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(-) Description

Title :  COMPLETE CRYSTAL STRUCTURE OF THE CARBOXYLESTERASE CEST-2923 (LP_2923) FROM LACTOBACILLUS PLANTARUM WCFS1
 
Authors :  R. Benavente, M. Esteban-Torres, I. Acebron, B. Delasrivas, R. Munoz, Y. Alvarez, J. M. Mancheno
Date :  30 Jul 13  (Deposition) - 30 Oct 13  (Release) - 18 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Hydrolase, Lactic Acid Bacteria (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Benavente, M. Esteban-Torres, I. Acebron, B. De Las Rivas, R. Munoz, Y. Alvarez, J. M. Mancheno
Structure, Biochemical Characterization And Analysis Of The Pleomorphism Of Carboxylesterase Cest-2923 From Lactobacillus Plantarum Wcfs1
Febs J. V. 280 6658 2013
PubMed-ID: 24127688  |  Reference-DOI: 10.1111/FEBS.12569

(-) Compounds

Molecule 1 - LIPASE/ESTERASE
    Chains: A, B
    EC Number: 3.1.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Organism Scientific: LACTOBACILLUS PLANTARUM
    Organism Taxid: 220668
    Strain: WCFS1
    Synonym: CEST-2923

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 13)

Asymmetric Unit (3, 13)
No.NameCountTypeFull Name
11441Ligand/IonTRIS-HYDROXYMETHYL-METHYL-AMMONIUM
2ACT3Ligand/IonACETATE ION
3SO49Ligand/IonSULFATE ION
Biological Unit 1 (3, 26)
No.NameCountTypeFull Name
11442Ligand/IonTRIS-HYDROXYMETHYL-METHYL-AMMONIUM
2ACT6Ligand/IonACETATE ION
3SO418Ligand/IonSULFATE ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:43 , GLY A:44 , SER A:116 , ALA A:117 , HIS A:233 , HOH A:2079 , HOH A:2150 , HOH A:2219BINDING SITE FOR RESIDUE SO4 A1276
02AC2SOFTWAREGLY B:42 , GLY B:43 , GLY B:44 , SER B:116 , ALA B:117 , HIS B:233 , HOH B:2071 , HOH B:2186BINDING SITE FOR RESIDUE SO4 B1276
03AC3SOFTWARELYS A:244 , LYS A:247 , LYS A:249 , TYR A:250BINDING SITE FOR RESIDUE SO4 A1277
04AC4SOFTWAREASP B:201 , GLU B:202 , SER B:203 , ILE B:232 , HIS B:233 , HOH B:2202BINDING SITE FOR RESIDUE SO4 B1277
05AC5SOFTWARELYS B:244 , LYS B:247 , LYS B:249 , TYR B:250BINDING SITE FOR RESIDUE SO4 B1278
06AC6SOFTWAREARG A:109 , ALA A:273 , HOH A:2265BINDING SITE FOR RESIDUE SO4 A1278
07AC7SOFTWARESER A:167 , ARG A:170 , ASN A:171 , HOH A:2200 , HOH A:2267 , ARG B:137BINDING SITE FOR RESIDUE SO4 A1279
08AC8SOFTWAREARG A:137 , SER B:167 , ARG B:170 , ASN B:171 , TRP B:180 , HOH B:2231BINDING SITE FOR RESIDUE SO4 B1279
09AC9SOFTWAREGLN A:183 , ARG A:184 , LYS A:211BINDING SITE FOR RESIDUE SO4 A1280
10BC1SOFTWARETHR A:175 , ARG B:137 , ARG B:178 , HOH B:2232 , HOH B:2233BINDING SITE FOR RESIDUE ACT B1280
11BC2SOFTWAREARG B:109 , HOH B:2234BINDING SITE FOR RESIDUE ACT B1281
12BC3SOFTWAREGLN B:183 , ARG B:184 , LYS B:211BINDING SITE FOR RESIDUE ACT B1282
13BC4SOFTWAREGLN B:5 , ARG B:6 , GLU B:53 , GLN B:99 , HOH B:2074 , HOH B:2075BINDING SITE FOR RESIDUE 144 B1283

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4BZW)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Tyr A:82 -Pro A:83
2Phe A:163 -Pro A:164
3Tyr B:82 -Pro B:83
4Phe B:163 -Pro B:164

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4BZW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4BZW)

(-) Exons   (0, 0)

(no "Exon" information available for 4BZW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:276
 aligned with F9US10_LACPL | F9US10 from UniProtKB/TrEMBL  Length:276

    Alignment length:276
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270      
         F9US10_LACPL     1 MQVEQRTLNTAAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQLIVGDQSVYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVIDLTAGFPTTSAARNQITTDARLWAAQRLVTPASKPAFVWQTATDESVPPINSLKYVQAMLQHQVATAYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQGLLAGNY 276
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee......eeeeeee............eeeeeee........hhhhhhhhhhhhhh...eeeee............hhhhhhhhhhhhhhhhhhhhhheeeeeeeeeee.hhhhhhhhhhhhh.hhhhhhhh..........eeeee............hhhhhhhhh.hhhhh.hhhhh......eeeeee.......hhhhhhhhhhhhhh...eeeeee..................hhhhh..hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4bzw A   1 MQVEQRTLNTAAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQLIVGDQSVYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVIDLTAGFPTTSAARNQITTDARLWAAQRLVTPASKPAFVWQTATDESVPPINSLKYVQAMLQHQVATAYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQGLLAGNY 276
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270      


Chain B from PDB  Type:PROTEIN  Length:276
 aligned with F9US10_LACPL | F9US10 from UniProtKB/TrEMBL  Length:276

    Alignment length:276
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270      
         F9US10_LACPL     1 MQVEQRTLNTAAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQLIVGDQSVYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVIDLTAGFPTTSAARNQITTDARLWAAQRLVTPASKPAFVWQTATDESVPPINSLKYVQAMLQHQVATAYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQGLLAGNY 276
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee......eeeeeee............eeeeeee........hhhhhhhhhhhhhh...eeeee............hhhhhhhhhhhhhhhhhhhhhheeeeeeeeeee.hhhhhhhhhhhhh.hhhhhhhh..........eeeee............hhhhhhhhh.hhhhh.hhhhh......eeeeee.......hhhhhhhhhhhhhh...eeeeee..................hhhhh..hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4bzw B   1 MQVEQRTLNTAAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQLIVGDQSVYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVIDLTAGFPTTSAARNQITTDARLWAAQRLVTPASKPAFVWQTATDESVPPINSLKYVQAMLQHQVATAYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQGLLAGNY 276
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4BZW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4BZW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4BZW)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (F9US10_LACPL | F9US10)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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        F9US10_LACPL | F9US10: 3bxp 3d3n 4bzz 4c01

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