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4CQ1
Biol. Unit 7
Info
Asym.Unit (256 KB)
Biol.Unit 1 (35 KB)
Biol.Unit 2 (36 KB)
Biol.Unit 3 (35 KB)
Biol.Unit 4 (35 KB)
Biol.Unit 5 (35 KB)
Biol.Unit 6 (35 KB)
Biol.Unit 7 (35 KB)
Biol.Unit 8 (36 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE NEURONAL ISOFORM OF PTB
Authors
:
A. Joshi, A. N. Buckroyd, S. Curry
Date
:
10 Feb 14 (Deposition) - 19 Feb 14 (Release) - 13 Jan 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.69
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Keywords
:
Translation, Rna Binding Protein, Nptb, Brptb
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Joshi, V. Esteve, A. N. Buckroyd, M. Blatter, F. H. -T. Allain, S. Curry
Solution And Crystal Structures Of A C Terminal Fragment Of The Neuronal Isoform Of The Polypyrimidine Tract Binding Protein (Nptb)
Peerj V. 2 E305 2014
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
2i: ZINC ION (ZNi)
2j: ZINC ION (ZNj)
2k: ZINC ION (ZNk)
2l: ZINC ION (ZNl)
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Sites
(5, 5)
Info
All Sites
1: AC9 (SOFTWARE)
2: BC1 (SOFTWARE)
3: BC4 (SOFTWARE)
4: BC5 (SOFTWARE)
5: CC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC9
SOFTWARE
HIS E:412 , CL E:1533 , HOH E:2047 , HIS G:491
BINDING SITE FOR RESIDUE ZN E1532
2
BC1
SOFTWARE
LEU E:371 , ZN E:1532 , HIS G:491
BINDING SITE FOR RESIDUE CL E1533
3
BC4
SOFTWARE
HIS E:491 , HIS G:412 , CL G:1533 , HOH G:2047
BINDING SITE FOR RESIDUE ZN G1532
4
BC5
SOFTWARE
HIS E:491 , HIS G:412 , ZN G:1532
BINDING SITE FOR RESIDUE CL G1533
5
CC2
SOFTWARE
HIS F:520 , HIS G:520
BINDING SITE FOR RESIDUE ZN F1536
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RRM (G:338-412,G:455-529)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
PTBP2_HUMAN
59-133
181-257
338-412
455-529
2
-
-
-
-
-
-
-
-
G:338-412
-
-
-
-
-
-
-
G:455-529
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d4cq1a2 (A:445-531)
1b: SCOP_d4cq1g2 (G:445-531)
1c: SCOP_d4cq1h2 (H:445-531)
1d: SCOP_d4cq1b2 (B:445-531)
1e: SCOP_d4cq1c2 (C:445-531)
1f: SCOP_d4cq1d2 (D:445-531)
1g: SCOP_d4cq1e2 (E:445-531)
1h: SCOP_d4cq1f2 (F:445-531)
2a: SCOP_d4cq1a1 (A:337-444)
2b: SCOP_d4cq1g1 (G:337-444)
2c: SCOP_d4cq1h1 (H:337-444)
2d: SCOP_d4cq1b1 (B:336-444)
2e: SCOP_d4cq1c1 (C:337-444)
2f: SCOP_d4cq1d1 (D:337-444)
2g: SCOP_d4cq1e1 (E:337-444)
2h: SCOP_d4cq1f1 (F:337-444)
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Classes
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
automated matches
(67)
Protein domain
:
automated matches
(67)
Human (Homo sapiens) [TaxId: 9606]
(56)
1a
d4cq1a2
A:445-531
1b
d4cq1g2
G:445-531
1c
d4cq1h2
H:445-531
1d
d4cq1b2
B:445-531
1e
d4cq1c2
C:445-531
1f
d4cq1d2
D:445-531
1g
d4cq1e2
E:445-531
1h
d4cq1f2
F:445-531
Family
:
Canonical RBD
(214)
Protein domain
:
automated matches
(24)
Human (Homo sapiens) [TaxId: 9606]
(21)
2a
d4cq1a1
A:337-444
2b
d4cq1g1
G:337-444
2c
d4cq1h1
H:337-444
2d
d4cq1b1
B:336-444
2e
d4cq1c1
C:337-444
2f
d4cq1d1
D:337-444
2g
d4cq1e1
E:337-444
2h
d4cq1f1
F:337-444
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CATH Domains
(0, 0)
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Pfam Domains
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Chain G
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (256 KB)
Header - Asym.Unit
Biol.Unit 1 (35 KB)
Header - Biol.Unit 1
Biol.Unit 2 (36 KB)
Header - Biol.Unit 2
Biol.Unit 3 (35 KB)
Header - Biol.Unit 3
Biol.Unit 4 (35 KB)
Header - Biol.Unit 4
Biol.Unit 5 (35 KB)
Header - Biol.Unit 5
Biol.Unit 6 (35 KB)
Header - Biol.Unit 6
Biol.Unit 7 (35 KB)
Header - Biol.Unit 7
Biol.Unit 8 (36 KB)
Header - Biol.Unit 8
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