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(-) Description

Title :  NOTCH LIGAND, JAGGED-1, CONTAINS AN N-TERMINAL C2 DOMAIN
 
Authors :  C. R. Chilakuri, D. Sheppard, M. X. G. Ilagan, L. R. Holt, F. Abbott, S. Li R. Kopan, P. A. Handford, S. M. Lea
Date :  17 Oct 13  (Deposition) - 27 Nov 13  (Release) - 25 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.84
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Signaling Protein, Glycoprotein, Extracellular, Developmental Protein, Notch Signaling Pathway, Egf, Dsl, Lipid, Notch, Membrane, Protein-Binding, Transmembrane, Egf-Like Domain, Disease Mutation (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. R. Chilakuri, D. Sheppard, M. X. G. Ilagan, L. R. Holt, F. Abbott, S. Liang, R. Kopan, P. A. Handford, S. M. Lea
Structural Analysis Uncovers Lipid-Binding Properties Of Notch Ligands
Cell Rep. V. 5 861 2013
PubMed-ID: 24239355  |  Reference-DOI: 10.1016/J.CELREP.2013.10.029

(-) Compounds

Molecule 1 - PROTEIN JAGGED-1
    ChainsA, B
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System Cell LineHEK 293S
    Expression System Taxid9606
    FragmentRESIDUES 32-335
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsNAG LINKAGE AT N217 IN BOTH A, B CHAINS, FUC LINKAGE AT T311 IN A CHAIN
    SynonymJAGGED1, HJ1, CD339

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)A 
Biological Unit 2 (1x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 13)

Asymmetric Unit (5, 13)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2CL6Ligand/IonCHLORIDE ION
3EDO2Ligand/Ion1,2-ETHANEDIOL
4FUC1Ligand/IonALPHA-L-FUCOSE
5NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3EDO-1Ligand/Ion1,2-ETHANEDIOL
4FUC1Ligand/IonALPHA-L-FUCOSE
5NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3EDO2Ligand/Ion1,2-ETHANEDIOL
4FUC-1Ligand/IonALPHA-L-FUCOSE
5NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:72 , ASP A:140 , SER A:141BINDING SITE FOR RESIDUE CA A1340
02AC2SOFTWAREASN A:230BINDING SITE FOR RESIDUE CL A1341
03AC3SOFTWARESER A:41 , HIS A:178BINDING SITE FOR RESIDUE CL A1342
04AC4SOFTWARESER A:158BINDING SITE FOR RESIDUE CL A1343
05AC5SOFTWAREARG A:203 , PHE A:207 , MET B:160BINDING SITE FOR RESIDUE CL A1344
06AC6SOFTWAREASP B:72 , ASP B:140 , SER B:141 , SER B:142 , HOH B:2001BINDING SITE FOR RESIDUE CA B1339
07AC7SOFTWAREGLU B:228 , ASN B:230BINDING SITE FOR RESIDUE CL B1340
08AC8SOFTWARESER B:41 , ASN B:173 , HIS B:178 , PHE B:179 , GLU B:180 , PHE B:206BINDING SITE FOR RESIDUE EDO B1341
09AC9SOFTWAREGLY A:62 , ARG A:64 , ASN B:53 , GLY B:57 , ALA B:58 , ARG B:59BINDING SITE FOR RESIDUE EDO B1342
10BC1SOFTWARESER A:164BINDING SITE FOR RESIDUE CL B1343
11BC2SOFTWAREASN A:215 , ASN A:217BINDING SITE FOR MONO-SACCHARIDE NAG A1338 BOUND TO ASN A 217
12BC3SOFTWAREGLY A:309 , THR A:311 , SER A:323BINDING SITE FOR MONO-SACCHARIDE FUC A1339 BOUND TO THR A 311
13BC4SOFTWAREASN B:217 , GLN B:291BINDING SITE FOR MONO-SACCHARIDE NAG B1338 BOUND TO ASN B 217

(-) SS Bonds  (30, 30)

Asymmetric Unit
No.Residues
1A:54 -A:66
2A:55 -A:71
3A:78 -A:92
4A:187 -A:196
5A:200 -A:212
6A:220 -A:229
7A:234 -A:245
8A:238 -A:251
9A:253 -A:262
10A:265 -A:276
11A:271 -A:282
12A:284 -A:293
13A:300 -A:312
14A:306 -A:322
15A:324 -A:333
16B:54 -B:66
17B:55 -B:71
18B:78 -B:92
19B:187 -B:196
20B:200 -B:212
21B:220 -B:229
22B:234 -B:245
23B:238 -B:251
24B:253 -B:262
25B:265 -B:276
26B:271 -B:282
27B:284 -B:293
28B:300 -B:312
29B:306 -B:322
30B:324 -B:333

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4CC1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (43, 86)

Asymmetric Unit (43, 86)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_026298G33DJAG1_HUMANDisease (ALGS1)  ---A/BG33D
02UniProtVAR_026299G33SJAG1_HUMANDisease (ALGS1)876661123A/BG33S
03UniProtVAR_026300G33VJAG1_HUMANDisease (ALGS1)  ---A/BG33V
04UniProtVAR_013186L37SJAG1_HUMANDisease (ALGS1)121918352A/BL37S
05UniProtVAR_026301I39SJAG1_HUMANDisease (ALGS1)  ---A/BI39S
06UniProtVAR_026302L40PJAG1_HUMANDisease (ALGS1)  ---A/BL40P
07UniProtVAR_026303V45LJAG1_HUMANPolymorphism183974372A/BV45L
08UniProtVAR_026304N53DJAG1_HUMANUnclassified  ---A/BN53D
09UniProtVAR_026305K65MJAG1_HUMANUnclassified  ---A/BK65M
10UniProtVAR_026306F75SJAG1_HUMANDisease (ALGS1)  ---A/BF75S
11UniProtVAR_026307C78SJAG1_HUMANDisease (ALGS1)  ---A/BC78S
12UniProtVAR_013187L79HJAG1_HUMANDisease (ALGS1)  ---A/BL79H
13UniProtVAR_026308C92RJAG1_HUMANDisease (ALGS1)  ---A/BC92R
14UniProtVAR_026309C92YJAG1_HUMANDisease (ALGS1)  ---A/BC92Y
15UniProtVAR_026310I120NJAG1_HUMANDisease (ALGS1)  ---A/BI120N
16UniProtVAR_026311P123SJAG1_HUMANDisease (ALGS1)  ---A/BP123S
17UniProtVAR_013188A127TJAG1_HUMANDisease (ALGS1)  ---A/BA127T
18UniProtVAR_013189P129RJAG1_HUMANDisease (ALGS1)  ---A/BP129R
19UniProtVAR_048985V146IJAG1_HUMANPolymorphism6040067A/BV146I
20UniProtVAR_013190I152TJAG1_HUMANDisease (ALGS1)  ---A/BI152T
21UniProtVAR_026312A155PJAG1_HUMANDisease (ALGS1)  ---A/BA155P
22UniProtVAR_013191P163LJAG1_HUMANDisease (ALGS1)  ---A/BP163L
23UniProtVAR_026313P163RJAG1_HUMANDisease (ALGS1)  ---A/BP163R
24UniProtVAR_026314Y181NJAG1_HUMANDisease (ALGS1)  ---A/BY181N
25UniProtVAR_013192R184CJAG1_HUMANDisease (ALGS1)121918350A/BR184C
26UniProtVAR_013193R184GJAG1_HUMANDisease (ALGS1)  ---A/BR184G
27UniProtVAR_013194R184HJAG1_HUMANDisease (ALGS1)121918351A/BR184H
28UniProtVAR_013195R184LJAG1_HUMANDisease (ALGS1)  ---A/BR184L
29UniProtVAR_013196C187SJAG1_HUMANDisease (ALGS1)  ---A/BC187S
30UniProtVAR_026315C187YJAG1_HUMANDisease (ALGS1)  ---A/BC187Y
31UniProtVAR_026316R203KJAG1_HUMANUnclassified  ---A/BR203K
32UniProtVAR_013197C220FJAG1_HUMANDisease (ALGS1)  ---A/BC220F
33UniProtVAR_026317W224CJAG1_HUMANDisease (ALGS1)  ---A/BW224C
34UniProtVAR_013198C229GJAG1_HUMANDisease (ALGS1)  ---A/BC229G
35UniProtVAR_013199C229YJAG1_HUMANDisease (ALGS1)  ---A/BC229Y
36UniProtVAR_026318C234YJAG1_HUMANPolymorphism121918353A/BC234Y
37UniProtVAR_026319R252GJAG1_HUMANDisease (ALGS1)  ---A/BR252G
38UniProtVAR_026320G256SJAG1_HUMANDisease (ALGS1)  ---A/BG256S
39UniProtVAR_026321P269LJAG1_HUMANDisease (ALGS1)797044956A/BP269L
40UniProtVAR_026322C271RJAG1_HUMANDisease (ALGS1)  ---A/BC271R
41UniProtVAR_013200G274DJAG1_HUMANDisease (TOF)28939668A/BG274D
42UniProtVAR_013201C284FJAG1_HUMANDisease (ALGS1)  ---A/BC284F
43UniProtVAR_013202W288CJAG1_HUMANDisease (ALGS1)  ---A/BW288C

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (43, 43)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_026298G33DJAG1_HUMANDisease (ALGS1)  ---AG33D
02UniProtVAR_026299G33SJAG1_HUMANDisease (ALGS1)876661123AG33S
03UniProtVAR_026300G33VJAG1_HUMANDisease (ALGS1)  ---AG33V
04UniProtVAR_013186L37SJAG1_HUMANDisease (ALGS1)121918352AL37S
05UniProtVAR_026301I39SJAG1_HUMANDisease (ALGS1)  ---AI39S
06UniProtVAR_026302L40PJAG1_HUMANDisease (ALGS1)  ---AL40P
07UniProtVAR_026303V45LJAG1_HUMANPolymorphism183974372AV45L
08UniProtVAR_026304N53DJAG1_HUMANUnclassified  ---AN53D
09UniProtVAR_026305K65MJAG1_HUMANUnclassified  ---AK65M
10UniProtVAR_026306F75SJAG1_HUMANDisease (ALGS1)  ---AF75S
11UniProtVAR_026307C78SJAG1_HUMANDisease (ALGS1)  ---AC78S
12UniProtVAR_013187L79HJAG1_HUMANDisease (ALGS1)  ---AL79H
13UniProtVAR_026308C92RJAG1_HUMANDisease (ALGS1)  ---AC92R
14UniProtVAR_026309C92YJAG1_HUMANDisease (ALGS1)  ---AC92Y
15UniProtVAR_026310I120NJAG1_HUMANDisease (ALGS1)  ---AI120N
16UniProtVAR_026311P123SJAG1_HUMANDisease (ALGS1)  ---AP123S
17UniProtVAR_013188A127TJAG1_HUMANDisease (ALGS1)  ---AA127T
18UniProtVAR_013189P129RJAG1_HUMANDisease (ALGS1)  ---AP129R
19UniProtVAR_048985V146IJAG1_HUMANPolymorphism6040067AV146I
20UniProtVAR_013190I152TJAG1_HUMANDisease (ALGS1)  ---AI152T
21UniProtVAR_026312A155PJAG1_HUMANDisease (ALGS1)  ---AA155P
22UniProtVAR_013191P163LJAG1_HUMANDisease (ALGS1)  ---AP163L
23UniProtVAR_026313P163RJAG1_HUMANDisease (ALGS1)  ---AP163R
24UniProtVAR_026314Y181NJAG1_HUMANDisease (ALGS1)  ---AY181N
25UniProtVAR_013192R184CJAG1_HUMANDisease (ALGS1)121918350AR184C
26UniProtVAR_013193R184GJAG1_HUMANDisease (ALGS1)  ---AR184G
27UniProtVAR_013194R184HJAG1_HUMANDisease (ALGS1)121918351AR184H
28UniProtVAR_013195R184LJAG1_HUMANDisease (ALGS1)  ---AR184L
29UniProtVAR_013196C187SJAG1_HUMANDisease (ALGS1)  ---AC187S
30UniProtVAR_026315C187YJAG1_HUMANDisease (ALGS1)  ---AC187Y
31UniProtVAR_026316R203KJAG1_HUMANUnclassified  ---AR203K
32UniProtVAR_013197C220FJAG1_HUMANDisease (ALGS1)  ---AC220F
33UniProtVAR_026317W224CJAG1_HUMANDisease (ALGS1)  ---AW224C
34UniProtVAR_013198C229GJAG1_HUMANDisease (ALGS1)  ---AC229G
35UniProtVAR_013199C229YJAG1_HUMANDisease (ALGS1)  ---AC229Y
36UniProtVAR_026318C234YJAG1_HUMANPolymorphism121918353AC234Y
37UniProtVAR_026319R252GJAG1_HUMANDisease (ALGS1)  ---AR252G
38UniProtVAR_026320G256SJAG1_HUMANDisease (ALGS1)  ---AG256S
39UniProtVAR_026321P269LJAG1_HUMANDisease (ALGS1)797044956AP269L
40UniProtVAR_026322C271RJAG1_HUMANDisease (ALGS1)  ---AC271R
41UniProtVAR_013200G274DJAG1_HUMANDisease (TOF)28939668AG274D
42UniProtVAR_013201C284FJAG1_HUMANDisease (ALGS1)  ---AC284F
43UniProtVAR_013202W288CJAG1_HUMANDisease (ALGS1)  ---AW288C

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (43, 43)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_026298G33DJAG1_HUMANDisease (ALGS1)  ---BG33D
02UniProtVAR_026299G33SJAG1_HUMANDisease (ALGS1)876661123BG33S
03UniProtVAR_026300G33VJAG1_HUMANDisease (ALGS1)  ---BG33V
04UniProtVAR_013186L37SJAG1_HUMANDisease (ALGS1)121918352BL37S
05UniProtVAR_026301I39SJAG1_HUMANDisease (ALGS1)  ---BI39S
06UniProtVAR_026302L40PJAG1_HUMANDisease (ALGS1)  ---BL40P
07UniProtVAR_026303V45LJAG1_HUMANPolymorphism183974372BV45L
08UniProtVAR_026304N53DJAG1_HUMANUnclassified  ---BN53D
09UniProtVAR_026305K65MJAG1_HUMANUnclassified  ---BK65M
10UniProtVAR_026306F75SJAG1_HUMANDisease (ALGS1)  ---BF75S
11UniProtVAR_026307C78SJAG1_HUMANDisease (ALGS1)  ---BC78S
12UniProtVAR_013187L79HJAG1_HUMANDisease (ALGS1)  ---BL79H
13UniProtVAR_026308C92RJAG1_HUMANDisease (ALGS1)  ---BC92R
14UniProtVAR_026309C92YJAG1_HUMANDisease (ALGS1)  ---BC92Y
15UniProtVAR_026310I120NJAG1_HUMANDisease (ALGS1)  ---BI120N
16UniProtVAR_026311P123SJAG1_HUMANDisease (ALGS1)  ---BP123S
17UniProtVAR_013188A127TJAG1_HUMANDisease (ALGS1)  ---BA127T
18UniProtVAR_013189P129RJAG1_HUMANDisease (ALGS1)  ---BP129R
19UniProtVAR_048985V146IJAG1_HUMANPolymorphism6040067BV146I
20UniProtVAR_013190I152TJAG1_HUMANDisease (ALGS1)  ---BI152T
21UniProtVAR_026312A155PJAG1_HUMANDisease (ALGS1)  ---BA155P
22UniProtVAR_013191P163LJAG1_HUMANDisease (ALGS1)  ---BP163L
23UniProtVAR_026313P163RJAG1_HUMANDisease (ALGS1)  ---BP163R
24UniProtVAR_026314Y181NJAG1_HUMANDisease (ALGS1)  ---BY181N
25UniProtVAR_013192R184CJAG1_HUMANDisease (ALGS1)121918350BR184C
26UniProtVAR_013193R184GJAG1_HUMANDisease (ALGS1)  ---BR184G
27UniProtVAR_013194R184HJAG1_HUMANDisease (ALGS1)121918351BR184H
28UniProtVAR_013195R184LJAG1_HUMANDisease (ALGS1)  ---BR184L
29UniProtVAR_013196C187SJAG1_HUMANDisease (ALGS1)  ---BC187S
30UniProtVAR_026315C187YJAG1_HUMANDisease (ALGS1)  ---BC187Y
31UniProtVAR_026316R203KJAG1_HUMANUnclassified  ---BR203K
32UniProtVAR_013197C220FJAG1_HUMANDisease (ALGS1)  ---BC220F
33UniProtVAR_026317W224CJAG1_HUMANDisease (ALGS1)  ---BW224C
34UniProtVAR_013198C229GJAG1_HUMANDisease (ALGS1)  ---BC229G
35UniProtVAR_013199C229YJAG1_HUMANDisease (ALGS1)  ---BC229Y
36UniProtVAR_026318C234YJAG1_HUMANPolymorphism121918353BC234Y
37UniProtVAR_026319R252GJAG1_HUMANDisease (ALGS1)  ---BR252G
38UniProtVAR_026320G256SJAG1_HUMANDisease (ALGS1)  ---BG256S
39UniProtVAR_026321P269LJAG1_HUMANDisease (ALGS1)797044956BP269L
40UniProtVAR_026322C271RJAG1_HUMANDisease (ALGS1)  ---BC271R
41UniProtVAR_013200G274DJAG1_HUMANDisease (TOF)28939668BG274D
42UniProtVAR_013201C284FJAG1_HUMANDisease (ALGS1)  ---BC284F
43UniProtVAR_013202W288CJAG1_HUMANDisease (ALGS1)  ---BW288C

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (4, 14)

Asymmetric Unit (4, 14)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DSLPS51051 DSL domain profile.JAG1_HUMAN185-229
 
  2A:185-229
B:185-229
2EGF_3PS50026 EGF-like domain profile.JAG1_HUMAN230-263
 
296-334
 
336-372
374-410
412-448
450-485
487-523
525-561
586-627
629-665
667-703
705-741
744-780
782-818
820-856
  4A:230-263
B:230-263
A:296-334
B:296-334
-
-
-
-
-
-
-
-
-
-
-
-
-
3EGF_1PS00022 EGF-like domain signature 1.JAG1_HUMAN251-262
 
282-293
 
322-333
 
360-371
398-409
436-447
473-484
511-522
549-560
615-626
653-664
691-702
729-740
768-779
806-817
844-855
  6A:251-262
B:251-262
A:282-293
B:282-293
A:322-333
B:322-333
-
-
-
-
-
-
-
-
-
-
-
-
-
4EGF_2PS01186 EGF-like domain signature 2.JAG1_HUMAN251-265
 
322-333
 
360-371
436-447
473-484
511-522
615-626
653-664
691-702
729-740
768-779
806-817
  4A:251-265
B:251-265
A:322-333
B:322-333
-
-
-
-
-
-
-
-
-
-
Biological Unit 1 (4, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DSLPS51051 DSL domain profile.JAG1_HUMAN185-229
 
  1A:185-229
-
2EGF_3PS50026 EGF-like domain profile.JAG1_HUMAN230-263
 
296-334
 
336-372
374-410
412-448
450-485
487-523
525-561
586-627
629-665
667-703
705-741
744-780
782-818
820-856
  2A:230-263
-
A:296-334
-
-
-
-
-
-
-
-
-
-
-
-
-
-
3EGF_1PS00022 EGF-like domain signature 1.JAG1_HUMAN251-262
 
282-293
 
322-333
 
360-371
398-409
436-447
473-484
511-522
549-560
615-626
653-664
691-702
729-740
768-779
806-817
844-855
  3A:251-262
-
A:282-293
-
A:322-333
-
-
-
-
-
-
-
-
-
-
-
-
-
-
4EGF_2PS01186 EGF-like domain signature 2.JAG1_HUMAN251-265
 
322-333
 
360-371
436-447
473-484
511-522
615-626
653-664
691-702
729-740
768-779
806-817
  2A:251-265
-
A:322-333
-
-
-
-
-
-
-
-
-
-
-
Biological Unit 2 (4, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DSLPS51051 DSL domain profile.JAG1_HUMAN185-229
 
  1-
B:185-229
2EGF_3PS50026 EGF-like domain profile.JAG1_HUMAN230-263
 
296-334
 
336-372
374-410
412-448
450-485
487-523
525-561
586-627
629-665
667-703
705-741
744-780
782-818
820-856
  2-
B:230-263
-
B:296-334
-
-
-
-
-
-
-
-
-
-
-
-
-
3EGF_1PS00022 EGF-like domain signature 1.JAG1_HUMAN251-262
 
282-293
 
322-333
 
360-371
398-409
436-447
473-484
511-522
549-560
615-626
653-664
691-702
729-740
768-779
806-817
844-855
  3-
B:251-262
-
B:282-293
-
B:322-333
-
-
-
-
-
-
-
-
-
-
-
-
-
4EGF_2PS01186 EGF-like domain signature 2.JAG1_HUMAN251-265
 
322-333
 
360-371
436-447
473-484
511-522
615-626
653-664
691-702
729-740
768-779
806-817
  2-
B:251-265
-
B:322-333
-
-
-
-
-
-
-
-
-
-

(-) Exons   (0, 0)

(no "Exon" information available for 4CC1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:306
 aligned with JAG1_HUMAN | P78504 from UniProtKB/Swiss-Prot  Length:1218

    Alignment length:306
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331      
           JAG1_HUMAN    32 SGQFELEILSMQNVNGELQNGNCCGGARNPGDRKCTRDECDTYFKVCLKEYQSRVTAGGPCSFGSGSTPVIGGNTFNLKASRGNDRNRIVLPFSFAWPRSYTLLVEAWDSSNDTVQPDSIIEKASHSGMINPSRQWQTLKQNTGVAHFEYQIRVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCIPHPGCVHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEIAE 337
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeee.............................eeeeeeee..............eeee........ee..........eeeeee......eeeeeeeeee.........eeeeeeeeeee...eeeeeeeee.....eeeeeeeeee...ee.....ee...eee..eeeee.....eee...ee.....ee..........ee.......ee...ee.....ee........ee.......ee...ee.....ee.hhhhhhh......eeeeee..eeeee.............. Sec.struct. author
             SAPs(SNPs) (1) -D---S-SP----L-------D-----------M---------S--SH------------R---------------------------N--S---T-R----------------I-----T--P-------L-----------------N--C--S---------------K----------------F---C----G----Y-----------------G---S------------L-R--D---------F---C------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -S----------------------------------------------------------Y----------------------------------------------------------------------R--------------------G--Y-----------------------------------------Y------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
             SAPs(SNPs) (3) -V------------------------------------------------------------------------------------------------------------------------------------------------------H--------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
             SAPs(SNPs) (4) --------------------------------------------------------------------------------------------------------------------------------------------------------L--------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (4)
                PROSITE (1) ---------------------------------------------------------------------------------------------------------------------------------------------------------DSL  PDB: A:185-229 UniProt: 185-229         EGF_3  PDB: A:230-263             ------------------EGF_1       --EGF_3  PDB: A:296-334 UniProt: 296-334 -EG PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGF_1       -----------------------------------------------------------EGF_1       ---- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGF_2          --------------------------------------------------------EGF_2       ---- PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4cc1 A  32 SGQFELEILSMQNVNGELQNGNCCGGARNPGDRKCTRDECDTYFKVCLKEYQSRVTAGGPCSFGSGSTPVIGGNTFNLKASRGNDRNRIVLPFSFAWPRSYTLLVEAWDSSNDTVQPDSIIEKASHSGMINPSRQWQTLKQNTGVAHFEYQIRVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCIPHPGCVHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEIVD 337
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331      

Chain B from PDB  Type:PROTEIN  Length:306
 aligned with JAG1_HUMAN | P78504 from UniProtKB/Swiss-Prot  Length:1218

    Alignment length:306
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331      
           JAG1_HUMAN    32 SGQFELEILSMQNVNGELQNGNCCGGARNPGDRKCTRDECDTYFKVCLKEYQSRVTAGGPCSFGSGSTPVIGGNTFNLKASRGNDRNRIVLPFSFAWPRSYTLLVEAWDSSNDTVQPDSIIEKASHSGMINPSRQWQTLKQNTGVAHFEYQIRVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCIPHPGCVHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEIAE 337
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeee.............................eeeeeeeee.............eeee........ee..........eeeeee......eeeeeeeeee.........eeeeeeeeeee...eeeeeeeee.....eeeeeeeeee...ee.....ee...eee..eeeee.....eee...ee.....ee..........ee.......ee...ee.....ee........ee.......ee...ee.....ee.hhhhhhh......eeeeee..eeeee.............. Sec.struct. author
             SAPs(SNPs) (1) -D---S-SP----L-------D-----------M---------S--SH------------R---------------------------N--S---T-R----------------I-----T--P-------L-----------------N--C--S---------------K----------------F---C----G----Y-----------------G---S------------L-R--D---------F---C------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -S----------------------------------------------------------Y----------------------------------------------------------------------R--------------------G--Y-----------------------------------------Y------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
             SAPs(SNPs) (3) -V------------------------------------------------------------------------------------------------------------------------------------------------------H--------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
             SAPs(SNPs) (4) --------------------------------------------------------------------------------------------------------------------------------------------------------L--------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (4)
                PROSITE (1) ---------------------------------------------------------------------------------------------------------------------------------------------------------DSL  PDB: B:185-229 UniProt: 185-229         EGF_3  PDB: B:230-263             ------------------EGF_1       --EGF_3  PDB: B:296-334 UniProt: 296-334 -EG PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGF_1       -----------------------------------------------------------EGF_1       ---- PROSITE (2)
                PROSITE (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGF_2          --------------------------------------------------------EGF_2       ---- PROSITE (3)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4cc1 B  32 SGQFELEILSMQNVNGELQNGNCCGGARNPGDRKCTRDECDTYFKVCLKEYQSRVTAGGPCSFGSGSTPVIGGNTFNLKASRGNDRNRIVLPFSFAWPRSYTLLVEAWDSSNDTVQPDSIIEKASHSGMINPSRQWQTLKQNTGVAHFEYQIRVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPGDCRCQYGWQGLYCDKCIPHPGCVHGICNEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEIVD 337
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CC1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CC1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CC1)

(-) Gene Ontology  (56, 56)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (JAG1_HUMAN | P78504)
molecular function
    GO:0005112    Notch binding    Interacting selectively and non-covalently with the Notch (N) protein, a surface receptor.
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0008083    growth factor activity    The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0007220    Notch receptor processing    The series of successive proteolytic cleavages of the Notch protein, which result in an active form of the receptor.
    GO:0061314    Notch signaling involved in heart development    The series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell and contributing to the progression of the heart over time.
    GO:0007219    Notch signaling pathway    A series of molecular signals initiated by the binding of an extracellular ligand to the receptor Notch on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0002456    T cell mediated immunity    Any process involved in the carrying out of an immune response by a T cell.
    GO:0001525    angiogenesis    Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels.
    GO:0009887    animal organ morphogenesis    Morphogenesis of an animal organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process in which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.
    GO:0035909    aorta morphogenesis    The process in which the anatomical structures of an aorta are generated and organized. An aorta is an artery that carries blood from the heart to other parts of the body.
    GO:0042491    auditory receptor cell differentiation    The process in which a relatively unspecialized cell acquires specialized features of an auditory hair cell.
    GO:0001974    blood vessel remodeling    The reorganization or renovation of existing blood vessels.
    GO:0043010    camera-type eye development    The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field.
    GO:0061309    cardiac neural crest cell development involved in outflow tract morphogenesis    The process aimed at the progression of a cardiac neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell that contributes to the shaping of the outflow tract.
    GO:0003215    cardiac right ventricle morphogenesis    The process in which the right cardiac ventricle is generated and organized.
    GO:0060411    cardiac septum morphogenesis    The process in which the anatomical structure of a cardiac septum is generated and organized. A cardiac septum is a partition that separates parts of the heart.
    GO:0007154    cell communication    Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment.
    GO:0001709    cell fate determination    A process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment.
    GO:0061073    ciliary body morphogenesis    The process in which the ciliary body generated and organized. The ciliary body is the circumferential tissue inside the eye composed of the ciliary muscle and ciliary processes.
    GO:0072017    distal tubule development    The process whose specific outcome is the progression of the distal tubule over time, from its formation to the mature structure. In mammals, the distal tubule is a nephron tubule that begins at the macula densa and extends to the connecting tubule.
    GO:0061444    endocardial cushion cell development    The process whose specific outcome is the progression of an endocardial cushion cell over time, from its formation to the mature state.
    GO:0045446    endothelial cell differentiation    The process in which a mesodermal, bone marrow or neural crest cell acquires specialized features of an endothelial cell, a thin flattened cell. A layer of such cells lines the inside surfaces of body cavities, blood vessels, and lymph vessels, making up the endothelium.
    GO:0072015    glomerular visceral epithelial cell development    The process whose specific outcome is the progression of a glomerular visceral epithelial cell over time, from its formation to the mature structure. A glomerular visceral epithelial cell is a specialized epithelial cell that contains "feet" that interdigitate with the "feet" of other glomerular epithelial cells.
    GO:0030097    hemopoiesis    The process whose specific outcome is the progression of the myeloid and lymphoid derived organ/tissue systems of the blood and other parts of the body over time, from formation to the mature structure. The site of hemopoiesis is variable during development, but occurs primarily in bone marrow or kidney in many adult vertebrates.
    GO:0048839    inner ear development    The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure.
    GO:0030216    keratinocyte differentiation    The process in which a relatively unspecialized cell acquires specialized features of a keratinocyte.
    GO:0072070    loop of Henle development    The process whose specific outcome is the progression of the loop of Henle over time, from its formation to the mature structure. The loop of Henle is a nephron tubule that connects the proximal convoluted tubule to the distal convoluted tubule.
    GO:0002011    morphogenesis of an epithelial sheet    The process in which the anatomical structures of an epithelial sheet are generated and organized. An epithelial sheet is a flat surface consisting of closely packed epithelial cells.
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0045445    myoblast differentiation    The process in which a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into striated muscle fibers.
    GO:0045596    negative regulation of cell differentiation    Any process that stops, prevents, or reduces the frequency, rate or extent of cell differentiation.
    GO:0045599    negative regulation of fat cell differentiation    Any process that stops, prevents, or reduces the frequency, rate or extent of adipocyte differentiation.
    GO:0045665    negative regulation of neuron differentiation    Any process that stops, prevents, or reduces the frequency, rate or extent of neuron differentiation.
    GO:2000737    negative regulation of stem cell differentiation    Any process that stops, prevents or reduces the frequency, rate or extent of stem cell differentiation.
    GO:0072006    nephron development    The process whose specific outcome is the progression of the nephron over time, from its formation to the mature structure. A nephron is the functional unit of the kidney.
    GO:0007399    nervous system development    The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.
    GO:0097150    neuronal stem cell population maintenance    Any process in by an organism or tissue maintains a population of neuronal stem cells.
    GO:0045747    positive regulation of Notch signaling pathway    Any process that activates or increases the frequency, rate or extent of the Notch signaling pathway.
    GO:0045639    positive regulation of myeloid cell differentiation    Any process that activates or increases the frequency, rate or extent of myeloid cell differentiation.
    GO:0045669    positive regulation of osteoblast differentiation    Any process that activates or increases the frequency, rate or extent of osteoblast differentiation.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0061156    pulmonary artery morphogenesis    The process in which the anatomical structures of the pulmonary artery are generated and organized. The pulmonary artery is the artery that carries blood from the heart to the lungs.
    GO:0003184    pulmonary valve morphogenesis    The process in which the structure of the pulmonary valve is generated and organized.
    GO:0030334    regulation of cell migration    Any process that modulates the frequency, rate or extent of cell migration.
    GO:0042127    regulation of cell proliferation    Any process that modulates the frequency, rate or extent of cell proliferation.
    GO:0032495    response to muramyl dipeptide    Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muramyl dipeptide stimulus. Muramyl dipeptide is derived from peptidoglycan.
cellular component
    GO:0005912    adherens junction    A cell junction at which anchoring proteins (cadherins or integrins) extend through the plasma membrane and are attached to actin filaments.
    GO:0045177    apical part of cell    The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue.
    GO:0016324    apical plasma membrane    The region of the plasma membrane located at the apical end of the cell.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        JAG1_HUMAN | P785042kb9 2vj2 4cbz 4cc0 4xi7 5bo1

(-) Related Entries Specified in the PDB File

4cbz NOTCH LIGAND, JAGGED-1, CONTAINS AN N-TERMINAL C2 DOMAIN
4cc0 NOTCH LIGAND, JAGGED-1, CONTAINS AN N-TERMINAL C2 DOMAIN