4CQ1 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Biological Unit 7 (Jmol Viewer)

Biological Unit 8 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE NEURONAL ISOFORM OF PTB

Authors :   A. Joshi, A. N. Buckroyd, S. Curry

Date :   10 Feb 14 (Deposition) - 19 Feb 14 (Release) - 13 Jan 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.69

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)
Biol. Unit 7: G  (1x)
Biol. Unit 8: H  (1x)

Keywords :   Translation, Rna Binding Protein, Nptb, Brptb (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Joshi, V. Esteve, A. N. Buckroyd, M. Blatter, F. H. -T. Allain, S. Curry
Solution And Crystal Structures Of A C Terminal Fragment Of The Neuronal Isoform Of The Polypyrimidine Tract Binding Protein (Nptb)
Peerj V. 2 E305 2014
PubMed-ID: 24688880 | Reference-DOI: 10.7717/PEERJ.305

Molecule 1 - POLYPYRIMIDINE TRACT-BINDING PROTEIN 2
	Chains	:	A, B, C, D, E, F, G, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector	:	PETM-11
	Expression System Vector Type	:	PLASMID
	Fragment	:	RRM3-RRM4, RESIDUES 336-531
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	NEURAL POLYPYRIMIDINE TRACT-BINDING PROTEIN, NEURALLY-ENRICHED HOMOLOG OF PTB, PTB-LIKE PROTEIN, NPTB

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F
Biological Unit 7 (1x)	:							G
Biological Unit 8 (1x)	:								H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 20)

No.	Name	Count	Type	Full Name
1	CL	8	Ligand/Ion	CHLORIDE ION
2	ZN	12	Ligand/Ion	ZINC ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 5 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 6 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 7 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 8 (0, 0)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (20, 20)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:412 , CL A:1533 , HOH A:2043 , HIS C:491	BINDING SITE FOR RESIDUE ZN A1532
02	AC2	SOFTWARE	LEU A:371 , HIS A:412 , ZN A:1532 , HIS C:491	BINDING SITE FOR RESIDUE CL A1533
03	AC3	SOFTWARE	HIS B:412 , CL B:1533 , HOH B:2054 , HIS D:491	BINDING SITE FOR RESIDUE ZN B1532
04	AC4	SOFTWARE	HIS B:412 , ZN B:1532 , HIS D:491	BINDING SITE FOR RESIDUE CL B1533
05	AC5	SOFTWARE	HIS A:491 , HOH A:2078 , HIS C:412 , CL C:1533 , HOH C:2045	BINDING SITE FOR RESIDUE ZN C1532
06	AC6	SOFTWARE	HIS C:412 , ZN C:1532 , HOH C:2042	BINDING SITE FOR RESIDUE CL C1533
07	AC7	SOFTWARE	HIS B:491 , HOH B:2103 , HIS D:412 , CL D:1532	BINDING SITE FOR RESIDUE ZN B1534
08	AC8	SOFTWARE	HIS B:491 , ZN B:1534 , LEU D:379 , HIS D:412	BINDING SITE FOR RESIDUE CL D1532
09	AC9	SOFTWARE	HIS E:412 , CL E:1533 , HOH E:2047 , HIS G:491	BINDING SITE FOR RESIDUE ZN E1532
10	BC1	SOFTWARE	LEU E:371 , ZN E:1532 , HIS G:491	BINDING SITE FOR RESIDUE CL E1533
11	BC2	SOFTWARE	HIS F:412 , CL F:1533 , HOH F:2048 , HIS H:491	BINDING SITE FOR RESIDUE ZN F1532
12	BC3	SOFTWARE	HIS F:412 , ZN F:1532 , HIS H:491	BINDING SITE FOR RESIDUE CL F1533
13	BC4	SOFTWARE	HIS E:491 , HIS G:412 , CL G:1533 , HOH G:2047	BINDING SITE FOR RESIDUE ZN G1532
14	BC5	SOFTWARE	HIS E:491 , HIS G:412 , ZN G:1532	BINDING SITE FOR RESIDUE CL G1533
15	BC6	SOFTWARE	HIS F:491 , CL F:1535 , HOH F:2085 , HIS H:412	BINDING SITE FOR RESIDUE ZN F1534
16	BC7	SOFTWARE	HIS F:491 , ZN F:1534 , HIS H:412	BINDING SITE FOR RESIDUE CL F1535
17	BC8	SOFTWARE	HIS A:520 , HIS D:520	BINDING SITE FOR RESIDUE ZN A1534
18	BC9	SOFTWARE	HIS B:520 , HIS C:520	BINDING SITE FOR RESIDUE ZN B1535
19	CC1	SOFTWARE	HIS E:520 , HIS H:520	BINDING SITE FOR RESIDUE ZN E1534
20	CC2	SOFTWARE	HIS F:520 , HIS G:520	BINDING SITE FOR RESIDUE ZN F1536

(no "SS Bond" information available for 4CQ1)

(no "Cis Peptide Bond" information available for 4CQ1)

(no "SAP(SNP)/Variant" information available for 4CQ1)

Asymmetric Unit (1, 16)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RRM	PS50102	Eukaryotic RNA Recognition Motif (RRM) profile.	PTBP2_HUMAN	59-133 181-257 338-412 455-529	16	- - A:338-412 B:338-412 C:338-412 D:338-412 E:338-412 F:338-412 G:338-412 H:338-412 A:455-529 B:455-529 C:455-529 D:455-529 E:455-529 F:455-529 G:455-529 H:455-529

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RRM	PS50102	Eukaryotic RNA Recognition Motif (RRM) profile.	PTBP2_HUMAN	59-133 181-257 338-412 455-529	2	- - A:338-412 - - - - - - - A:455-529 - - - - - - -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RRM	PS50102	Eukaryotic RNA Recognition Motif (RRM) profile.	PTBP2_HUMAN	59-133 181-257 338-412 455-529	2	- - - B:338-412 - - - - - - - B:455-529 - - - - - -

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RRM	PS50102	Eukaryotic RNA Recognition Motif (RRM) profile.	PTBP2_HUMAN	59-133 181-257 338-412 455-529	2	- - - - C:338-412 - - - - - - - C:455-529 - - - - -

Biological Unit 4 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RRM	PS50102	Eukaryotic RNA Recognition Motif (RRM) profile.	PTBP2_HUMAN	59-133 181-257 338-412 455-529	2	- - - - - D:338-412 - - - - - - - D:455-529 - - - -

Biological Unit 5 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RRM	PS50102	Eukaryotic RNA Recognition Motif (RRM) profile.	PTBP2_HUMAN	59-133 181-257 338-412 455-529	2	- - - - - - E:338-412 - - - - - - - E:455-529 - - -

Biological Unit 6 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RRM	PS50102	Eukaryotic RNA Recognition Motif (RRM) profile.	PTBP2_HUMAN	59-133 181-257 338-412 455-529	2	- - - - - - - F:338-412 - - - - - - - F:455-529 - -

Biological Unit 7 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RRM	PS50102	Eukaryotic RNA Recognition Motif (RRM) profile.	PTBP2_HUMAN	59-133 181-257 338-412 455-529	2	- - - - - - - - G:338-412 - - - - - - - G:455-529 -

Biological Unit 8 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	RRM	PS50102	Eukaryotic RNA Recognition Motif (RRM) profile.	PTBP2_HUMAN	59-133 181-257 338-412 455-529	2	- - - - - - - - - H:338-412 - - - - - - - H:455-529

(no "Exon" information available for 4CQ1)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:191
 aligned with PTBP2_HUMAN | Q9UKA9 from UniProtKB/Swiss-Prot  Length:531

    Alignment length:195
                                   346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526     
          PTBP2_HUMAN   337 NTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531
               SCOP domains d4cq1a1 A:337-444 automated matches                                                                         d4cq1a2 A:445-531 automated matches                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhh....eeeeeee..eeeeeeeee.hhhhhhhhhhhhh..ee..ee.eeee..........----....eee............hhhhh........eeeee......hhhhhhhhhhh....eeeeee......eeeee.hhhhhhhhhhhhh..eee..ee.eeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -RRM  PDB: A:338-412 UniProt: 338-412                                       ------------------------------------------RRM  PDB: A:455-529 UniProt: 455-529                                       -- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cq1 A 337 NTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPR----DQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531
                                   346       356       366       376       386       396       406       416  |    426       436       446       456       466       476       486       496       506       516       526     
                                                                                                            419  424

Chain B from PDB  Type:PROTEIN  Length:192
 aligned with PTBP2_HUMAN | Q9UKA9 from UniProtKB/Swiss-Prot  Length:531

    Alignment length:196
                                   345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525      
          PTBP2_HUMAN   336 GNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531
               SCOP domains d4cq1b1 B:336-444 automated matches                                                                          d4cq1b2 B:445-531 automated matches                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.......hhhhhhhhhh......eeeee..eeeeeeee..hhhhhhhhhhhhh..ee..ee.eeee..........----....eee............hhhhh........eeeee......hhhhhhhhhhh....eeeeee......eeeee.hhhhhhhhhhhhh..........eeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --RRM  PDB: B:338-412 UniProt: 338-412                                       ------------------------------------------RRM  PDB: B:455-529 UniProt: 455-529                                       -- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cq1 B 336 GNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPR----DQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531
                                   345       355       365       375       385       395       405       415   |   425       435       445       455       465       475       485       495       505       515       525      
                                                                                                             419  424

Chain C from PDB  Type:PROTEIN  Length:188
 aligned with PTBP2_HUMAN | Q9UKA9 from UniProtKB/Swiss-Prot  Length:531

    Alignment length:195
                                   346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526     
          PTBP2_HUMAN   337 NTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531
               SCOP domains d4cq1c1 C:337-444 automated matches                                                                         d4cq1c2 C:445-531 automated matches                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhh....eeeeee.......eeeee.hhhhhhhhhhhhh..ee..ee.eeee.........-------..eee.............hhhhhh......eeeee......hhhhhhhhhhh....eeeeee.....eeeeee.hhhhhhhhhhhhh..eee..ee.eeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -RRM  PDB: C:338-412 UniProt: 338-412                                       ------------------------------------------RRM  PDB: C:455-529 UniProt: 455-529                                       -- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cq1 C 337 NTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLP-------GLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531
                                   346       356       366       376       386       396       406       416 |     426       436       446       456       466       476       486       496       506       516       526     
                                                                                                           418     426

Chain D from PDB  Type:PROTEIN  Length:189
 aligned with PTBP2_HUMAN | Q9UKA9 from UniProtKB/Swiss-Prot  Length:531

    Alignment length:195
                                   346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526     
          PTBP2_HUMAN   337 NTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531
               SCOP domains d4cq1d1 D:337-444 automated matches                                                                         d4cq1d2 D:445-531 automated matches                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhh....eeeeeee..eeeeeeeee.hhhhhhhhhhhhh..ee..ee.eeee..........------..eee.............hhhhh.......eeeee......hhhhhhhhhhh....eeeeee......eeeee.hhhhhhhhhhhhh..........eeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -RRM  PDB: D:338-412 UniProt: 338-412                                       ------------------------------------------RRM  PDB: D:455-529 UniProt: 455-529                                       -- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cq1 D 337 NTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPR------GLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531
                                   346       356       366       376       386       396       406       416  |    426       436       446       456       466       476       486       496       506       516       526     
                                                                                                            419    426

Chain E from PDB  Type:PROTEIN  Length:189
 aligned with PTBP2_HUMAN | Q9UKA9 from UniProtKB/Swiss-Prot  Length:531

    Alignment length:195
                                   346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526     
          PTBP2_HUMAN   337 NTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531
               SCOP domains d4cq1e1 E:337-444 automated matches                                                                         d4cq1e2 E:445-531 automated matches                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhh....eeeeee.......eeeee.hhhhhhhhhhhhh..ee..ee.eeee..........------..eee............hhhhh........eeeee......hhhhhhhhhhh....eeeeee.....eeeeee.hhhhhhhhhhhhh..........eeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -RRM  PDB: E:338-412 UniProt: 338-412                                       ------------------------------------------RRM  PDB: E:455-529 UniProt: 455-529                                       -- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cq1 E 337 NTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPR------GLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531
                                   346       356       366       376       386       396       406       416  |    426       436       446       456       466       476       486       496       506       516       526     
                                                                                                            419    426

Chain F from PDB  Type:PROTEIN  Length:191
 aligned with PTBP2_HUMAN | Q9UKA9 from UniProtKB/Swiss-Prot  Length:531

    Alignment length:195
                                   346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526     
          PTBP2_HUMAN   337 NTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531
               SCOP domains d4cq1f1 F:337-444 automated matches                                                                         d4cq1f2 F:445-531 automated matches                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhh....eeeeeee..eeeeeeeee.hhhhhhhhhhhhh..ee..ee.eeee..........----....eee............hhhhh........eeeee......hhhhhhhhhhh....eeeeee......eeeee.hhhhhhhhhhhhh..eee..ee.eeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -RRM  PDB: F:338-412 UniProt: 338-412                                       ------------------------------------------RRM  PDB: F:455-529 UniProt: 455-529                                       -- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cq1 F 337 NTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPR----DQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531
                                   346       356       366       376       386       396       406       416  |    426       436       446       456       466       476       486       496       506       516       526     
                                                                                                            419  424

Chain G from PDB  Type:PROTEIN  Length:191
 aligned with PTBP2_HUMAN | Q9UKA9 from UniProtKB/Swiss-Prot  Length:531

    Alignment length:195
                                   346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526     
          PTBP2_HUMAN   337 NTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531
               SCOP domains d4cq1g1 G:337-444 automated matches                                                                         d4cq1g2 G:445-531 automated matches                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhh....eeeeeee..eeeeeeeee.hhhhhhhhhhhhh..ee..ee.eeee..........----....eee.............hhhhhh......eeeee......hhhhhhhhhhh....eeeeee.....eeeeee.hhhhhhhhhhhhh..........eeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -RRM  PDB: G:338-412 UniProt: 338-412                                       ------------------------------------------RRM  PDB: G:455-529 UniProt: 455-529                                       -- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cq1 G 337 NTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPR----DQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531
                                   346       356       366       376       386       396       406       416  |    426       436       446       456       466       476       486       496       506       516       526     
                                                                                                            419  424

Chain H from PDB  Type:PROTEIN  Length:191
 aligned with PTBP2_HUMAN | Q9UKA9 from UniProtKB/Swiss-Prot  Length:531

    Alignment length:195
                                   346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526     
          PTBP2_HUMAN   337 NTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531
               SCOP domains d4cq1h1 H:337-444 automated matches                                                                         d4cq1h2 H:445-531 automated matches                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhh....eeeeeee..eeeeeeeee.hhhhhhhhhhhhh..ee..ee.eeee..........----....eee.............hhhhhh......eeeee......hhhhhhhhhhh....eeeeee.....eeeeee.hhhhhhhhhhhhh..........eeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -RRM  PDB: H:338-412 UniProt: 338-412                                       ------------------------------------------RRM  PDB: H:455-529 UniProt: 455-529                                       -- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4cq1 H 337 NTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPR----DQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI 531
                                   346       356       366       376       386       396       406       416  |    426       436       446       456       466       476       486       496       506       516       526     
                                                                                                            419  424

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Ferredoxin-like (1795)

Superfamily: RNA-binding domain, RBD (289)

Family: automated matches (67)

Protein domain: automated matches (67)

Human (Homo sapiens) [TaxId: 9606] (56)

1a	d4cq1a2	A:445-531
1b	d4cq1g2	G:445-531
1c	d4cq1h2	H:445-531
1d	d4cq1b2	B:445-531
1e	d4cq1c2	C:445-531
1f	d4cq1d2	D:445-531
1g	d4cq1e2	E:445-531
1h	d4cq1f2	F:445-531

Family: Canonical RBD (214)

Protein domain: automated matches (24)

Human (Homo sapiens) [TaxId: 9606] (21)

2a	d4cq1a1	A:337-444
2b	d4cq1g1	G:337-444
2c	d4cq1h1	H:337-444
2d	d4cq1b1	B:336-444
2e	d4cq1c1	C:337-444
2f	d4cq1d1	D:337-444
2g	d4cq1e1	E:337-444
2h	d4cq1f1	F:337-444

(no "CATH Domain" information available for 4CQ1)

(no "Pfam Domain" information available for 4CQ1)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (PTBP2_HUMAN | Q9UKA9)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0003729	mRNA binding	Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
	GO:0003676	nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0036002	pre-mRNA binding	Interacting selectively and non-covalently with pre-messenger RNA (pre-mRNA), an intermediate molecule between DNA and protein that may contain introns and, at least in part, encodes one or more proteins. Introns are removed from pre-mRNA to form a mRNA molecule.
biological process
	GO:0008380	RNA splicing	The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
	GO:0021549	cerebellum development	The process whose specific outcome is the progression of the cerebellum over time, from its formation to the mature structure. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. In mice, the cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills.
	GO:0006397	mRNA processing	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
	GO:0006376	mRNA splice site selection	Selection of a splice site by components of the assembling spliceosome.
	GO:0033119	negative regulation of RNA splicing	Any process that stops, prevents, or reduces the frequency, rate or extent of RNA splicing.
	GO:2000177	regulation of neural precursor cell proliferation	Any process that modulates the frequency, rate or extent of neural precursor cell proliferation.
	GO:0021510	spinal cord development	The process whose specific outcome is the progression of the spinal cord over time, from its formation to the mature structure. The spinal cord primarily conducts sensory and motor nerve impulses between the brain and the peripheral nervous tissues.
cellular component
	GO:0030426	growth cone	The migrating motile tip of a growing nerve cell axon or dendrite.
	GO:0043025	neuronal cell body	The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0005681	spliceosomal complex	Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.

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	4cq1
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	PTBP2_HUMAN \| Q9UKA9	:	2cq1 2mju

(no "Related Entries Specified in the PDB File" available for 4CQ1)

Description

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Ligands, Modified Residues, Ions (2, 20)

Sites (20, 20)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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