Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Biological Unit 1
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
(-)Biological Unit 5
(-)Biological Unit 6
(-)Biological Unit 7
(-)Biological Unit 8
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)
Image Biological Unit 5
Biological Unit 5  (Jmol Viewer)
Image Biological Unit 6
Biological Unit 6  (Jmol Viewer)
Image Biological Unit 7
Biological Unit 7  (Jmol Viewer)
Image Biological Unit 8
Biological Unit 8  (Jmol Viewer)

(-) Description

Title :  XENOPUS RSPO2 FU1-FU2 CRYSTAL FORM I
 
Authors :  M. Zebisch, E. Y. Jones
Date :  01 Oct 13  (Deposition) - 20 Nov 13  (Release) - 27 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Keywords :  Signaling Protein, Wnt, Znrf3, Rnf43, Lgr4, Lgr5, Lgr6, Rspo, R-Spo, Rspo1, Rspo3, Rspo4, Receptor, Membrane, Signalling (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Zebisch, Y. Xu, C. Krastev, B. T. Macdonald, M. Chen, R. J. C. Gilbert X. He, E. Y. Jones
Structural And Molecular Basis Of Znrf3/Rnf43 Transmembrane Ubiquitin Ligase Inhibition By The Wnt Agonist R-Spondin.
Nat. Commun. V. 4 2787 2013
PubMed-ID: 24225776  |  Reference-DOI: 10.1038/NCOMMS3787

(-) Compounds

Molecule 1 - R-SPONDIN-2
    ChainsA, B, C, D, E, F, G, H
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System Cell LineHEK293T
    Expression System CommonHUMAN
    Expression System PlasmidPHLSEC
    Expression System Taxid9606
    Expression System VectorTRANSIENT
    FragmentFU1-FU2, RESIDUES 35-144
    Organism CommonWESTERN CLAWED FROG
    Organism ScientificXENOPUS (SILURANA) TROPICALIS
    SynonymROOF PLATE-SPECIFIC SPONDIN-2, RSPO2

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)A       
Biological Unit 2 (1x) B      
Biological Unit 3 (1x)  C     
Biological Unit 4 (1x)   D    
Biological Unit 5 (1x)    E   
Biological Unit 6 (1x)     F  
Biological Unit 7 (1x)      G 
Biological Unit 8 (1x)       H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4C8V)

(-) Sites  (0, 0)

(no "Site" information available for 4C8V)

(-) SS Bonds  (64, 64)

Asymmetric Unit
No.Residues
1A:40 -A:46
2A:43 -A:52
3A:55 -A:74
4A:78 -A:93
5A:96 -A:104
6A:101 -A:110
7A:113 -A:124
8A:128 -A:141
9B:40 -B:46
10B:43 -B:52
11B:55 -B:74
12B:78 -B:93
13B:96 -B:104
14B:101 -B:110
15B:113 -B:124
16B:128 -B:141
17C:40 -C:46
18C:43 -C:52
19C:55 -C:74
20C:78 -C:93
21C:96 -C:104
22C:101 -C:110
23C:113 -C:124
24C:128 -C:141
25D:40 -D:46
26D:43 -D:52
27D:55 -D:74
28D:78 -D:93
29D:96 -D:104
30D:101 -D:110
31D:113 -D:124
32D:128 -D:141
33E:40 -E:46
34E:43 -E:52
35E:55 -E:74
36E:78 -E:93
37E:96 -E:104
38E:101 -E:110
39E:113 -E:124
40E:128 -E:141
41F:40 -F:46
42F:43 -F:52
43F:55 -F:74
44F:78 -F:93
45F:96 -F:104
46F:101 -F:110
47F:113 -F:124
48F:128 -F:141
49G:40 -G:46
50G:43 -G:52
51G:55 -G:74
52G:78 -G:93
53G:96 -G:104
54G:101 -G:110
55G:113 -G:124
56G:128 -G:141
57H:40 -H:46
58H:43 -H:52
59H:55 -H:74
60H:78 -H:93
61H:96 -H:104
62H:101 -H:110
63H:113 -H:124
64H:128 -H:141

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4C8V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4C8V)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TSP1PS50092 Thrombospondin type-1 (TSP1) repeat profile.RSPO2_XENTR144-204
 
 
 
  4A:144-144
B:144-144
C:144-144
D:144-144
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TSP1PS50092 Thrombospondin type-1 (TSP1) repeat profile.RSPO2_XENTR144-204
 
 
 
  1A:144-144
-
-
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TSP1PS50092 Thrombospondin type-1 (TSP1) repeat profile.RSPO2_XENTR144-204
 
 
 
  1-
B:144-144
-
-
Biological Unit 3 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TSP1PS50092 Thrombospondin type-1 (TSP1) repeat profile.RSPO2_XENTR144-204
 
 
 
  1-
-
C:144-144
-
Biological Unit 4 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TSP1PS50092 Thrombospondin type-1 (TSP1) repeat profile.RSPO2_XENTR144-204
 
 
 
  1-
-
-
D:144-144
Biological Unit 5 (, 0)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TSP1PS50092 Thrombospondin type-1 (TSP1) repeat profile.RSPO2_XENTR144-204
 
 
 
  0-
-
-
-
Biological Unit 6 (, 0)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TSP1PS50092 Thrombospondin type-1 (TSP1) repeat profile.RSPO2_XENTR144-204
 
 
 
  0-
-
-
-
Biological Unit 7 (, 0)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TSP1PS50092 Thrombospondin type-1 (TSP1) repeat profile.RSPO2_XENTR144-204
 
 
 
  0-
-
-
-
Biological Unit 8 (, 0)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TSP1PS50092 Thrombospondin type-1 (TSP1) repeat profile.RSPO2_XENTR144-204
 
 
 
  0-
-
-
-

(-) Exons   (0, 0)

(no "Exon" information available for 4C8V)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:115
 aligned with RSPO2_XENTR | Q5M7L6 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:127
                                    45        55        65        75        85        95       105       115       125       135       145       155       
          RSPO2_XENTR    36 TNPICKGCLSCSKDNGCLRCQPKLFFYLRREGMRQYGECLQSCPPGYYGVRGPDMNRCSRCRIENCDSCFSRDFCIKCKSGFYSHKGQCFEECPEGFAPLDDTMVCVDGCEVGPWSEWGTCSRNNRT 162
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee.....eeee....eeeeeee..eeeeeee......eeeee....eeeee.....eeeeee..eeeee....eee..eee......eeee....eeee.------------...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------TSP1  PDB: A:144-14 PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c8v A  36 TNPICKGCLSCSKDNGCLRCQPKLFFYLRREGMRQYGECLQSCPPGYYGVRGPDMNRCSRCRIENCDSCFSRDFCIKCKSGFYSHKGQCFEECPEGFAPLDDTMVCVDG------------TKHHHH 150
                                    45        55        65        75        85        95       105       115       125       135        |-         - |     
                                                                                                                                      144          145     

Chain B from PDB  Type:PROTEIN  Length:112
 aligned with RSPO2_XENTR | Q5M7L6 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:124
                                    48        58        68        78        88        98       108       118       128       138       148       158    
          RSPO2_XENTR    39 ICKGCLSCSKDNGCLRCQPKLFFYLRREGMRQYGECLQSCPPGYYGVRGPDMNRCSRCRIENCDSCFSRDFCIKCKSGFYSHKGQCFEECPEGFAPLDDTMVCVDGCEVGPWSEWGTCSRNNRT 162
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee..eeeeeee......eeeee....eeeee.....eeee.....eeee....eee..eee......eeee....eeee.------------...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------TSP1  PDB: B:144-14 PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c8v B  39 ICKGCLSCSKDNGCLRCQPKLFFYLRREGMRQYGECLQSCPPGYYGVRGPDMNRCSRCRIENCDSCFSRDFCIKCKSGFYSHKGQCFEECPEGFAPLDDTMVCVDG------------TKHHHH 150
                                    48        58        68        78        88        98       108       118       128       138     |   -       146    
                                                                                                                                   144          145     

Chain C from PDB  Type:PROTEIN  Length:113
 aligned with RSPO2_XENTR | Q5M7L6 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:125
                                    47        57        67        77        87        97       107       117       127       137       147       157     
          RSPO2_XENTR    38 PICKGCLSCSKDNGCLRCQPKLFFYLRREGMRQYGECLQSCPPGYYGVRGPDMNRCSRCRIENCDSCFSRDFCIKCKSGFYSHKGQCFEECPEGFAPLDDTMVCVDGCEVGPWSEWGTCSRNNRT 162
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................eeeeeee..eeeeeee......eeeee....eeeee.....eeeeee..eeeee....eee..eee......eeee....eeee.------------...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------TSP1  PDB: C:144-14 PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c8v C  38 PICKGCLSCSKDNGCLRCQPKLFFYLRREGMRQYGECLQSCPPGYYGVRGPDMNRCSRCRIENCDSCFSRDFCIKCKSGFYSHKGQCFEECPEGFAPLDDTMVCVDG------------TKHHHH 150
                                    47        57        67        77        87        97       107       117       127       137      |  -       145     
                                                                                                                                    144          145     

Chain D from PDB  Type:PROTEIN  Length:110
 aligned with RSPO2_XENTR | Q5M7L6 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:122
                                    49        59        69        79        89        99       109       119       129       139       149       159  
          RSPO2_XENTR    40 CKGCLSCSKDNGCLRCQPKLFFYLRREGMRQYGECLQSCPPGYYGVRGPDMNRCSRCRIENCDSCFSRDFCIKCKSGFYSHKGQCFEECPEGFAPLDDTMVCVDGCEVGPWSEWGTCSRNNR 161
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.....eeee....eeeee......eeeee......eeeee....eeeee.....eeeeee..eeeee....eee..eee......eeee....eeee.------------..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------TSP1               PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 4c8v D  40 CKGCLSCSKDNGCLRCQPKLFFYLRREGMRQYGECLQSCPPGYYGVRGPDMNRCSRCRIENCDSCFSRDFCIKCKSGFYSHKGQCFEECPEGFAPLDDTMVCVDG------------TKHHH 149
                                    49        59        69        79        89        99       109       119       129       139    |    -       147  
                                                                                                                                  144          145    

Chain E from PDB  Type:PROTEIN  Length:105
 aligned with RSPO2_XENTR | Q5M7L6 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:105
                                    48        58        68        78        88        98       108       118       128       138     
          RSPO2_XENTR    39 ICKGCLSCSKDNGCLRCQPKLFFYLRREGMRQYGECLQSCPPGYYGVRGPDMNRCSRCRIENCDSCFSRDFCIKCKSGFYSHKGQCFEECPEGFAPLDDTMVCVD 143
               SCOP domains --------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee...eeeee....eeeee......eeeee......eeee.....eeeee.....eeeeee..eeeee....eee..eee.......ee......ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 4c8v E  39 ICKGCLSCSKDNGCLRCQPKLFFYLRREGMRQYGECLQSCPPGYYGVRGPDMNRCSRCRIENCDSCFSRDFCIKCKSGFYSHKGQCFEECPEGFAPLDDTMVCVD 143
                                    48        58        68        78        88        98       108       118       128       138     

Chain F from PDB  Type:PROTEIN  Length:105
 aligned with RSPO2_XENTR | Q5M7L6 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:105
                                    48        58        68        78        88        98       108       118       128       138     
          RSPO2_XENTR    39 ICKGCLSCSKDNGCLRCQPKLFFYLRREGMRQYGECLQSCPPGYYGVRGPDMNRCSRCRIENCDSCFSRDFCIKCKSGFYSHKGQCFEECPEGFAPLDDTMVCVD 143
               SCOP domains --------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee...eeeee....eeeeeee..eeeeeee......eeeee....eeeee.....eeeeee..eeeee....eee..eee.......ee......ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 4c8v F  39 ICKGCLSCSKDNGCLRCQPKLFFYLRREGMRQYGECLQSCPPGYYGVRGPDMNRCSRCRIENCDSCFSRDFCIKCKSGFYSHKGQCFEECPEGFAPLDDTMVCVD 143
                                    48        58        68        78        88        98       108       118       128       138     

Chain G from PDB  Type:PROTEIN  Length:105
 aligned with RSPO2_XENTR | Q5M7L6 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:105
                                    48        58        68        78        88        98       108       118       128       138     
          RSPO2_XENTR    39 ICKGCLSCSKDNGCLRCQPKLFFYLRREGMRQYGECLQSCPPGYYGVRGPDMNRCSRCRIENCDSCFSRDFCIKCKSGFYSHKGQCFEECPEGFAPLDDTMVCVD 143
               SCOP domains --------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee...eeeee....eeeeeee..eeeeeee......eeeee....eeeee.....eeee.....eeee....eee..eee.......ee......ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 4c8v G  39 ICKGCLSCSKDNGCLRCQPKLFFYLRREGMRQYGECLQSCPPGYYGVRGPDMNRCSRCRIENCDSCFSRDFCIKCKSGFYSHKGQCFEECPEGFAPLDDTMVCVD 143
                                    48        58        68        78        88        98       108       118       128       138     

Chain H from PDB  Type:PROTEIN  Length:106
 aligned with RSPO2_XENTR | Q5M7L6 from UniProtKB/Swiss-Prot  Length:243

    Alignment length:106
                                    47        57        67        77        87        97       107       117       127       137      
          RSPO2_XENTR    38 PICKGCLSCSKDNGCLRCQPKLFFYLRREGMRQYGECLQSCPPGYYGVRGPDMNRCSRCRIENCDSCFSRDFCIKCKSGFYSHKGQCFEECPEGFAPLDDTMVCVD 143
               SCOP domains ---------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee...eeeee....eeeeeee..eeeeeee......eeeee....eeeee.....eeeeee..eeeee....eee..eee.......ee......ee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 4c8v H  38 PICKGCLSCSKDNGCLRCQPKLFFYLRREGMRQYGECLQSCPPGYYGVRGPDMNRCSRCRIENCDSCFSRDFCIKCKSGFYSHKGQCFEECPEGFAPLDDTMVCVD 143
                                    47        57        67        77        87        97       107       117       127       137      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4C8V)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4C8V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4C8V)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (RSPO2_XENTR | Q5M7L6)
molecular function
    GO:0008201    heparin binding    Interacting selectively and non-covalently with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.
biological process
    GO:0016055    Wnt signaling pathway    The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state.
    GO:0050896    response to stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 4c8v)
 
  Sites
(no "Sites" information available for 4c8v)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4c8v)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]
    Biological Unit 5  [ Jena3D ]
    Biological Unit 6  [ Jena3D ]
    Biological Unit 7  [ Jena3D ]
    Biological Unit 8  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4c8v
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  RSPO2_XENTR | Q5M7L6
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  RSPO2_XENTR | Q5M7L6
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RSPO2_XENTR | Q5M7L64c8w 4c9a 4c9e 4c9r 4c9u 4c9v

(-) Related Entries Specified in the PDB File

4c84 ZEBRAFISH ZNRF3 ECTODOMAIN CRYSTAL FORM I
4c85 ZEBRAFISH ZNRF3 ECTODOMAIN CRYSTAL FORM II
4c86 MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM I
4c8a MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM II
4c8c MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM III
4c8f MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM IV
4c8p MOUSE ZNRF3 ECTODOMAIN CRYSTAL FORM V, DISULFIDE-BRIDGED S90C VARIANT
4c8t XENOPUS ZNRF3 ECTODOMAIN CRYSTAL FORM I
4c8v XENOPUS RSPO2 FU1-FU2 CRYSTAL FORM I
4c8w XENOPUS RSPO2 FU1-FU2 CRYSTAL FORM II
4c99 MOUSE ZNRF3 ECTODOMAIN IN COMPLEX WITH MOUSE RSPO2 FU1 -FU2 CRYSTAL FORM I
4c9a MOUSE ZNRF3 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 FU1-FU2 (SELENO MET) CRYSTAL FORM I
4c9e MOUSE ZNRF3 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 FU1-FU2 (SELENO MET) CRYSTAL FORM II
4c9r XENOPUS ZNRF3 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 FU1-FU2 CRYSTAL FORM I
4c9u XENOPUS ZNRF3 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 FU1-FU2 CRYSTAL FORM II
4c9v XENOPUS RNF43 ECTODOMAIN IN COMPLEX WITH XENOPUS RSPO2 FU1-FU2