187 LYS188 GLN189 PRO190 MET191 PHE192 VAL193 PHE194 ARG195 LYS196 THR197 GLU198 VAL199 LYS200 ALA201 SER202 ASP203 ALA204 GLU205 ILE206 ASN207 LEU208 LYS209 GLU210 TRP211 GLN212 LYS213 ALA214 PHE215 HIS216 ASP217 LEU218
Unit 4 LEU3 PRO4 THR5 THR6 HIS7 GLU8 VAL9 HIS10 VAL11 TYR12 GLY13 SER14 ILE15 ASN16 GLY17 VAL18 GLU19 PHE20 ASP21 LEU22 VAL23 GLY24 SER25 GLY26 LYS27 GLY28 ASN29 PRO30 LYS31 ASP32 GLY33 SER34 GLU35 GLU36 ILE37 GLN38 VAL39 LYS40 SER41 THR42 LYS43 GLY44 PRO45 LEU46 GLY47 PHE48 SER49 PRO50 TYR51 ILE52 VAL53 VAL54 PRO55 ASN56 ILE57 CR260 PHE61 HIS62 GLN63 TYR64 LEU65 PRO66 PHE67 PRO68 ASP69 GLY70 MET71 SER72 PRO73 PHE74 GLN75 ALA76 ALA77 ALA78 ASP79 ASP80 GLY81 SER82 GLY83 TYR84 VAL85 VAL86 HIS87 ARG88 THR89 ILE90 GLN91 PHE92 GLU93 ASP94 GLY95 ALA96 SER97 LEU98 THR99 GLY100 ASN101 TYR102 ARG103 TYR104 SER105 TYR106 ASP107 GLY108 GLY109 HIS110 ILE111 LYS112 GLY113 GLU114 PHE115 HIS116 VAL117 VAL118 GLY119 SER120 GLY121 PHE122 PRO123 ALA124 ASP125 GLY126 PRO127 VAL128 MET129 THR130 LYS131 SER132 LEU133 THR134 ALA135 VAL136 ASP137 TRP138 SER139 VAL140 ALA141 THR142 MET143 LEU144 PHE145 PRO146 ASN147 ASP148 THR149 THR150 VAL151 VAL152 SER153 THR154 ILE155 ASP156 TRP157 THR158 CYS159 PRO160 THR161 THR162 SER163 GLY164 LYS165 ARG166 TYR167 HIS168 ALA169 THR170 LEU171 ARG172 THR173 ASN174 TYR175 THR176 PHE177 ALA178 LYS179 PRO180 ILE181 ALA182 ALA183 THR184 ILE185 LEU186 GLN187 LYS188 GLN189 PRO190 MET191 PHE192 VAL193 PHE194 ARG195 LYS196 THR197 GLU198 VAL199 LYS200 ALA201 SER202 ASP203 ALA204 GLU205 ILE206 ASN207 LEU208 LYS209 GLU210 TRP211 GLN212 LYS213 ALA214 PHE215 HIS216 ASP217 LEU218
Unit 5 LEU3 PRO4 THR5 THR6 HIS7 GLU8 VAL9 HIS10 VAL11 TYR12 GLY13 SER14 ILE15 ASN16 GLY17 VAL18 GLU19 PHE20 ASP21 LEU22 VAL23 GLY24 SER25 GLY26 LYS27 GLY28 ASN29 PRO30 LYS31 ASP32 GLY33 SER34 GLU35 GLU36 ILE37 GLN38 VAL39 LYS40 SER41 THR42 LYS43 GLY44 PRO45 LEU46 GLY47 PHE48 SER49 PRO50 TYR51 ILE52 VAL53 VAL54 PRO55 ASN56 ILE57 CR260 PHE61 HIS62 GLN63 TYR64 LEU65 PRO66 PHE67 PRO68 ASP69 GLY70 MET71 SER72 PRO73 PHE74 GLN75 ALA76 ALA77 ALA78 ASP79 ASP80 GLY81 SER82 GLY83 TYR84 VAL85 VAL86 HIS87 ARG88 THR89 ILE90 GLN91 PHE92 GLU93 ASP94 GLY95 ALA96 SER97 LEU98 THR99 GLY100 ASN101 TYR102 ARG103 TYR104 SER105 TYR106 ASP107 GLY108 GLY109 HIS110 ILE111 LYS112 GLY113 GLU114 PHE115 HIS116 VAL117 VAL118 GLY119 SER120 GLY121 PHE122 PRO123 ALA124 ASP125 GLY126 PRO127 VAL128 MET129 THR130 LYS131 SER132 LEU133 THR134 ALA135 VAL136 ASP137 TRP138 SER139 VAL140 ALA141 THR142 MET143 LEU144 PHE145 PRO146 ASN147 ASP148 THR149 THR150 VAL151 VAL152 SER153 THR154 ILE155 ASP156 TRP157 THR158 CYS159 PRO160 THR161 THR162 SER163 GLY164 LYS165 ARG166 TYR167 HIS168 ALA169 THR170 LEU171 ARG172 THR173 ASN174 TYR175 THR176 PHE177 ALA178 LYS179 PRO180 ILE181 ALA182 ALA183 THR184 ILE185 LEU186 GLN187 LYS188 GLN189 PRO190 MET191 PHE192 VAL193 PHE194 ARG195 LYS196 THR197 GLU198 VAL199 LYS200 ALA201 SER202 ASP203 ALA204 GLU205 ILE206 ASN207 LEU208 LYS209 GLU210 TRP211 GLN212 LYS213 ALA214 PHE215 HIS216 ASP217 LEU218
Unit 6 LEU3 PRO4 THR5 THR6 HIS7 GLU8 VAL9 HIS10 VAL11 TYR12 GLY13 SER14 ILE15 ASN16 GLY17 VAL18 GLU19 PHE20 ASP21 LEU22 VAL23 GLY24 SER25 GLY26 LYS27 GLY28 ASN29 PRO30 LYS31 ASP32 GLY33 SER34 GLU35 GLU36 ILE37 GLN38 VAL39 LYS40 SER41 THR42 LYS43 GLY44 PRO45 LEU46 GLY47 PHE48 SER49 PRO50 TYR51 ILE52 VAL53 VAL54 PRO55 ASN56 ILE57 CR260 PHE61 HIS62 GLN63 TYR64 LEU65 PRO66 PHE67 PRO68 ASP69 GLY70 MET71 SER72 PRO73 PHE74 GLN75 ALA76 ALA77 ALA78 ASP79 ASP80 GLY81 SER82 GLY83 TYR84 VAL85 VAL86 HIS87 ARG88 THR89 ILE90 GLN91 PHE92 GLU93 ASP94 GLY95 ALA96 SER97 LEU98 THR99 GLY100 ASN101 TYR102 ARG103 TYR104 SER105 TYR106 ASP107 GLY108 GLY109 HIS110 ILE111 LYS112 GLY113 GLU114 PHE115 HIS116 VAL117 VAL118 GLY119 SER120 GLY121 PHE122 PRO123 ALA124 ASP125 GLY126 PRO127 VAL128 MET129 THR130 LYS131 SER132 LEU133 THR134 ALA135 VAL136 ASP137 TRP138 SER139 VAL140 ALA141 THR142 MET143 LEU144 PHE145 PRO146 ASN147 ASP148 THR149 THR150 VAL151 VAL152 SER153 THR154 ILE155 ASP156 TRP157 THR158 CYS159 PRO160 THR161 THR162 SER163 GLY164 LYS165 ARG166 TYR167 HIS168 ALA169 THR170 LEU171 ARG172 THR173 ASN174 TYR175 THR176 PHE177 ALA178 LYS179 PRO180 ILE181 ALA182 ALA183 THR184 ILE185 LEU186 GLN187 LYS188 GLN189 PRO190 MET191 PHE192 VAL193 PHE194 ARG195 LYS196 THR197 GLU198 VAL199 LYS200 ALA201 SER202 ASP203 ALA204 GLU205 ILE206 ASN207 LEU208 LYS209 GLU210 TRP211 GLN212 LYS213 ALA214 PHE215 HIS216 ASP217 LEU218
Unit 7 LEU3 PRO4 THR5 THR6 HIS7 GLU8 VAL9 HIS10 VAL11 TYR12 GLY13 SER14 ILE15 ASN16 GLY17 VAL18 GLU19 PHE20 ASP21 LEU22 VAL23 GLY24 SER25 GLY26 LYS27 GLY28 ASN29 PRO30 LYS31 ASP32 GLY33 SER34 GLU35 GLU36 ILE37 GLN38 VAL39 LYS40 SER41 THR42 LYS43 GLY44 PRO45 LEU46 GLY47 PHE48 SER49 PRO50 TYR51 ILE52 VAL53 VAL54 PRO55 ASN56 ILE57 CR260 PHE61 HIS62 GLN63 TYR64 LEU65 PRO66 PHE67 PRO68 ASP69 GLY70 MET71 SER72 PRO73 PHE74 GLN75 ALA76 ALA77 ALA78 ASP79 ASP80 GLY81 SER82 GLY83 TYR84 VAL85 VAL86 HIS87 ARG88 THR89 ILE90 GLN91 PHE92 GLU93 ASP94 GLY95 ALA96 SER97 LEU98 THR99 GLY100 ASN101 TYR102 ARG103 TYR104 SER105 TYR106 ASP107 GLY108 GLY109 HIS110 ILE111 LYS112 GLY113 GLU114 PHE115 HIS116 VAL117 VAL118 GLY119 SER120 GLY121 PHE122 PRO123 ALA124 ASP125 GLY126 PRO127 VAL128 MET129 THR130 LYS131 SER132 LEU133 THR134 ALA135 VAL136 ASP137 TRP138 SER139 VAL140 ALA141 THR142 MET143 LEU144 PHE145 PRO146 ASN147 ASP148 THR149 THR150 VAL151 VAL152 SER153 THR154 ILE155 ASP156 TRP157 THR158 CYS159 PRO160 THR161 THR162 SER163 GLY164 LYS165 ARG166 TYR167 HIS168 ALA169 THR170 LEU171 ARG172 THR173 ASN174 TYR175 THR176 PHE177 ALA178 LYS179 PRO180 ILE181 ALA182 ALA183 THR184 ILE185 LEU186 GLN187 LYS188 GLN189 PRO190 MET191 PHE192 VAL193 PHE194 ARG195 LYS196 THR197 GLU198 VAL199 LYS200 ALA201 SER202 ASP203 ALA204 GLU205 ILE206 ASN207 LEU208 LYS209 GLU210 TRP211 GLN212 LYS213 ALA214 PHE215 HIS216 ASP217 LEU218
Unit 8 LEU3 PRO4 THR5 THR6 HIS7 GLU8 VAL9 HIS10 VAL11 TYR12 GLY13 SER14 ILE15 ASN16 GLY17 VAL18 GLU19 PHE20 ASP21 LEU22 VAL23 GLY24 SER25 GLY26 LYS27 GLY28 ASN29 PRO30 LYS31 ASP32 GLY33 SER34 GLU35 GLU36 ILE37 GLN38 VAL39 LYS40 SER41 THR42 LYS43 GLY44 PRO45 LEU46 GLY47 PHE48 SER49 PRO50 TYR51 ILE52 VAL53 VAL54 PRO55 ASN56 ILE57 CR260 PHE61 HIS62 GLN63 TYR64 LEU65 PRO66 PHE67 PRO68 ASP69 GLY70 MET71 SER72 PRO73 PHE74 GLN75 ALA76 ALA77 ALA78 ASP79 ASP80 GLY81 SER82 GLY83 TYR84 VAL85 VAL86 HIS87 ARG88 THR89 ILE90 GLN91 PHE92 GLU93 ASP94 GLY95 ALA96 SER97 LEU98 THR99 GLY100 ASN101 TYR102 ARG103 TYR104 SER105 TYR106 ASP107 GLY108 GLY109 HIS110 ILE111 LYS112 GLY113 GLU114 PHE115 HIS116 VAL117 VAL118 GLY119 SER120 GLY121 PHE122 PRO123 ALA124 ASP125 GLY126 PRO127 VAL128 MET129 THR130 LYS131 SER132 LEU133 THR134 ALA135 VAL136 ASP137 TRP138 SER139 VAL140 ALA141 THR142 MET143 LEU144 PHE145 PRO146 ASN147 ASP148 THR149 THR150 VAL151 VAL152 SER153 THR154 ILE155 ASP156 TRP157 THR158 CYS159 PRO160 THR161 THR162 SER163 GLY164 LYS165 ARG166 TYR167 HIS168 ALA169 THR170 LEU171 ARG172 THR173 ASN174 TYR175 THR176 PHE177 ALA178 LYS179 PRO180 ILE181 ALA182 ALA183 THR184 ILE185 LEU186 GLN187 LYS188 GLN189 PRO190 MET191 PHE192 VAL193 PHE194 ARG195 LYS196 THR197 GLU198 VAL199 LYS200 ALA201 SER202 ASP203 ALA204 GLU205 ILE206 ASN207 LEU208 LYS209 GLU210 TRP211 GLN212 LYS213 ALA214 PHE215 HIS216 ASP217 LEU218

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany