4CPR - JenaLib

Asym./Biol. Unit (Jmol Viewer)

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Title :   MACROCYCLIC TRANSITION-STATE MIMICKING HIV-1 PROTEASE INHIBITORS ENCOMPASSING A TERTIARY ALCOHOL

Authors :   M. Derosa, J. Unge, H. V. Motwani, A. Rosenquist, L. Vrang, H. Wallberg,

Date :   08 Feb 14 (Deposition) - 17 Dec 14 (Release) - 17 Dec 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A,B

Keywords :   Hydrolase, Inhibitor, Rational Drug Design (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. De Rosa, J. Unge, H. V. Motwani, A. Rosenquist, L. Vrang, H. Wallberg, M. Larhed
Synthesis Of P1'-Functionalized Macrocyclic Transition- State Mimicking Hiv-1 Protease Inhibitors Encompassing A Tertiary Alcohol.
J. Med. Chem. V. 57 6444 2014
PubMed-ID: 25054811 | Reference-DOI: 10.1021/JM500434Q

Molecule 1 - PROTEASE
	Atcc	:	11676
	Chains	:	A, B
	EC Number	:	3.4.23.16
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PEXP5
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Variant	:	AI
	Expression System Vector Type	:	PLASMID
	Mutation	:	YES
	Organism Scientific	:	HUMAN IMMUNODEFICIENCY VIRUS
	Organism Taxid	:	12721
	Strain	:	99HHP1 (D10)
	Synonym	:	PR, RETROPEPSIN
	Variant	:	Z2/CDC-Z34 ISOLATE

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 4)

No.	Name	Count	Type	Full Name
1	378	1	Ligand/Ion	METHYL ((S)-1-(2-((R)-5-(((S)-1-(ALLYLAMINO)-3-METHYL-1-OXOBUTAN-2-YL)AMINO)-4-(4-ALLYLBENZYL)-4-HYDROXY-5-OXOPENTYL)-2-(4-(THIOPHEN-2-YL)BENZYL)HYDRAZINYL)-3,3-DIMETHYL-1-OXOBUTAN-2-YL)CARBAMATE
2	CL	3	Ligand/Ion	CHLORIDE ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TRP B:106 , HOH B:2089	BINDING SITE FOR RESIDUE CL B1200
2	AC2	SOFTWARE	THR A:74 , ASN A:88 , ARG B:141	BINDING SITE FOR RESIDUE CL A1100
3	AC3	SOFTWARE	THR B:174 , ASN B:188 , HOH B:2105	BINDING SITE FOR RESIDUE CL B1201
4	AC4	SOFTWARE	ARG A:8 , ASP A:25 , GLY A:27 , ALA A:28 , ASP A:29 , ASP A:30 , GLY A:48 , GLY A:49 , ILE A:50 , PRO A:81 , THR A:82 , HOH A:2038 , HOH A:2069 , HOH A:2089 , HOH A:2090 , HOH A:2150 , HOH A:2151 , ARG B:108 , LEU B:123 , ASP B:125 , GLY B:127 , ALA B:128 , ASP B:129 , GLY B:148 , GLY B:149 , PHE B:153 , PRO B:181 , THR B:182	BINDING SITE FOR RESIDUE 378 A1101

(no "SS Bond" information available for 4CPR)

(no "Cis Peptide Bond" information available for 4CPR)

(no "SAP(SNP)/Variant" information available for 4CPR)

Asymmetric/Biological Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ASP_PROT_RETROV	PS50175	Aspartyl protease, retroviral-type family profile.	POL_HV1B1	520-589	2	A:20-89 B:120-189
2	ASP_PROTEASE	PS00141	Eukaryotic and viral aspartyl proteases active site.	POL_HV1B1	522-533	2	A:22-33 B:122-133

(no "Exon" information available for 4CPR)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:99
                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee......eeeeee..eeeeeee......eee..................eeeeeeeeeeeeeee..eeeeeeeee......eehhhhhh....eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 4cpr A   1 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPTNVIGRNLLTQIGCTLNF  99
                                    10        20        30        40        50        60        70        80        90

Chain B from PDB  Type:PROTEIN  Length:99
                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee......eeeeee..eeeeeee.......ee..................eeeeeeeeeeeeeee..eeeeeeeee......eehhhhhh....eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 4cpr B 101 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPTNVIGRNLLTQIGCTLNF 199
                                   110       120       130       140       150       160       170       180       190

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4CPR)

(no "CATH Domain" information available for 4CPR)

(no "Pfam Domain" information available for 4CPR)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
		378	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4cpr)

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	4cpr
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	3.4.23.16
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4cpq	MACROCYCLIC TRANSITION-STATE MIMICKING HIV-1 PROTEASE INHIBITORS ENCOMPASSING A TERTIARY ALCOHOL
4cps	MACROCYCLIC TRANSITION-STATE MIMICKING HIV-1 PROTEASE INHIBITORS ENCOMPASSING A TERTIARY ALCOHOL
4cpt	MACROCYCLIC TRANSITION-STATE MIMICKING HIV-1 PROTEASE INHIBITORS ENCOMPASSING A TERTIARY ALCOHOL
4cpu	MACROCYCLIC TRANSITION-STATE MIMICKING HIV-1 PROTEASE INHIBITORS ENCOMPASSING A TERTIARY ALCOHOL
4cpw	MACROCYCLIC TRANSITION-STATE MIMICKING HIV-1 PROTEASE INHIBITORS ENCOMPASSING A TERTIARY ALCOHOL
4cpx	MACROCYCLIC TRANSITION-STATE MIMICKING HIV-1 PROTEASE INHIBITORS ENCOMPASSING A TERTIARY ALCOHOL

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 4)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (45, 45)

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