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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE CARBOXYLESTERASE (LP_2923) FROM LACTOBACILLUS PLANTARUM WCFS1 AT 1.70 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  14 Jan 08  (Deposition) - 29 Jan 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Putative Carboxylesterase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Carboxylesterase (Np_786266. 1 From Lactobacillus Plantarum At 1. 70 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE LIPASE/ESTERASE
    Atcc: BAA-793
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NP_786266.1, LP_2923
    Organism Scientific: LACTOBACILLUS PLANTARUM WCFS1
    Organism Taxid: 220668
    Strain: WCFS1 / NCIMB 8826

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 22)

Asymmetric/Biological Unit (5, 22)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2EPE2Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3MSE12Mod. Amino AcidSELENOMETHIONINE
4PGO4Ligand/IonS-1,2-PROPANEDIOL
5PGR3Ligand/IonR-1,2-PROPANEDIOL

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY B:50BINDING SITE FOR RESIDUE CL B 277
02AC2SOFTWAREASP A:78 , GLN A:79 , SER A:80 , TRP A:84 , GLN A:172 , HOH A:350 , HOH A:387BINDING SITE FOR RESIDUE EPE A 277
03AC3SOFTWAREALA A:224 , HIS A:226 , LEU A:261 , GLU A:268 , PHE B:228 , GLY B:229 , SER B:230 , HIS B:233BINDING SITE FOR RESIDUE PGR A 278
04AC4SOFTWAREARG A:135 , ASP A:141 , TYR A:143 , GLN A:144 , ARG B:135 , ASP B:141 , TYR B:143 , GLN B:144 , HOH B:449BINDING SITE FOR RESIDUE PGO A 279
05AC5SOFTWAREGLN A:108 , GLN A:146 , ALA A:148 , LYS A:191 , HOH A:373BINDING SITE FOR RESIDUE PGO A 280
06AC6SOFTWAREALA A:54 , THR A:58 , MSE A:61 , HOH A:328BINDING SITE FOR RESIDUE PGO A 281
07AC7SOFTWAREASP B:78 , GLN B:79 , SER B:80 , TRP B:84 , GLN B:172 , HOH B:383 , HOH B:457BINDING SITE FOR RESIDUE EPE B 278
08AC8SOFTWARETYR B:20 , ALA B:54 , ALA B:57 , THR B:58 , HOH B:395 , HOH B:432BINDING SITE FOR RESIDUE PGO B 279
09AC9SOFTWAREGLN A:214 , PRO B:206 , ILE B:207 , HOH B:437BINDING SITE FOR RESIDUE PGR B 280
10BC1SOFTWAREASP A:33 , ALA A:100 , SER A:101 , VAL A:105 , HOH A:323 , ASP B:33 , VAL B:105 , HOH B:358 , HOH B:359BINDING SITE FOR RESIDUE PGR B 281

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BXP)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Tyr A:82 -Pro A:83
2Phe A:163 -Pro A:164
3Tyr B:82 -Pro B:83
4Phe B:163 -Pro B:164

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3BXP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3BXP)

(-) Exons   (0, 0)

(no "Exon" information available for 3BXP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:258
 aligned with F9US10_LACPL | F9US10 from UniProtKB/TrEMBL  Length:276

    Alignment length:274
                             1                                                                                                                                                                                                                                                                                
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269    
         F9US10_LACPL     - -MQVEQRTLNTAAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQLIVGDQSVYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVIDLTAGFPTTSAARNQITTDARLWAAQRLVTPASKPAFVWQTATDESVPPINSLKYVQAMLQHQVATAYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQGLLA 273
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3bxpA00 A:0-273  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee......eeeeeeee...........eeeeeee...........hhhhhhhhhhhh..eeeeee...........hhhhhhhhhhhhhhhhhhhhhheeeeeeeeeeehhhhhhhhhhhhhh.hhhhhhhh..........eeeee............hhhhhhhhh.hhhhhhhhhhh......eeeee........hhhhhhhhhhhhhh...eeeee....----------------hhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bxp A   0 GmQVEQRTLNTAAHPFQITAYWLDQISDFETAVDYPImIICPGGGFTYHSGREEAPIATRmmAAGmHTVVLNYQLIVGDQSVYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVIDLTAGFPTTSAARNQITTDARLWAAQRLVTPASKPAFVWQTATDESVPPINSLKYVQAmLQHQVATAYHLFGSG----------------DKYLNDQAAIWPQLALRWLQEQGLLA 273
                             |       9        19        29       |39        49        59||   |  69        79        89        99       109       119       129       139       149       159       169       179       189       199       209      |219       229 |       -       249       259       269    
                             |                                  37-MSE                 60-MSE|                                                                                                                                                    216-MSE        231              248                         
                             1-MSE                                                      61-MSE                                                                                                                                                                                                                
                                                                                            65-MSE                                                                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:262
 aligned with F9US10_LACPL | F9US10 from UniProtKB/TrEMBL  Length:276

    Alignment length:274
                             1                                                                                                                                                                                                                                                                                
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269    
         F9US10_LACPL     - -MQVEQRTLNTAAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQLIVGDQSVYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVIDLTAGFPTTSAARNQITTDARLWAAQRLVTPASKPAFVWQTATDESVPPINSLKYVQAMLQHQVATAYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQGLLA 273
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3bxpB00 B:0-273  [code=3.40.50.1820, no name defined]                                                                                                                                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee......eeeeeeee...........eeeeeee...........hhhhhhhhhhhh..eeeeee...........hhhhhhhhhhhhhhhhhhhhhheeeeeeeeeee.hhhhhhhhhhhhh.hhhhhhhh..........eeeee............hhhhhhhhh.hhhhhhhhhhh......eeeeee.......hhhhhhhhhhhhhh...eeeeee.hhhhhh...------------.....hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3bxp B   0 GmQVEQRTLNTAAHPFQITAYWLDQISDFETAVDYPImIICPGGGFTYHSGREEAPIATRmmAAGmHTVVLNYQLIVGDQSVYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVIDLTAGFPTTSAARNQITTDARLWAAQRLVTPASKPAFVWQTATDESVPPINSLKYVQAmLQHQVATAYHLFGSGIHGLALA------------LNDQAAIWPQLALRWLQEQGLLA 273
                             |       9        19        29       |39        49        59||   |  69        79        89        99       109       119       129       139       149       159       169       179       189       199       209      |219       229        |-         - |     259       269    
                             1-MSE                              37-MSE                 60-MSE|                                                                                                                                                    216-MSE               238          251                      
                                                                                        61-MSE                                                                                                                                                                                                                
                                                                                            65-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3BXP)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BXP)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (F9US10_LACPL | F9US10)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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        F9US10_LACPL | F9US10: 3d3n 4bzw 4bzz 4c01

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