4AVT - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   STRUCTURE OF CPHPC BOUND TO SERUM AMYLOID P COMPONENT

Authors :   S. E. Kolstoe, A. Purvis, S. P. Wood

Date :   29 May 12 (Deposition) - 19 Jun 13 (Release) - 22 Oct 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.20

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,C,E,G,I  (1x)
Biol. Unit 2: B,D,F,H,J  (1x)

Keywords :   Sugar Binding Protein, Lectin, Metal-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. E. Kolstoe, M. C. Jenvey, A. Purvis, M. E. Light, D. Thompson, P. Hughes, M. B. Pepys, S. P. Wood
Interaction Of Serum Amyloid P Component With Hexanoyl Bis(D-Proline) (Cphpc)
Acta Crystallogr. , Sect. D V. 70 2232 2014
PubMed-ID: 25084341 | Reference-DOI: 10.1107/S1399004714013455

Molecule 1 - SERUM AMYLOID P-COMPONENT
	Chains	:	A, B, C, D, E, F, G, H, I, J
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	SAP, 9.5S ALPHA-1-GLYCOPROTEIN
	Tissue	:	SERUM

		1	2	3	4	5	6	7	8	9	10
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J
Biological Unit 1 (1x)	:	A		C		E		G		I
Biological Unit 2 (1x)	:		B		D		F		H		J

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 35)

No.	Name	Count	Type	Full Name
1	CA	20	Ligand/Ion	CALCIUM ION
2	GHE	5	Ligand/Ion	(2R)-1-[6-[(2R)-2-CARBOXYPYRROLIDIN-1-YL]-6-OXIDANYLIDENE-HEXANOYL]PYRROLIDINE-2-CARBOXYLIC ACID
3	NAG	10	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 1 (2, 8)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	GHE	3	Ligand/Ion	(2R)-1-[6-[(2R)-2-CARBOXYPYRROLIDIN-1-YL]-6-OXIDANYLIDENE-HEXANOYL]PYRROLIDINE-2-CARBOXYLIC ACID
3	NAG	5	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 2 (2, 7)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	GHE	2	Ligand/Ion	(2R)-1-[6-[(2R)-2-CARBOXYPYRROLIDIN-1-YL]-6-OXIDANYLIDENE-HEXANOYL]PYRROLIDINE-2-CARBOXYLIC ACID
3	NAG	5	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (35, 35)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:58 , ASN A:59 , GLU A:136 , GLN A:137 , ASP A:138 , GHE B:1207	BINDING SITE FOR RESIDUE CA A1205
02	AC2	SOFTWARE	GLU A:136 , ASP A:138 , GLN A:148 , GHE B:1207	BINDING SITE FOR RESIDUE CA A1206
03	AC3	SOFTWARE	ASP B:58 , ASN B:59 , GLU B:136 , GLN B:137 , ASP B:138 , GHE B:1207	BINDING SITE FOR RESIDUE CA B1205
04	AC4	SOFTWARE	GLU B:136 , ASP B:138 , ASP B:145 , GLN B:148 , GHE B:1207	BINDING SITE FOR RESIDUE CA B1206
05	AC5	SOFTWARE	ASN A:59 , TYR A:64 , TYR A:74 , GLU A:136 , ASP A:138 , GLN A:148 , CA A:1205 , CA A:1206 , ASP B:58 , ASN B:59 , TYR B:64 , GLU B:136 , ASP B:138 , GLN B:148 , CA B:1205 , CA B:1206	BINDING SITE FOR RESIDUE GHE B1207
06	AC6	SOFTWARE	ASP C:58 , ASN C:59 , GLU C:136 , GLN C:137 , ASP C:138 , GHE C:1207	BINDING SITE FOR RESIDUE CA C1205
07	AC7	SOFTWARE	GLU C:136 , ASP C:138 , GLN C:148 , GHE C:1207	BINDING SITE FOR RESIDUE CA C1206
08	AC8	SOFTWARE	ASP C:58 , ASN C:59 , TYR C:64 , TYR C:74 , GLU C:136 , ASP C:138 , GLN C:148 , CA C:1205 , CA C:1206 , ASP D:58 , ASN D:59 , GLU D:136 , ASP D:138 , GLN D:148 , CA D:1205 , CA D:1206	BINDING SITE FOR RESIDUE GHE C1207
09	AC9	SOFTWARE	GHE C:1207 , ASP D:58 , ASN D:59 , GLU D:136 , GLN D:137 , ASP D:138	BINDING SITE FOR RESIDUE CA D1205
10	BC1	SOFTWARE	GHE C:1207 , GLU D:136 , ASP D:138 , GLN D:148	BINDING SITE FOR RESIDUE CA D1206
11	BC2	SOFTWARE	ASP E:58 , ASN E:59 , GLU E:136 , GLN E:137 , ASP E:138 , GHE E:1207	BINDING SITE FOR RESIDUE CA E1205
12	BC3	SOFTWARE	GLU E:136 , ASP E:138 , GLN E:148 , GHE E:1207	BINDING SITE FOR RESIDUE CA E1206
13	BC4	SOFTWARE	ASP E:58 , ASN E:59 , TYR E:64 , TYR E:74 , GLU E:136 , ASP E:138 , GLN E:148 , CA E:1205 , CA E:1206 , ASP F:58 , ASN F:59 , TYR F:74 , GLU F:136 , ASP F:138 , GLN F:148 , CA F:1205 , CA F:1206	BINDING SITE FOR RESIDUE GHE E1207
14	BC5	SOFTWARE	GHE E:1207 , ASP F:58 , ASN F:59 , GLU F:136 , GLN F:137 , ASP F:138	BINDING SITE FOR RESIDUE CA F1205
15	BC6	SOFTWARE	GHE E:1207 , GLU F:136 , ASP F:138 , GLN F:148	BINDING SITE FOR RESIDUE CA F1206
16	BC7	SOFTWARE	ASP G:58 , ASN G:59 , GLU G:136 , GLN G:137 , ASP G:138 , GHE G:1207	BINDING SITE FOR RESIDUE CA G1205
17	BC8	SOFTWARE	GLU G:136 , ASP G:138 , GLN G:148 , GHE G:1207	BINDING SITE FOR RESIDUE CA G1206
18	BC9	SOFTWARE	ASP G:58 , ASN G:59 , LEU G:62 , TYR G:64 , TYR G:74 , GLU G:136 , ASP G:138 , GLN G:148 , CA G:1205 , CA G:1206 , ASP H:58 , ASN H:59 , LEU H:62 , TYR H:74 , GLU H:136 , ASP H:138 , GLN H:148 , CA H:1205 , CA H:1206	BINDING SITE FOR RESIDUE GHE G1207
19	CC1	SOFTWARE	GHE G:1207 , ASP H:58 , ASN H:59 , GLU H:136 , GLN H:137 , ASP H:138	BINDING SITE FOR RESIDUE CA H1205
20	CC2	SOFTWARE	GHE G:1207 , GLU H:136 , ASP H:138 , GLN H:148	BINDING SITE FOR RESIDUE CA H1206
21	CC3	SOFTWARE	ASP I:58 , ASN I:59 , GLU I:136 , GLN I:137 , ASP I:138 , GHE J:1207	BINDING SITE FOR RESIDUE CA I1205
22	CC4	SOFTWARE	GLU I:136 , ASP I:138 , GLN I:148 , GHE J:1207	BINDING SITE FOR RESIDUE CA I1206
23	CC5	SOFTWARE	ASP J:58 , ASN J:59 , GLU J:136 , GLN J:137 , ASP J:138 , GHE J:1207	BINDING SITE FOR RESIDUE CA J1205
24	CC6	SOFTWARE	GLU J:136 , ASP J:138 , GLN J:148 , GHE J:1207	BINDING SITE FOR RESIDUE CA J1206
25	CC7	SOFTWARE	ASP I:58 , ASN I:59 , TYR I:74 , GLU I:136 , ASP I:138 , GLN I:148 , CA I:1205 , CA I:1206 , ASP J:58 , ASN J:59 , LEU J:62 , TYR J:74 , GLU J:136 , ASP J:138 , GLN J:148 , CA J:1205 , CA J:1206	BINDING SITE FOR RESIDUE GHE J1207
26	CC8	SOFTWARE	ASN A:32 , GLU A:99	BINDING SITE FOR MONO-SACCHARIDE NAG A1207 BOUND TO ASN A 32
27	CC9	SOFTWARE	GLN B:31 , ASN B:32 , GLU B:99	BINDING SITE FOR MONO-SACCHARIDE NAG B1208 BOUND TO ASN B 32
28	DC1	SOFTWARE	GLN C:31 , ASN C:32 , GLU C:99	BINDING SITE FOR MONO-SACCHARIDE NAG C1208 BOUND TO ASN C 32
29	DC2	SOFTWARE	GLN D:31 , ASN D:32 , GLU D:99 , SER D:101	BINDING SITE FOR MONO-SACCHARIDE NAG D1207 BOUND TO ASN D 32
30	DC3	SOFTWARE	GLN E:31 , ASN E:32 , GLU E:99 , SER E:101	BINDING SITE FOR MONO-SACCHARIDE NAG E1208 BOUND TO ASN E 32
31	DC4	SOFTWARE	ASN F:32 , GLU F:99 , ASP F:161	BINDING SITE FOR MONO-SACCHARIDE NAG F1207 BOUND TO ASN F 32
32	DC5	SOFTWARE	GLN G:31 , ASN G:32 , GLU G:99	BINDING SITE FOR MONO-SACCHARIDE NAG G1208 BOUND TO ASN G 32
33	DC6	SOFTWARE	GLN H:31 , ASN H:32 , GLU H:99	BINDING SITE FOR MONO-SACCHARIDE NAG H1207 BOUND TO ASN H 32
34	DC7	SOFTWARE	GLN I:31 , ASN I:32 , GLU I:99	BINDING SITE FOR MONO-SACCHARIDE NAG I1207 BOUND TO ASN I 32
35	DC8	SOFTWARE	GLN J:31 , ASN J:32 , GLU J:99	BINDING SITE FOR MONO-SACCHARIDE NAG J1208 BOUND TO ASN J 32

(no "SS Bond" information available for 4AVT)

Asymmetric Unit

No.	Residues
1	Phe A:88	-	Pro A:89
2	Phe B:88	-	Pro B:89
3	Phe C:88	-	Pro C:89
4	Phe D:88	-	Pro D:89
5	Phe E:88	-	Pro E:89
6	Phe F:88	-	Pro F:89
7	Phe G:88	-	Pro G:89
8	Phe H:88	-	Pro H:89
9	Phe I:88	-	Pro I:89
10	Phe J:88	-	Pro J:89

Asymmetric Unit (3, 30)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_035814	G	141	S	SAMP_HUMAN	Unclassified	---	A/B/C/D/E/F/G/H/I/J	G	122	S
2	UniProt	VAR_006054	E	155	G	SAMP_HUMAN	Polymorphism	---	A/B/C/D/E/F/G/H/I/J	E	136	G
3	UniProt	VAR_006055	S	158	G	SAMP_HUMAN	Polymorphism	---	A/B/C/D/E/F/G/H/I/J	S	139	G

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (3, 15)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_035814	G	141	S	SAMP_HUMAN	Unclassified	---	A/C/E/G/I	G	122	S
2	UniProt	VAR_006054	E	155	G	SAMP_HUMAN	Polymorphism	---	A/C/E/G/I	E	136	G
3	UniProt	VAR_006055	S	158	G	SAMP_HUMAN	Polymorphism	---	A/C/E/G/I	S	139	G

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (3, 15)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_035814	G	141	S	SAMP_HUMAN	Unclassified	---	B/D/F/H/J	G	122	S
2	UniProt	VAR_006054	E	155	G	SAMP_HUMAN	Polymorphism	---	B/D/F/H/J	E	136	G
3	UniProt	VAR_006055	S	158	G	SAMP_HUMAN	Polymorphism	---	B/D/F/H/J	S	139	G

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (2, 20)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PTX_2	PS51828	Pentraxin (PTX) domain profile.	SAMP_HUMAN	24-223	10	A:5-204 B:5-204 C:5-204 D:5-204 E:5-204 F:5-204 G:5-204 H:5-204 I:5-204 J:5-204
2	PTX_1	PS00289	Pentraxin domain signature.	SAMP_HUMAN	112-119	10	A:93-100 B:93-100 C:93-100 D:93-100 E:93-100 F:93-100 G:93-100 H:93-100 I:93-100 J:93-100

Biological Unit 1 (2, 10)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PTX_2	PS51828	Pentraxin (PTX) domain profile.	SAMP_HUMAN	24-223	5	A:5-204 - C:5-204 - E:5-204 - G:5-204 - I:5-204 -
2	PTX_1	PS00289	Pentraxin domain signature.	SAMP_HUMAN	112-119	5	A:93-100 - C:93-100 - E:93-100 - G:93-100 - I:93-100 -

Biological Unit 2 (2, 10)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PTX_2	PS51828	Pentraxin (PTX) domain profile.	SAMP_HUMAN	24-223	5	- B:5-204 - D:5-204 - F:5-204 - H:5-204 - J:5-204
2	PTX_1	PS00289	Pentraxin domain signature.	SAMP_HUMAN	112-119	5	- B:93-100 - D:93-100 - F:93-100 - H:93-100 - J:93-100

Asymmetric Unit (2, 20)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000255040	1	ENSE00000904938	chr1:159557615-159557775	161	SAMP_HUMAN	1-22	22	10	A:1-3 B:1-3 C:1-3 D:1-3 E:1-3 F:1-3 G:1-3 H:1-3 I:1-3 J:1-3	3 3 3 3 3 3 3 3 3 3
1.2	ENST00000255040	2	ENSE00000904939	chr1:159557891-159558655	765	SAMP_HUMAN	22-223	202	10	A:3-204 B:3-204 C:3-204 D:3-204 E:3-204 F:3-204 G:3-204 H:3-204 I:3-204 J:3-204	202 202 202 202 202 202 202 202 202 202

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeee.........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhh........ee.....eeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: A:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: A:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 4avt A   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain B from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeee.........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhh........ee.....eeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: B:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: B:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 4avt B   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain C from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeee.........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhh........ee.....eeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: C:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: C:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 4avt C   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain D from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeee.........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhh........ee.....eeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: D:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: D:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 4avt D   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain E from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeee.........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhh........ee.....eeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: E:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: E:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 4avt E   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain F from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeee.........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee.......eeeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhh........ee.....eeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: F:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: F:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 4avt F   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain G from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeee.........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhh........ee.....eeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: G:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: G:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 4avt G   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain H from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeee.........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhh........ee.....eeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: H:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: H:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 4avt H   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain I from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeee.........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhh........ee.....eeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: I:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: I:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 4avt I   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain J from PDB  Type:PROTEIN  Length:204
 aligned with SAMP_HUMAN | P02743 from UniProtKB/Swiss-Prot  Length:223

    Alignment length:204
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219    
           SAMP_HUMAN    20 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 223
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeee.......eeee.........eeeeeeeee......eeeeeeee..eeeeeeeeeee..eeeeee..eeeeee........eeeeeeee....eeeeee..ee...ee...........eeee...........hhhhh..eeeeeeeee....hhhhhhhhhh........ee.....eeee...eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------S-------------G--G----------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----PTX_2  PDB: J:5-204 UniProt: 24-223                                                                                                                                                                      PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------PTX_1   -------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) --Exon 1.2  PDB: J:3-204 UniProt: 22-223                                                                                                                                                                     Transcript 1 (2)
                 4avt J   1 HTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV 204
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4AVT)

(no "CATH Domain" information available for 4AVT)

(no "Pfam Domain" information available for 4AVT)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H,I,J (SAMP_HUMAN | P02743)

molecular function
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0030246	carbohydrate binding	Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
	GO:0001849	complement component C1q binding	Interacting selectively and non-covalently with the C1q component of the classical complement cascade.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0051082	unfolded protein binding	Interacting selectively and non-covalently with an unfolded protein.
	GO:0046790	virion binding	Interacting selectively and non-covalently with a virion, either by binding to components of the capsid or the viral envelope.
biological process
	GO:0006953	acute-phase response	An acute inflammatory response that involves non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals.
	GO:0044267	cellular protein metabolic process	The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification.
	GO:0051131	chaperone-mediated protein complex assembly	The aggregation, arrangement and bonding together of a set of components to form a protein complex, mediated by chaperone molecules that do not form part of the finished complex.
	GO:0045087	innate immune response	Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
	GO:0044869	negative regulation by host of viral exo-alpha-sialidase activity	The process in which a host organism decreases viral exo-alpha-sialidase activity, the catalysis of the hydrolysis of peptide bonds in a protein.
	GO:0044871	negative regulation by host of viral glycoprotein metabolic process	A process in which a host organism stops, prevents or reduces the frequency, rate or extent of viral glycoprotein metabolic process.
	GO:0002674	negative regulation of acute inflammatory response	Any process that stops, prevents, or reduces the frequency, rate, or extent of an acute inflammatory response.
	GO:1903016	negative regulation of exo-alpha-sialidase activity	Any process that stops, prevents or reduces the frequency, rate or extent of exo-alpha-sialidase activity.
	GO:1903019	negative regulation of glycoprotein metabolic process	Any process that stops, prevents or reduces the frequency, rate or extent of glycoprotein metabolic process.
	GO:0045656	negative regulation of monocyte differentiation	Any process that stops, prevents, or reduces the frequency, rate or extent of monocyte differentiation.
	GO:0046597	negative regulation of viral entry into host cell	Any process that stops, prevents, or reduces the frequency, rate or extent of the entry of viral entry into a host cell.
	GO:0048525	negative regulation of viral process	Any process that stops, prevents, or reduces the frequency, rate or extent of a multi-organism process in which a virus is a participant.
	GO:0061045	negative regulation of wound healing	Any process that decreases the rate, frequency, or extent of the series of events that restore integrity to a damaged tissue, following an injury.
	GO:0006457	protein folding	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
cellular component
	GO:0072562	blood microparticle	A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0031012	extracellular matrix	A structure lying external to one or more cells, which provides structural support for cells or tissues.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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	Cis Peptide Bonds
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	4avt
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	SAMP_HUMAN \| P02743
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	SAMP_HUMAN \| P02743
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UniProtKB/Swiss-Prot
	SAMP_HUMAN \| P02743	:	1gyk 1lgn 1sac 2a3w 2a3x 2a3y 2w08 3d5o 3kqr 4avs 4avv 4ayu

1gyk	SERUM AMYLOID P COMPONENT CO-CRYSTALLISED WITH MOBDG AT NEUTRAL PH
1lgn	DECAMERIC DAMP COMPLEX OF HUMAN SERUM AMYLOID P COMPONENT
1sac	SERUM AMYLOID P COMPONENT (SAP)
2a3w	DECAMERIC STRUCTURE OF HUMAN SERUM AMYLOID P- COMPONENTBOUND TO BIS-1,2-{[(Z)-2-CARBOXY-2-METHYL- 1,3-DIOXANE]-5-YLOXYCARBAMOYL}-ETHANE
2a3x	DECAMERIC CRYSTAL STRUCTURE OF HUMAN SERUM AMYLOID P- COMPONENT BOUND TO BIS-1,2-{[(Z)-2CARBOXY- 2-METHYL -1,3-DIOXANE]- 5-YLOXYCARBONYL}-PIPERAZINE
2a3y	PENTAMERIC CRYSTAL STRUCTURE OF HUMAN SERUM AMYLOID P- COMPONENT BOUND TO BIS-1,2-{[(Z)-2CARBOXY-2-METHYL- 1,3-DIOXANE]-5-YLOXYCARBAMOYL}-ETHANE.
2w08	THE STRUCTURE OF SERUM AMYLOID P COMPONENT BOUND TO 0-PHOSPHO-THREONINE
4avs	STRUCTURE OF N-ACETYL-L-PROLINE BOUND TO SERUM AMYLOID P COMPONENT
4avv	STRUCTURE OF CPHPC BOUND TO SERUM AMYLOID P COMPONENT

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 35)

Sites (35, 35)

SS Bonds (0, 0)

Cis Peptide Bonds (10, 10)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (3, 30)

PROSITE Motifs (2, 20)

Exons (2, 20)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (26, 26)

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