Chain A from PDB Type:PROTEIN Length:96
aligned with CAF1A_YERPE | P26949 from UniProtKB/Swiss-Prot Length:833
Alignment length:96
59 69 79 89 99 109 119 129 139
CAF1A_YERPE 50 LPGNYFVNVFVNGRKVDSGNIDFRLEKHNGKELLWPCLSSLQLTKYGIDIDKYPDLIKSGTEQCVDLLAIPHSDVQFYFNQQKLSLIVPPQALLPR 145
SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
CATH domains ------------------------------------------------------------------------------------------------ CATH domains
Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ..eeeeeeeee..eeeeeeeeeeeeeee..eeeeee..hhhhhhhh..hhhhhhhhhhh......hhhhh...eeeeehhh.eeeee.hhhh.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------ Transcript
4b0e A 28 LPGNYFVNVFVNGRKVDSGNIDFRLEKHNGKELLWPCLSSLQLTKYGIDIDKYPDLIKSGTEQCVDLLAIPHSDVQFYFNQQKLSLIVPPQALLPR 123
37 47 57 67 77 87 97 107 117
Chain B from PDB Type:PROTEIN Length:98
aligned with CAF1A_YERPE | P26949 from UniProtKB/Swiss-Prot Length:833
Alignment length:98
58 68 78 88 98 108 118 128 138
CAF1A_YERPE 49 QLPGNYFVNVFVNGRKVDSGNIDFRLEKHNGKELLWPCLSSLQLTKYGIDIDKYPDLIKSGTEQCVDLLAIPHSDVQFYFNQQKLSLIVPPQALLPRF 146
SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
CATH domains -------------------------------------------------------------------------------------------------- CATH domains
Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...eeeeeeeee..eeeeeeeeeeeeeee..eeeeeee.hhhhhhhh..hhhhhhhhhhh......hhhhh...eeeee....eeeee.hhhh..... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------- Transcript
4b0e B 27 QLPGNYFVNVFVNGRKVDSGNIDFRLEKHNGKELLWPCLSSLQLTKYGIDIDKYPDLIKSGTEQCVDLLAIPHSDVQFYFNQQKLSLIVPPQALLPRF 124
36 46 56 66 76 86 96 106 116
Chain C from PDB Type:PROTEIN Length:91
aligned with CAF1A_YERPE | P26949 from UniProtKB/Swiss-Prot Length:833
Alignment length:95
59 69 79 89 99 109 119 129 139
CAF1A_YERPE 50 LPGNYFVNVFVNGRKVDSGNIDFRLEKHNGKELLWPCLSSLQLTKYGIDIDKYPDLIKSGTEQCVDLLAIPHSDVQFYFNQQKLSLIVPPQALLP 144
SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
CATH domains ----------------------------------------------------------------------------------------------- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeeeeeeee..eeeeeeeeeeeeeee..eeeeeee.hhhhhhhh..hhhhhhhhh----....hhhhh...eeeee....eeeee.hhhh... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------- Transcript
4b0e C 28 LPGNYFVNVFVNGRKVDSGNIDFRLEKHNGKELLWPCLSSLQLTKYGIDIDKYPDLI----EQCVDLLAIPHSDVQFYFNQQKLSLIVPPQALLP 122
37 47 57 67 77 | - | 97 107 117
84 89
Chain D from PDB Type:PROTEIN Length:100
aligned with CAF1A_YERPE | P26949 from UniProtKB/Swiss-Prot Length:833
Alignment length:105
49 59 69 79 89 99 109 119 129 139
CAF1A_YERPE 40 DVSLFNQGLQLPGNYFVNVFVNGRKVDSGNIDFRLEKHNGKELLWPCLSSLQLTKYGIDIDKYPDLIKSGTEQCVDLLAIPHSDVQFYFNQQKLSLIVPPQALLP 144
SCOP domains d4b0ed_ D: automated matches SCOP domains
CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .hhhhhh.....eeeeeeeee..eeeeeeeeeeeeeee..eeeeee..hhhhhhhh..hhhhhhhhh-----...hhhhh...eeeeehhh.eeeee.hhhh... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------- Transcript
4b0e D 18 DVSLFNQGLQLPGNYFVNVFVNGRKVDSGNIDFRLEKHNGKELLWPCLSSLQLTKYGIDIDKYPDLI-----QCVDLLAIPHSDVQFYFNQQKLSLIVPPQALLP 122
27 37 47 57 67 77 | - | 97 107 117
84 90
Legend: |
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→ Mismatch |
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→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |