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4CC1
Biol. Unit 1
Info
Asym.Unit (105 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (52 KB)
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(1)
Title
:
NOTCH LIGAND, JAGGED-1, CONTAINS AN N-TERMINAL C2 DOMAIN
Authors
:
C. R. Chilakuri, D. Sheppard, M. X. G. Ilagan, L. R. Holt, F. Abbott, S. Li R. Kopan, P. A. Handford, S. M. Lea
Date
:
17 Oct 13 (Deposition) - 27 Nov 13 (Release) - 25 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.84
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Signaling Protein, Glycoprotein, Extracellular, Developmental Protein, Notch Signaling Pathway, Egf, Dsl, Lipid, Notch, Membrane, Protein-Binding, Transmembrane, Egf-Like Domain, Disease Mutation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. R. Chilakuri, D. Sheppard, M. X. G. Ilagan, L. R. Holt, F. Abbott, S. Liang, R. Kopan, P. A. Handford, S. M. Lea
Structural Analysis Uncovers Lipid-Binding Properties Of Notch Ligands
Cell Rep. V. 5 861 2013
[
close entry info
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
4a: ALPHA-L-FUCOSE (FUCa)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
EDO
-1
Ligand/Ion
1,2-ETHANEDIOL
4
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
5
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC9 (SOFTWARE)
7: BC1 (SOFTWARE)
8: BC2 (SOFTWARE)
9: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:72 , ASP A:140 , SER A:141
BINDING SITE FOR RESIDUE CA A1340
2
AC2
SOFTWARE
ASN A:230
BINDING SITE FOR RESIDUE CL A1341
3
AC3
SOFTWARE
SER A:41 , HIS A:178
BINDING SITE FOR RESIDUE CL A1342
4
AC4
SOFTWARE
SER A:158
BINDING SITE FOR RESIDUE CL A1343
5
AC5
SOFTWARE
ARG A:203 , PHE A:207 , MET B:160
BINDING SITE FOR RESIDUE CL A1344
6
AC9
SOFTWARE
GLY A:62 , ARG A:64 , ASN B:53 , GLY B:57 , ALA B:58 , ARG B:59
BINDING SITE FOR RESIDUE EDO B1342
7
BC1
SOFTWARE
SER A:164
BINDING SITE FOR RESIDUE CL B1343
8
BC2
SOFTWARE
ASN A:215 , ASN A:217
BINDING SITE FOR MONO-SACCHARIDE NAG A1338 BOUND TO ASN A 217
9
BC3
SOFTWARE
GLY A:309 , THR A:311 , SER A:323
BINDING SITE FOR MONO-SACCHARIDE FUC A1339 BOUND TO THR A 311
[
close Site info
]
SAPs(SNPs)/Variants
(43, 43)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_026298 (G33D, chain A, )
02: VAR_026299 (G33S, chain A, )
03: VAR_026300 (G33V, chain A, )
04: VAR_013186 (L37S, chain A, )
05: VAR_026301 (I39S, chain A, )
06: VAR_026302 (L40P, chain A, )
07: VAR_026303 (V45L, chain A, )
08: VAR_026304 (N53D, chain A, )
09: VAR_026305 (K65M, chain A, )
10: VAR_026306 (F75S, chain A, )
11: VAR_026307 (C78S, chain A, )
12: VAR_013187 (L79H, chain A, )
13: VAR_026308 (C92R, chain A, )
14: VAR_026309 (C92Y, chain A, )
15: VAR_026310 (I120N, chain A, )
16: VAR_026311 (P123S, chain A, )
17: VAR_013188 (A127T, chain A, )
18: VAR_013189 (P129R, chain A, )
19: VAR_048985 (V146I, chain A, )
20: VAR_013190 (I152T, chain A, )
21: VAR_026312 (A155P, chain A, )
22: VAR_013191 (P163L, chain A, )
23: VAR_026313 (P163R, chain A, )
24: VAR_026314 (Y181N, chain A, )
25: VAR_013192 (R184C, chain A, )
26: VAR_013193 (R184G, chain A, )
27: VAR_013194 (R184H, chain A, )
28: VAR_013195 (R184L, chain A, )
29: VAR_013196 (C187S, chain A, )
30: VAR_026315 (C187Y, chain A, )
31: VAR_026316 (R203K, chain A, )
32: VAR_013197 (C220F, chain A, )
33: VAR_026317 (W224C, chain A, )
34: VAR_013198 (C229G, chain A, )
35: VAR_013199 (C229Y, chain A, )
36: VAR_026318 (C234Y, chain A, )
37: VAR_026319 (R252G, chain A, )
38: VAR_026320 (G256S, chain A, )
39: VAR_026321 (P269L, chain A, )
40: VAR_026322 (C271R, chain A, )
41: VAR_013200 (G274D, chain A, )
42: VAR_013201 (C284F, chain A, )
43: VAR_013202 (W288C, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_026298
G
33
D
JAG1_HUMAN
Disease (ALGS1)
---
A
G
33
D
02
UniProt
VAR_026299
G
33
S
JAG1_HUMAN
Disease (ALGS1)
---
A
G
33
S
03
UniProt
VAR_026300
G
33
V
JAG1_HUMAN
Disease (ALGS1)
---
A
G
33
V
04
UniProt
VAR_013186
L
37
S
JAG1_HUMAN
Disease (ALGS1)
---
A
L
37
S
05
UniProt
VAR_026301
I
39
S
JAG1_HUMAN
Disease (ALGS1)
---
A
I
39
S
06
UniProt
VAR_026302
L
40
P
JAG1_HUMAN
Disease (ALGS1)
---
A
L
40
P
07
UniProt
VAR_026303
V
45
L
JAG1_HUMAN
Polymorphism
183974372
A
V
45
L
08
UniProt
VAR_026304
N
53
D
JAG1_HUMAN
Unclassified
---
A
N
53
D
09
UniProt
VAR_026305
K
65
M
JAG1_HUMAN
Unclassified
---
A
K
65
M
10
UniProt
VAR_026306
F
75
S
JAG1_HUMAN
Disease (ALGS1)
---
A
F
75
S
11
UniProt
VAR_026307
C
78
S
JAG1_HUMAN
Disease (ALGS1)
---
A
C
78
S
12
UniProt
VAR_013187
L
79
H
JAG1_HUMAN
Disease (ALGS1)
---
A
L
79
H
13
UniProt
VAR_026308
C
92
R
JAG1_HUMAN
Disease (ALGS1)
---
A
C
92
R
14
UniProt
VAR_026309
C
92
Y
JAG1_HUMAN
Disease (ALGS1)
---
A
C
92
Y
15
UniProt
VAR_026310
I
120
N
JAG1_HUMAN
Disease (ALGS1)
---
A
I
120
N
16
UniProt
VAR_026311
P
123
S
JAG1_HUMAN
Disease (ALGS1)
---
A
P
123
S
17
UniProt
VAR_013188
A
127
T
JAG1_HUMAN
Disease (ALGS1)
---
A
A
127
T
18
UniProt
VAR_013189
P
129
R
JAG1_HUMAN
Disease (ALGS1)
---
A
P
129
R
19
UniProt
VAR_048985
V
146
I
JAG1_HUMAN
Polymorphism
6040067
A
V
146
I
20
UniProt
VAR_013190
I
152
T
JAG1_HUMAN
Disease (ALGS1)
---
A
I
152
T
21
UniProt
VAR_026312
A
155
P
JAG1_HUMAN
Disease (ALGS1)
---
A
A
155
P
22
UniProt
VAR_013191
P
163
L
JAG1_HUMAN
Disease (ALGS1)
---
A
P
163
L
23
UniProt
VAR_026313
P
163
R
JAG1_HUMAN
Disease (ALGS1)
---
A
P
163
R
24
UniProt
VAR_026314
Y
181
N
JAG1_HUMAN
Disease (ALGS1)
---
A
Y
181
N
25
UniProt
VAR_013192
R
184
C
JAG1_HUMAN
Disease (ALGS1)
---
A
R
184
C
26
UniProt
VAR_013193
R
184
G
JAG1_HUMAN
Disease (ALGS1)
---
A
R
184
G
27
UniProt
VAR_013194
R
184
H
JAG1_HUMAN
Disease (ALGS1)
---
A
R
184
H
28
UniProt
VAR_013195
R
184
L
JAG1_HUMAN
Disease (ALGS1)
---
A
R
184
L
29
UniProt
VAR_013196
C
187
S
JAG1_HUMAN
Disease (ALGS1)
---
A
C
187
S
30
UniProt
VAR_026315
C
187
Y
JAG1_HUMAN
Disease (ALGS1)
---
A
C
187
Y
31
UniProt
VAR_026316
R
203
K
JAG1_HUMAN
Unclassified
---
A
R
203
K
32
UniProt
VAR_013197
C
220
F
JAG1_HUMAN
Disease (ALGS1)
---
A
C
220
F
33
UniProt
VAR_026317
W
224
C
JAG1_HUMAN
Disease (ALGS1)
---
A
W
224
C
34
UniProt
VAR_013198
C
229
G
JAG1_HUMAN
Disease (ALGS1)
---
A
C
229
G
35
UniProt
VAR_013199
C
229
Y
JAG1_HUMAN
Disease (ALGS1)
---
A
C
229
Y
36
UniProt
VAR_026318
C
234
Y
JAG1_HUMAN
Unclassified
---
A
C
234
Y
37
UniProt
VAR_026319
R
252
G
JAG1_HUMAN
Disease (ALGS1)
---
A
R
252
G
38
UniProt
VAR_026320
G
256
S
JAG1_HUMAN
Disease (ALGS1)
---
A
G
256
S
39
UniProt
VAR_026321
P
269
L
JAG1_HUMAN
Disease (ALGS1)
---
A
P
269
L
40
UniProt
VAR_026322
C
271
R
JAG1_HUMAN
Disease (ALGS1)
---
A
C
271
R
41
UniProt
VAR_013200
G
274
D
JAG1_HUMAN
Disease (TOF)
28939668
A
G
274
D
42
UniProt
VAR_013201
C
284
F
JAG1_HUMAN
Disease (ALGS1)
---
A
C
284
F
43
UniProt
VAR_013202
W
288
C
JAG1_HUMAN
Disease (ALGS1)
---
A
W
288
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 8)
Info
All PROSITE Patterns/Profiles
1: DSL (A:185-229)
2: EGF_3 (A:230-263,A:296-334)
3: EGF_1 (A:251-262,A:282-293,A:322-333)
4: EGF_2 (A:251-265,A:322-333)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DSL
PS51051
DSL domain profile.
JAG1_HUMAN
185-229
1
A:185-229
-
2
EGF_3
PS50026
EGF-like domain profile.
JAG1_HUMAN
230-263
296-334
336-372
374-410
412-448
450-485
487-523
525-561
586-627
629-665
667-703
705-741
744-780
782-818
820-856
2
A:230-263
-
A:296-334
-
-
-
-
-
-
-
-
-
-
-
-
-
-
3
EGF_1
PS00022
EGF-like domain signature 1.
JAG1_HUMAN
251-262
282-293
322-333
360-371
398-409
436-447
473-484
511-522
549-560
615-626
653-664
691-702
729-740
768-779
806-817
844-855
3
A:251-262
-
A:282-293
-
A:322-333
-
-
-
-
-
-
-
-
-
-
-
-
-
-
4
EGF_2
PS01186
EGF-like domain signature 2.
JAG1_HUMAN
251-265
322-333
360-371
436-447
473-484
511-522
615-626
653-664
691-702
729-740
768-779
806-817
2
A:251-265
-
A:322-333
-
-
-
-
-
-
-
-
-
-
-
[
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]
Exons
(0, 0)
Info
All Exons
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Select:
Label:
All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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Asym.Unit (105 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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